C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001JK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000004130-ENSDARG00000090797 CGP 7955 5:21277526-21536223
GeneTranscriptPositionBiotype
ENSDARG00000004130 (mvk)
mevalonate kinase 		ENSDART00000006673 (mvk-001) 21277526-21293023 protein_coding
CIL_0001JK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000110921-ENSG00000139438 CGP 9606 12:109573255-109770507
GeneTranscriptPositionBiotype
ENSG00000110921 (MVK)
mevalonate kinase 		ENST00000228510 (MVK-001) 109573812-109597266 protein_coding
ENST00000392727 (MVK-003) 109573837-109597261 protein_coding
ENST00000447878 (MVK-004) 109573793-109597236 nonsense_mediated_decay
ENST00000535044 (MVK-010) 109573341-109586098 processed_transcript
ENST00000537237 (MVK-002) 109573814-109596581 nonsense_mediated_decay
ENST00000539335 (MVK-006) 109573255-109581535 protein_coding
ENST00000539575 (MVK-201) 109574807-109598117 protein_coding
ENST00000539696 (MVK-009) 109573805-109596677 protein_coding
ENST00000540353 (MVK-005) 109587861-109597262 retained_intron
ENST00000545516 (MVK-011) 109581479-109587099 retained_intron
ENST00000545774 (MVK-012) 109573832-109587069 nonsense_mediated_decay
ENST00000546277 (MVK-007) 109573302-109586096 protein_coding
ENSG00000139438 (FAM222A)
family with sequence similarity 222, member A 		ENST00000358906 (FAM222A-002) 109734767-109770494 protein_coding
ENST00000538780 (FAM222A-001) 109714228-109770507 protein_coding
ENST00000543653 (FAM222A-003) 109714735-109722825 processed_transcript
ENSG00000200794 (RN7SKP250)
RNA, 7SK small nuclear pseudogene 250 		ENST00000363924 (RN7SKP250-201) 109662863-109663183 misc_RNA
ENSG00000255650 (FAM222A-AS1)
FAM222A antisense RNA 1 		ENST00000536474 (FAM222A-AS1-004) 109734412-109735957 antisense
ENST00000541460 (FAM222A-AS1-002) 109734323-109773484 antisense
ENST00000541723 (FAM222A-AS1-001) 109734166-109773508 antisense
CIL_0001JK_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041939-ENSMUSG00000041930 CGP 10090 5:114444269-114613220
GeneTranscriptPositionBiotype
ENSMUSG00000041930 (Fam222a)
family with sequence similarity 222, member A 		ENSMUST00000043650 (Fam222a-001) 114568016-114613220 protein_coding
ENSMUST00000130983 (Fam222a-002) 114568017-114594678 processed_transcript
ENSMUSG00000041939 (Mvk)
mevalonate kinase 		ENSMUST00000043760 (Mvk-001) 114444280-114460591 protein_coding
ENSMUST00000112239 (Mvk-005) 114444286-114460477 protein_coding
ENSMUST00000124260 (Mvk-004) 114444303-114453096 retained_intron
ENSMUST00000125120 (Mvk-002) 114444294-114460584 retained_intron
ENSMUST00000125650 (Mvk-007) 114444303-114455483 protein_coding
ENSMUST00000137167 (Mvk-003) 114444269-114453149 retained_intron
ENSMUST00000139420 (Mvk-006) 114452420-114460572 processed_transcript
ENSMUSG00000086302 (Gm13790)
predicted gene 13790 		ENSMUST00000156209 (Gm13790-001) 114551289-114554016 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001JK_0001ENSDARG00000004130ENSDART00000006673CIL_0001JK_0002ENSG00000110921ENST00000228510ENST00000392727ENST00000447878ENST00000535044ENST00000537237ENST00000539335ENST00000539575ENST00000539696ENST00000540353ENST00000545516ENST00000545774ENST00000546277ENSG00000139438ENST00000358906ENST00000538780ENST00000543653ENSG00000200794ENST00000363924ENSG00000255650ENST00000536474ENST00000541460ENST00000541723CIL_0001JK_0003ENSMUSG00000041930ENSMUST00000043650ENSMUST00000130983ENSMUSG00000041939ENSMUST00000043760ENSMUST00000112239ENSMUST00000124260ENSMUST00000125120ENSMUST00000125650ENSMUST00000137167ENSMUST00000139420ENSMUSG00000086302ENSMUST00000156209
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001JK_0001ENSDARG00000004130ENSDART00000006673CIL_0001JK_0002ENSG00000110921ENST00000228510ENST00000392727ENST00000447878ENST00000539335ENST00000540353ENST00000546277ENSG00000139438ENST00000358906ENST00000538780ENST00000543653ENSG00000200794ENST00000363924ENSG00000255650ENST00000536474ENST00000541460ENST00000541723CIL_0001JK_0003ENSMUSG00000041930ENSMUST00000043650ENSMUST00000130983ENSMUSG00000041939ENSMUST00000043760ENSMUST00000112239ENSMUST00000125120ENSMUST00000125650ENSMUST00000137167ENSMUSG00000086302ENSMUST00000156209
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000004130 ENSDART00000006673 N/A N/A N/A 0.930±0.60 N/A N/A 0.729±0.45 2.197±2.40 0.171±0.00 N/A 0.168±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000110921 ENST00000228510 N/A 4.891±0.00 N/A 0.890±0.00 N/A 1.222±0.00 N/A 11.505±8.10 24.251±0.00 2.768±0.00 1.981±0.00 13.747±3.33 5.862±1.20 31.274±20.86
ENST00000392727 N/A N/A N/A N/A 0.572±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447878 3.740±0.00 N/A N/A 11.259±0.00 N/A 2.398±0.00 N/A N/A 0.548±0.00 N/A 2.783±0.00 N/A 4.135±0.00 9.152±0.00
ENST00000535044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539335 N/A N/A N/A N/A N/A N/A N/A N/A 1.675±0.00 N/A N/A N/A N/A N/A
ENST00000539575 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540353 N/A N/A 0.203±0.00 N/A 0.328±0.00 N/A N/A N/A N/A 0.499±0.00 N/A N/A N/A N/A
ENST00000545516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546277 N/A N/A N/A N/A N/A N/A 1.231±0.00 7.871±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000139438 ENST00000358906 N/A 0.367±0.00 0.213±0.00 1.795±0.00 0.437±0.33 0.328±0.03 0.228±0.00 N/A 0.183±0.00 0.013±0.00 0.527±0.05 1.720±1.13 N/A 2.554±0.00
ENST00000538780 0.388±0.00 0.148±0.00 N/A 5.077±4.54 0.255±0.10 0.793±0.00 2.595±2.49 4.990±4.63 1.020±0.00 2.017±0.00 1.842±0.00 2.796±3.09 0.371±0.11 5.633±1.83
ENST00000543653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.208±0.00 N/A
ENSG00000200794 ENST00000363924 0.053±0.00 0.054±0.00 N/A 0.058±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.050±0.00
ENSG00000255650 ENST00000536474 0.095±0.00 N/A N/A N/A 0.366±0.00 N/A 0.184±0.00 N/A N/A N/A N/A 0.413±0.20 0.093±0.00 2.141±1.87
ENST00000541460 N/A N/A N/A 0.393±0.00 N/A 0.049±0.00 N/A N/A 0.192±0.00 N/A N/A 0.321±0.00 N/A 0.263±0.00
ENST00000541723 0.064±0.00 0.179±0.00 N/A 0.352±0.00 0.941±0.00 N/A 0.107±0.00 0.563±0.09 N/A 0.336±0.00 N/A 0.417±0.11 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000041930 ENSMUST00000043650 0.776±0.29 18.073±0.98 0.105±0.02 2.555±0.69 0.881±0.38 3.116±0.29 0.760±0.18 1.696±0.18 0.525±0.12 2.400±0.08 0.127±0.06 13.422±4.93 0.450±0.22 4.297±2.22
ENSMUST00000130983 N/A N/A N/A 1.306±0.00 0.142±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.956±0.00
ENSMUSG00000041939 ENSMUST00000043760 12.365±5.87 12.355±3.69 11.170±3.17 10.803±1.39 9.298±4.60 9.765±4.93 1.881±1.04 4.064±0.78 5.592±2.15 13.147±3.81 1.782±0.56 8.937±4.07 7.888±3.32 2.519±0.49
ENSMUST00000112239 6.890±1.82 12.178±2.14 2.849±0.00 6.857±0.49 4.605±1.52 7.581±1.27 0.704±0.19 3.296±0.63 5.508±2.29 6.019±0.63 0.793±0.32 8.421±2.21 4.053±1.54 1.628±0.22
ENSMUST00000124260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.728±0.00 0.654±0.00 N/A
ENSMUST00000125650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.887±0.30 4.650±0.00 N/A
ENSMUST00000137167 N/A N/A N/A 7.153±0.00 1.717±0.00 N/A N/A N/A N/A N/A N/A 7.295±0.00 N/A N/A
ENSMUST00000139420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000086302 ENSMUST00000156209 N/A 0.165±0.00 N/A 0.023±0.00 N/A N/A N/A N/A 0.060±0.00 N/A N/A N/A N/A 0.094±0.00

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