C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001KC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000088305-ENSG00000101367 CGP 9606 20:32762385-32850405
GeneTranscriptPositionBiotype
ENSG00000088305 (DNMT3B)
DNA (cytosine-5-)-methyltransferase 3 beta 		ENST00000201963 (DNMT3B-004) 32779852-32809356 protein_coding
ENST00000328111 (DNMT3B-001) 32762385-32809356 protein_coding
ENST00000348286 (DNMT3B-003) 32762424-32809356 protein_coding
ENST00000353855 (DNMT3B-002) 32762424-32809356 protein_coding
ENST00000443239 (DNMT3B-006) 32762596-32808280 protein_coding
ENST00000456297 (DNMT3B-005) 32762642-32808069 protein_coding
ENSG00000101367 (MAPRE1)
microtubule-associated protein, RP/EB family, member 1 		ENST00000375571 (MAPRE1-001) 32819893-32850405 protein_coding
ENSG00000260536 (RP5-1085F17.4)
 ENST00000565572 (RP5-1085F17.4-001) 32843128-32854257 antisense
CIL_0001KC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027478-ENSMUSG00000027479 CGP 10090 2:153649450-153773310
GeneTranscriptPositionBiotype
ENSMUSG00000027478 (Dnmt3b)
DNA methyltransferase 3B 		ENSMUST00000056495 (Dnmt3b-201) 153649454-153687726 protein_coding
ENSMUST00000072997 (Dnmt3b-002) 153649450-153687730 protein_coding
ENSMUST00000081628 (Dnmt3b-004) 153649453-153687730 protein_coding
ENSMUST00000088976 (Dnmt3b-005) 153649454-153687730 protein_coding
ENSMUST00000103150 (Dnmt3b-008) 153649454-153687730 protein_coding
ENSMUST00000103151 (Dnmt3b-006) 153649453-153687730 protein_coding
ENSMUST00000109771 (Dnmt3b-009) 153649617-153687316 protein_coding
ENSMUST00000109772 (Dnmt3b-007) 153649454-153687730 protein_coding
ENSMUST00000109773 (Dnmt3b-003) 153649450-153687730 protein_coding
ENSMUST00000109774 (Dnmt3b-001) 153649453-153687730 protein_coding
ENSMUST00000132132 (Dnmt3b-010) 153665802-153667959 retained_intron
ENSMUST00000140811 (Dnmt3b-011) 153669370-153670416 retained_intron
ENSMUSG00000027479 (Mapre1)
microtubule-associated protein, RP/EB family, member 1 		ENSMUST00000028981 (Mapre1-001) 153741274-153773310 protein_coding
ENSMUST00000123570 (Mapre1-003) 153745393-153756080 processed_transcript
ENSMUST00000123795 (Mapre1-002) 153741602-153758084 processed_transcript
ENSMUSG00000079000 (Dnmt3bos)
DNA methyltransferase 3B, opposite strand 		ENSMUST00000124988 (Dnmt3bos-001) 153648690-153650286 antisense
ENSMUSG00000082079 (Gm14490)
predicted gene 14490 		ENSMUST00000119996 (Gm14490-001) 153696652-153729905 unprocessed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001KC_0001ENSG00000088305ENST00000201963ENST00000328111ENST00000348286ENST00000353855ENST00000443239ENST00000456297ENSG00000101367ENST00000375571ENSG00000260536ENST00000565572CIL_0001KC_0002ENSMUSG00000027478ENSMUST00000056495ENSMUST00000072997ENSMUST00000081628ENSMUST00000088976ENSMUST00000103150ENSMUST00000103151ENSMUST00000109771ENSMUST00000109772ENSMUST00000109773ENSMUST00000109774ENSMUST00000132132ENSMUST00000140811ENSMUSG00000027479ENSMUST00000028981ENSMUST00000123570ENSMUST00000123795ENSMUSG00000079000ENSMUST00000124988ENSMUSG00000082079ENSMUST00000119996
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001KC_0001ENSG00000088305ENST00000201963ENST00000328111ENST00000348286ENST00000353855ENST00000443239ENST00000456297ENSG00000101367ENST00000375571ENSG00000260536ENST00000565572CIL_0001KC_0002ENSMUSG00000027478ENSMUST00000056495ENSMUST00000072997ENSMUST00000081628ENSMUST00000088976ENSMUST00000103150ENSMUST00000103151ENSMUST00000109771ENSMUST00000109772ENSMUST00000109773ENSMUSG00000027479ENSMUST00000028981ENSMUST00000123795ENSMUSG00000079000ENSMUST00000124988ENSMUSG00000082079ENSMUST00000119996
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088305 ENST00000201963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.331±0.00
ENST00000328111 N/A N/A N/A N/A N/A N/A 0.047±0.00 N/A N/A N/A N/A 1.457±0.00 0.608±0.00 N/A
ENST00000348286 0.116±0.00 0.045±0.00 N/A 0.054±0.00 0.330±0.00 0.147±0.00 N/A N/A 0.151±0.04 N/A N/A 0.548±0.10 0.860±0.00 0.418±0.00
ENST00000353855 N/A 0.221±0.00 0.064±0.00 N/A 0.066±0.00 N/A N/A 0.029±0.00 N/A N/A N/A 4.181±3.87 0.607±0.27 1.771±0.75
ENST00000443239 N/A N/A N/A 0.168±0.00 N/A N/A N/A N/A N/A N/A N/A 0.279±0.00 N/A N/A
ENST00000456297 N/A N/A N/A N/A N/A N/A 0.203±0.00 0.137±0.00 N/A 0.034±0.00 N/A N/A N/A N/A
ENSG00000101367 ENST00000375571 40.249±0.00 34.673±0.00 7.703±0.00 15.448±10.28 24.362±5.18 27.304±13.68 12.474±7.05 18.378±15.39 13.153±7.89 34.370±16.89 6.578±2.93 45.996±38.22 59.676±22.55 37.986±7.83
ENSG00000260536 ENST00000565572 N/A N/A 0.597±0.00 0.286±0.00 N/A 0.830±0.00 N/A N/A 0.378±0.33 1.425±0.00 N/A 0.355±0.00 N/A 1.015±0.21
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027478 ENSMUST00000056495 N/A N/A N/A N/A N/A N/A N/A 0.117±0.03 0.266±0.08 N/A N/A 0.446±0.10 0.595±0.16 N/A
ENSMUST00000072997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A N/A N/A
ENSMUST00000081628 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.395±0.00 N/A 0.440±0.00 N/A N/A
ENSMUST00000088976 N/A N/A N/A N/A N/A N/A N/A 0.163±0.03 0.457±0.00 N/A N/A N/A 1.422±0.00 N/A
ENSMUST00000103150 0.285±0.14 0.332±0.14 0.174±0.03 0.246±0.00 0.360±0.11 0.335±0.17 N/A 0.233±0.00 0.525±0.19 0.541±0.23 N/A 1.097±0.45 2.198±1.12 0.226±0.00
ENSMUST00000103151 0.447±0.22 0.149±0.05 0.315±0.05 0.643±0.10 0.713±0.00 0.467±0.18 0.082±0.00 N/A 1.416±0.52 0.283±0.09 0.123±0.10 0.802±0.43 1.223±0.24 0.428±0.09
ENSMUST00000109771 0.834±0.19 N/A 0.203±0.03 0.336±0.00 0.296±0.00 0.341±0.07 0.106±0.03 0.128±0.00 0.620±0.36 0.324±0.04 0.055±0.01 0.804±0.13 2.381±1.98 0.198±0.03
ENSMUST00000109772 N/A N/A N/A N/A N/A N/A N/A 0.252±0.00 0.230±0.00 N/A 0.088±0.01 0.452±0.14 1.379±0.60 N/A
ENSMUST00000109773 0.122±0.00 N/A 0.112±0.00 N/A N/A N/A N/A 0.129±0.00 N/A 0.115±0.00 0.151±0.04 0.786±0.00 N/A 0.547±0.08
ENSMUST00000109774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000027479 ENSMUST00000028981 10.031±1.84 5.489±0.60 14.814±0.97 13.608±7.22 7.572±0.77 8.332±0.44 4.525±0.14 6.629±0.61 6.854±5.35 10.463±0.46 4.316±0.64 10.923±3.08 12.530±6.32 4.741±0.69
ENSMUST00000123570 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123795 N/A N/A N/A 43.804±0.00 N/A N/A N/A N/A N/A N/A N/A 81.554±0.00 203.708±116.55 N/A
ENSMUSG00000079000 ENSMUST00000124988 0.090±0.00 N/A 0.342±0.06 0.023±0.00 0.147±0.06 0.392±0.16 N/A 0.566±0.11 0.086±0.04 0.361±0.05 N/A 0.270±0.06 0.286±0.17 0.104±0.03
ENSMUSG00000082079 ENSMUST00000119996 N/A 0.071±0.02 N/A 0.024±0.01 0.022±0.00 N/A 0.014±0.00 0.049±0.01 0.316±0.22 0.067±0.01 0.012±0.00 0.087±0.03 0.035±0.01 0.256±0.06

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