C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001KD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171490-ENSG00000103342 CGP 9606 16:11833850-11916082
GeneTranscriptPositionBiotype
ENSG00000103342 (GSPT1)
G1 to S phase transition 1 		ENST00000420576 (GSPT1-003) 11873119-11916082 protein_coding
ENST00000434724 (GSPT1-001) 11868128-11915920 protein_coding
ENST00000439887 (GSPT1-002) 11872679-11915878 protein_coding
ENST00000562169 (GSPT1-007) 11896616-11915203 protein_coding
ENST00000562794 (GSPT1-010) 11883015-11886961 retained_intron
ENST00000563468 (GSPT1-005) 11872684-11897888 protein_coding
ENST00000564790 (GSPT1-009) 11880225-11886904 processed_transcript
ENST00000565267 (GSPT1-004) 11872682-11897881 protein_coding
ENST00000567631 (GSPT1-008) 11890793-11895284 retained_intron
ENST00000568849 (GSPT1-006) 11887607-11915210 protein_coding
ENSG00000171490 (RSL1D1)
ribosomal L1 domain containing 1 		ENST00000355674 (RSL1D1-002) 11837966-11851544 protein_coding
ENST00000396503 (RSL1D1-003) 11837718-11851580 nonsense_mediated_decay
ENST00000570767 (RSL1D1-007) 11841708-11851542 nonsense_mediated_decay
ENST00000571133 (RSL1D1-001) 11833850-11851585 protein_coding
ENST00000571988 (RSL1D1-009) 11846560-11851045 protein_coding
ENST00000572090 (RSL1D1-004) 11846501-11851508 nonsense_mediated_decay
ENST00000573029 (RSL1D1-005) 11837970-11851518 nonsense_mediated_decay
ENST00000573251 (RSL1D1-011) 11839849-11851516 protein_coding
ENST00000573618 (RSL1D1-006) 11837955-11851518 nonsense_mediated_decay
ENST00000573791 (RSL1D1-008) 11846734-11851232 protein_coding
ENST00000574287 (RSL1D1-010) 11847574-11851519 retained_intron
ENST00000574823 (RSL1D1-012) 11841406-11846567 retained_intron
ENSG00000260318 (COX6CP1)
cytochrome c oxidase subunit VIc pseudogene 1 		ENST00000564972 (COX6CP1-001) 11903923-11904137 processed_pseudogene
ENSG00000261216 (RP11-166B2.5)
 ENST00000562802 (RP11-166B2.5-001) 11908208-11908916 antisense
ENSG00000261560 (RP11-166B2.3)
 ENST00000568144 (RP11-166B2.3-001) 11881075-11882569 sense_intronic
ENSG00000263307 (RP11-166B2.8)
 ENST00000574364 (RP11-166B2.8-001) 11851649-11895611 antisense
CIL_0001KD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000005846-ENSMUSG00000062203 CGP 10090 16:11192970-11254270
GeneTranscriptPositionBiotype
ENSMUSG00000005846 (Rsl1d1)
ribosomal L1 domain containing 1 		ENSMUST00000119953 (Rsl1d1-001) 11192970-11203331 protein_coding
ENSMUST00000124454 (Rsl1d1-003) 11196444-11203264 retained_intron
ENSMUST00000129962 (Rsl1d1-002) 11193505-11194995 retained_intron
ENSMUSG00000062203 (Gspt1)
G1 to S phase transition 1 		ENSMUST00000080030 (Gspt1-002) 11220052-11254209 protein_coding
ENSMUST00000164098 (Gspt1-004) 11222585-11228517 retained_intron
ENSMUST00000166063 (Gspt1-003) 11230912-11237820 retained_intron
ENSMUST00000167025 (Gspt1-005) 11220401-11224498 protein_coding
ENSMUST00000167571 (Gspt1-001) 11219292-11254270 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001KD_0001ENSG00000103342ENST00000420576ENST00000434724ENST00000439887ENST00000562169ENST00000562794ENST00000563468ENST00000564790ENST00000565267ENST00000567631ENST00000568849ENSG00000171490ENST00000355674ENST00000396503ENST00000570767ENST00000571133ENST00000571988ENST00000572090ENST00000573029ENST00000573251ENST00000573618ENST00000573791ENST00000574287ENST00000574823ENSG00000260318ENST00000564972ENSG00000261216ENST00000562802ENSG00000261560ENST00000568144ENSG00000263307ENST00000574364CIL_0001KD_0002ENSMUSG00000005846ENSMUST00000119953ENSMUST00000124454ENSMUST00000129962ENSMUSG00000062203ENSMUST00000080030ENSMUST00000164098ENSMUST00000166063ENSMUST00000167025ENSMUST00000167571
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001KD_0001ENSG00000103342ENST00000420576ENST00000434724ENST00000439887ENST00000562794ENST00000563468ENST00000565267ENSG00000171490ENST00000355674ENST00000396503ENST00000571133ENST00000573029ENST00000573618ENSG00000260318ENST00000564972ENSG00000261216ENST00000562802ENSG00000261560ENST00000568144ENSG00000263307ENST00000574364CIL_0001KD_0002ENSMUSG00000005846ENSMUST00000119953ENSMUST00000124454ENSMUST00000129962ENSMUSG00000062203ENSMUST00000080030ENSMUST00000164098ENSMUST00000166063ENSMUST00000167025ENSMUST00000167571
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000103342 ENST00000420576 N/A N/A 3.665±0.00 N/A 9.657±0.00 N/A 2.283±0.00 N/A 6.781±0.00 N/A N/A 25.645±0.00 25.504±0.00 31.260±0.00
ENST00000434724 7.452±0.00 4.418±0.00 3.339±0.00 5.241±0.11 6.629±1.39 6.565±0.48 4.007±1.92 4.933±2.38 5.164±0.00 6.112±1.63 7.537±3.00 5.144±2.38 3.334±0.29 N/A
ENST00000439887 N/A N/A N/A N/A 4.580±0.00 N/A 8.556±0.00 N/A 5.391±2.82 13.794±0.00 18.018±0.00 N/A 6.001±0.62 10.093±0.00
ENST00000562169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562794 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.214±0.00 N/A N/A N/A
ENST00000563468 19.238±0.00 11.354±0.00 2.159±0.00 8.971±1.33 19.850±0.00 13.634±6.10 7.809±5.55 15.583±3.48 12.364±0.00 12.124±2.06 24.193±0.00 12.466±1.22 11.233±3.11 18.597±2.16
ENST00000564790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565267 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.883±0.00
ENST00000567631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000171490 ENST00000355674 N/A N/A 2.779±0.00 3.403±0.00 7.723±0.00 5.837±0.00 3.707±0.00 4.187±0.00 7.172±0.00 4.224±0.00 2.363±0.00 11.634±5.03 18.409±0.00 12.081±0.00
ENST00000396503 35.059±0.00 27.894±0.00 2.082±0.00 5.586±2.41 16.822±9.90 24.483±18.07 12.668±11.35 12.399±5.93 9.048±3.82 5.007±3.47 43.809±42.61 25.016±26.44 8.989±0.00 20.538±12.29
ENST00000570767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571133 6.476±0.00 N/A 0.427±0.00 3.976±1.87 1.872±0.29 3.721±3.16 3.242±2.28 2.590±1.72 2.216±0.12 2.679±1.55 11.983±10.22 4.791±3.98 2.674±0.35 5.286±1.55
ENST00000571988 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.555±0.00 9.944±0.00 6.844±0.00
ENST00000573251 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573618 33.978±0.00 28.473±0.00 N/A 13.425±0.00 22.668±0.00 33.555±0.00 N/A 17.981±0.00 N/A N/A N/A 56.637±0.00 N/A 35.879±0.00
ENST00000573791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000260318 ENST00000564972 0.304±0.00 0.632±0.00 1.619±0.00 0.911±0.25 2.780±1.61 0.353±0.00 0.726±0.00 1.291±0.00 2.215±1.93 8.780±8.10 1.053±0.00 4.251±3.43 0.344±0.14 1.551±1.19
ENSG00000261216 ENST00000562802 4.212±0.00 9.789±0.00 0.183±0.00 6.247±0.00 2.627±2.32 2.014±0.72 3.104±0.00 5.019±0.00 1.871±0.00 4.185±0.00 2.116±0.00 0.569±0.31 0.095±0.00 2.640±1.96
ENSG00000261560 ENST00000568144 0.180±0.00 0.753±0.00 N/A 0.251±0.00 0.611±0.05 0.102±0.05 0.128±0.02 0.244±0.00 0.041±0.03 0.143±0.06 0.384±0.19 0.333±0.14 0.042±0.01 0.412±0.19
ENSG00000263307 ENST00000574364 0.127±0.00 0.869±0.00 1.340±0.00 0.263±0.10 0.687±0.10 1.758±0.00 0.360±0.23 N/A 0.298±0.00 0.899±0.13 N/A 0.531±0.20 N/A 0.647±0.33
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005846 ENSMUST00000119953 7.267±1.96 2.030±0.34 25.263±3.20 19.608±8.06 5.194±1.94 3.231±0.52 6.730±0.56 5.447±1.39 19.661±18.06 4.668±0.41 17.431±0.90 10.561±11.91 32.904±11.80 5.067±0.90
ENSMUST00000124454 N/A N/A N/A N/A N/A 1.717±0.00 N/A N/A 2.912±0.64 N/A N/A 2.076±0.22 N/A 1.651±0.00
ENSMUST00000129962 N/A 1.782±0.06 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.530±0.52 N/A N/A
ENSMUSG00000062203 ENSMUST00000080030 2.770±0.56 52.479±20.67 9.620±2.36 7.255±2.20 5.907±3.25 N/A 1.289±0.00 2.065±0.00 9.232±5.46 N/A 5.528±1.05 32.556±13.07 42.578±17.01 28.703±0.00
ENSMUST00000164098 N/A N/A N/A N/A 3.466±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166063 N/A N/A N/A 59.348±0.00 N/A N/A N/A N/A N/A N/A N/A 183.279±0.00 217.407±80.41 95.140±0.00
ENSMUST00000167025 N/A N/A N/A N/A 9.179±0.00 N/A 6.818±0.64 N/A N/A N/A N/A N/A 26.636±0.00 6.603±0.00
ENSMUST00000167571 6.397±2.73 54.929±9.90 8.288±3.87 7.336±0.00 2.474±0.72 17.743±2.78 2.717±1.18 6.960±4.45 8.836±4.39 8.502±1.51 N/A 18.553±16.61 8.842±2.42 2.454±0.71

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