C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001KO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196743-ENSG00000186334 CGP 9606 5:151212150-151303766
GeneTranscriptPositionBiotype
ENSG00000186334 (SLC36A3)
solute carrier family 36, member 3 		ENST00000335230 (SLC36A3-001) 151276762-151303766 protein_coding
ENST00000377713 (SLC36A3-002) 151277351-151303496 protein_coding
ENST00000423071 (SLC36A3-003) 151277148-151298264 retained_intron
ENSG00000196743 (GM2A)
GM2 ganglioside activator 		ENST00000357164 (GM2A-001) 151252892-151270440 protein_coding
ENST00000523004 (GM2A-002) 151259799-151267255 protein_coding
ENST00000523466 (GM2A-004) 151212150-151266880 protein_coding
ENSG00000198624 (CCDC69)
coiled-coil domain containing 69 		ENST00000355417 (CCDC69-001) 151181052-151224145 protein_coding
ENST00000518189 (CCDC69-004) 151181393-151205477 nonsense_mediated_decay
ENST00000519448 (CCDC69-005) 151181235-151185215 retained_intron
ENST00000519740 (CCDC69-006) 151215566-151224092 nonsense_mediated_decay
ENST00000521308 (CCDC69-002) 151181052-151224093 processed_transcript
ENST00000522179 (CCDC69-007) 151205400-151211145 processed_transcript
ENST00000522964 (CCDC69-009) 151185422-151205475 nonsense_mediated_decay
ENST00000524344 (CCDC69-008) 151198842-151205475 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0001KO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000594-ENSMUSG00000049491 CGP 10090 11:55098115-55151708
GeneTranscriptPositionBiotype
ENSMUSG00000000594 (Gm2a)
GM2 ganglioside activator protein 		ENSMUST00000000608 (Gm2a-001) 55098115-55113029 protein_coding
ENSMUSG00000044751 (Gm12231)
predicted gene 12231 		ENSMUST00000119447 (Gm12231-001) 55118101-55118795 processed_pseudogene
ENSMUSG00000049491 (Slc36a3)
solute carrier family 36 (proton/amino acid symporter), member 3 		ENSMUST00000020502 (Slc36a3-001) 55124815-55151708 protein_coding
ENSMUST00000069816 (Slc36a3-002) 55149491-55151708 protein_coding
ENSMUST00000128244 (Slc36a3-003) 55124825-55151686 nonsense_mediated_decay
ENSMUSG00000080738 (Mup-ps22)
major urinary protein, pseudogene 22 		ENSMUST00000121611 (Mup-ps22-001) 55123695-55123937 processed_pseudogene
ENSMUSG00000085531 (Slc36a3os)
solute carrier family 36 (proton/amino acid symporter), member 3, opposite strand 		ENSMUST00000155883 (Slc36a3os-001) 55137044-55140193 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001KO_0001ENSG00000186334ENST00000335230ENST00000377713ENST00000423071ENSG00000196743ENST00000357164ENST00000523004ENST00000523466ENSG00000198624ENST00000355417ENST00000518189ENST00000519448ENST00000519740ENST00000521308ENST00000522179ENST00000522964ENST00000524344CIL_0001KO_0002ENSMUSG00000000594ENSMUST00000000608ENSMUSG00000044751ENSMUST00000119447ENSMUSG00000049491ENSMUST00000020502ENSMUST00000069816ENSMUST00000128244ENSMUSG00000080738ENSMUST00000121611ENSMUSG00000085531ENSMUST00000155883
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001KO_0001ENSG00000186334ENST00000335230ENST00000377713ENST00000423071ENSG00000196743ENST00000357164ENSG00000198624ENST00000355417ENST00000518189ENST00000519448ENST00000521308CIL_0001KO_0002ENSMUSG00000000594ENSMUST00000000608ENSMUSG00000044751ENSMUST00000119447ENSMUSG00000049491ENSMUST00000020502ENSMUST00000069816ENSMUST00000128244ENSMUSG00000080738ENSMUST00000121611ENSMUSG00000085531ENSMUST00000155883
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000186334 ENST00000335230 N/A 0.042±0.00 N/A 0.012±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.768±0.00
ENST00000377713 0.060±0.00 0.039±0.00 N/A N/A 0.037±0.00 N/A N/A 0.018±0.00 N/A 0.125±0.00 N/A 0.100±0.10 N/A 4.302±3.28
ENST00000423071 0.007±0.00 0.094±0.00 N/A 0.026±0.01 0.044±0.02 0.014±0.00 0.011±0.00 0.012±0.00 0.010±0.00 N/A N/A 0.024±0.02 0.107±0.00 N/A
ENSG00000196743 ENST00000357164 6.806±0.00 6.955±0.00 N/A 2.672±1.79 10.980±8.26 3.610±0.00 4.018±2.93 2.429±1.12 4.337±0.00 8.819±4.52 1.609±0.52 6.043±1.88 42.800±14.20 3.917±1.42
ENST00000523004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198624 ENST00000355417 36.545±0.00 26.150±0.00 N/A 2.572±2.16 26.101±23.65 28.978±26.28 37.155±34.23 4.149±1.47 16.905±2.68 30.040±25.99 17.113±6.19 11.005±9.09 16.106±2.76 5.848±0.48
ENST00000518189 N/A N/A N/A N/A N/A N/A 1.152±0.00 N/A N/A N/A N/A N/A 3.713±0.00 N/A
ENST00000519448 N/A N/A 0.183±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.456±0.00 N/A N/A
ENST00000519740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521308 45.446±0.00 25.436±0.00 0.687±0.00 N/A 38.028±0.00 44.171±0.00 N/A N/A 6.426±0.00 N/A N/A 8.294±0.00 N/A 10.428±0.00
ENST00000522179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524344 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000594 ENSMUST00000000608 70.846±13.89 150.543±9.62 25.299±2.43 4.390±1.27 77.621±26.14 23.382±1.30 7.664±2.12 114.502±12.81 28.097±21.71 42.008±2.24 2.330±0.44 228.772±68.78 104.912±29.32 34.061±25.10
ENSMUSG00000044751 ENSMUST00000119447 2.784±0.67 0.397±0.33 1.128±0.46 1.497±1.04 1.903±0.89 1.048±0.43 5.023±1.01 2.793±0.68 1.945±1.37 0.747±0.26 0.636±0.24 0.539±0.51 0.171±0.11 0.610±0.20
ENSMUSG00000049491 ENSMUST00000020502 0.027±0.01 0.052±0.04 0.013±0.01 N/A 0.163±0.05 0.046±0.02 0.013±0.00 0.031±0.01 0.014±0.01 0.079±0.02 N/A 0.751±0.28 0.090±0.05 19.277±11.62
ENSMUST00000069816 0.011±0.00 N/A N/A N/A N/A N/A N/A N/A 0.011±0.00 N/A N/A N/A N/A N/A
ENSMUST00000128244 N/A 0.018±0.00 N/A N/A 0.059±0.00 0.041±0.00 N/A N/A 0.002±0.00 0.089±0.00 N/A 1.194±0.00 0.012±0.00 N/A
ENSMUSG00000080738 ENSMUST00000121611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.437±0.08 N/A 1.633±0.00
ENSMUSG00000085531 ENSMUST00000155883 0.202±0.11 N/A 0.102±0.00 N/A 0.362±0.10 0.142±0.00 0.173±0.00 N/A 0.060±0.05 0.175±0.09 0.318±0.00 0.722±0.53 0.589±0.35 0.299±0.20

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