C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001KW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000147649-ENSG00000104341 CGP 9606 8:97644179-97853013
GeneTranscriptPositionBiotype
ENSG00000104341 (LAPTM4B)
lysosomal protein transmembrane 4 beta 		ENST00000445593 (LAPTM4B-001) 97775057-97853013 protein_coding
ENST00000517924 (LAPTM4B-003) 97775849-97819164 protein_coding
ENST00000521545 (LAPTM4B-002) 97775776-97851474 protein_coding
ENST00000619747 (LAPTM4B-201) 97775057-97852598 protein_coding
ENSG00000147649 (MTDH)
metadherin 		ENST00000336273 (MTDH-001) 97644179-97728770 protein_coding
ENST00000519293 (MTDH-004) 97691019-97724652 nonsense_mediated_decay
ENST00000519934 (MTDH-002) 97644546-97725243 protein_coding
ENST00000521933 (MTDH-006) 97691131-97724617 protein_coding
ENST00000522104 (MTDH-005) 97706412-97719087 retained_intron
ENST00000522313 (MTDH-003) 97644793-97691164 protein_coding
ENSG00000202399 (Y_RNA)
Y RNA 		ENST00000365529 (Y_RNA.1-565) 97772313-97772425 misc_RNA
ENSG00000270682 (KB-1907C4.2)
 ENST00000604497 (KB-1907C4.2-001) 97788210-97788357 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0001KW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022255-ENSMUSG00000022257 CGP 10090 15:34082694-34284295
GeneTranscriptPositionBiotype
ENSMUSG00000022255 (Mtdh)
metadherin 		ENSMUST00000022865 (Mtdh-001) 34082719-34142386 protein_coding
ENSMUST00000163333 (Mtdh-005) 34083308-34136780 protein_coding
ENSMUST00000163697 (Mtdh-003) 34082725-34124352 retained_intron
ENSMUST00000168991 (Mtdh-010) 34083036-34134344 nonsense_mediated_decay
ENSMUST00000169905 (Mtdh-006) 34114942-34140710 protein_coding
ENSMUST00000170050 (Mtdh-008) 34083319-34136811 protein_coding
ENSMUST00000170553 (Mtdh-009) 34083322-34123750 protein_coding
ENSMUST00000171711 (Mtdh-004) 34133490-34141283 processed_transcript
ENSMUST00000172082 (Mtdh-002) 34082694-34103345 retained_intron
ENSMUST00000172083 (Mtdh-007) 34083853-34117997 processed_transcript
ENSMUSG00000022257 (Laptm4b)
lysosomal-associated protein transmembrane 4B 		ENSMUST00000022867 (Laptm4b-201) 34238026-34284295 protein_coding
ENSMUSG00000089072 (Gm24500)
predicted gene, 24500 		ENSMUST00000158447 (Gm24500-201) 34139253-34139376 snoRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001KW_0001ENSG00000104341ENST00000445593ENST00000517924ENST00000521545ENST00000619747ENSG00000147649ENST00000336273ENST00000519293ENST00000519934ENST00000521933ENST00000522104ENST00000522313ENSG00000202399ENST00000365529ENSG00000270682ENST00000604497CIL_0001KW_0002ENSMUSG00000022255ENSMUST00000022865ENSMUST00000163333ENSMUST00000163697ENSMUST00000168991ENSMUST00000169905ENSMUST00000170050ENSMUST00000170553ENSMUST00000171711ENSMUST00000172082ENSMUST00000172083ENSMUSG00000022257ENSMUST00000022867ENSMUSG00000089072ENSMUST00000158447
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001KW_0001ENSG00000104341ENST00000445593ENST00000517924ENST00000521545ENST00000619747ENSG00000147649ENST00000336273ENST00000519934ENST00000522313ENSG00000202399ENST00000365529ENSG00000270682ENST00000604497CIL_0001KW_0002ENSMUSG00000022255ENSMUST00000022865ENSMUST00000163333ENSMUST00000163697ENSMUST00000168991ENSMUST00000169905ENSMUST00000170050ENSMUST00000170553ENSMUST00000171711ENSMUST00000172082ENSMUSG00000022257ENSMUST00000022867ENSMUSG00000089072ENSMUST00000158447
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104341 ENST00000445593 N/A N/A N/A N/A N/A 0.871±0.00 N/A N/A N/A N/A 1.306±0.00 10.774±0.00 N/A N/A
ENST00000517924 N/A N/A N/A N/A N/A N/A N/A 2.790±0.00 N/A N/A N/A N/A N/A N/A
ENST00000521545 N/A N/A 5.211±0.00 8.835±0.00 9.000±0.00 N/A 15.151±0.00 N/A 6.340±0.00 N/A 20.581±0.00 11.017±0.00 7.035±0.00 N/A
ENST00000619747 17.390±0.00 38.522±0.00 3.327±0.00 13.822±9.06 9.511±6.30 12.047±7.75 37.023±26.37 26.206±25.53 3.344±0.76 12.959±9.59 16.005±7.57 30.296±14.32 11.622±2.43 29.907±4.63
ENSG00000147649 ENST00000336273 8.080±0.00 8.122±0.00 3.175±0.00 5.899±0.43 9.045±0.44 7.986±0.22 4.103±1.04 8.170±0.60 8.210±0.21 7.427±1.67 5.043±3.26 10.946±2.49 3.569±1.07 7.064±1.55
ENST00000519293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519934 9.562±0.00 N/A 7.640±0.00 7.394±1.38 8.787±0.01 8.381±1.11 5.362±1.95 8.996±0.89 8.008±0.13 9.064±0.06 4.600±1.16 8.252±2.09 2.536±0.57 6.790±2.52
ENST00000521933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522313 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.360±0.00 7.563±0.00 15.684±0.00
ENSG00000202399 ENST00000365529 N/A N/A N/A 0.146±0.00 N/A N/A 0.132±0.00 0.284±0.00 N/A N/A N/A 1.239±0.00 N/A N/A
ENSG00000270682 ENST00000604497 0.215±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022255 ENSMUST00000022865 8.528±3.11 9.434±5.35 18.656±1.48 11.695±0.50 14.475±6.49 12.429±2.91 4.488±0.00 4.272±1.98 8.097±3.86 10.443±3.60 15.052±4.85 5.820±1.75 11.760±5.89 13.849±1.39
ENSMUST00000163333 N/A N/A N/A 9.160±0.00 N/A N/A N/A N/A N/A N/A N/A 12.385±0.00 12.247±0.00 42.115±0.00
ENSMUST00000163697 N/A N/A N/A 2.472±0.04 N/A N/A N/A N/A 1.045±0.00 N/A N/A 2.614±0.43 N/A N/A
ENSMUST00000168991 N/A N/A N/A N/A 8.492±0.00 N/A N/A N/A N/A N/A N/A 18.211±0.00 25.704±1.38 25.029±0.00
ENSMUST00000169905 N/A N/A N/A N/A 5.580±0.00 N/A 4.556±0.00 N/A N/A N/A N/A N/A N/A 18.087±1.37
ENSMUST00000170050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.179±0.00 N/A N/A
ENSMUST00000170553 N/A N/A N/A 22.604±0.00 N/A N/A N/A N/A N/A N/A N/A 22.473±0.00 29.698±3.08 41.271±0.00
ENSMUST00000171711 N/A N/A N/A 13.620±0.00 N/A N/A N/A N/A N/A N/A N/A 16.972±0.00 22.031±6.76 20.089±8.17
ENSMUST00000172082 N/A 4.846±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000022257 ENSMUST00000022867 113.282±24.53 263.789±21.28 75.397±5.65 20.870±0.74 66.179±9.61 69.371±5.86 49.937±4.66 62.009±8.17 15.460±6.68 62.646±2.61 13.552±1.36 110.065±38.20 17.216±10.27 49.788±23.55
ENSMUSG00000089072 ENSMUST00000158447 N/A N/A N/A N/A 1800.380±0.00 N/A N/A N/A 14.655±0.00 N/A N/A 27.640±0.00 11.540±0.00 N/A

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