| Source ID |
Type |
Tax ID |
Position |
| ENSG00000013563-ENSG00000102125 |
CGP |
9606 |
X:154401238-154421726  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0001LA_0001 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0001LA_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000013563' => 'deoxyribonuclease I-like 1',
'ENSG00000102125' => 'tafazzin',
'ENSG00000147403' => 'ribosomal protein L10',
'ENSMUSG00000009995' => 'tafazzin',
'ENSMUSG00000019088' => 'deoxyribonuclease 1-like 1',
'ENSMUSG00000084271' => 'predicted gene 14846',
'ENSMUSG00000099226' => 'microRNA 7091'
),
'gene_name_arr' => array(
'ENSG00000013563' => 'DNASE1L1',
'ENSG00000102125' => 'TAZ',
'ENSG00000147403' => 'RPL10',
'ENSMUSG00000009995' => 'Taz',
'ENSMUSG00000019088' => 'Dnase1l1',
'ENSMUSG00000084271' => 'Gm14846',
'ENSMUSG00000099226' => 'Mir7091'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 19 => 'Bladder',
(int) 27 => 'Brain',
(int) 39 => 'Breast',
(int) 52 => 'Colon',
(int) 63 => 'Heart',
(int) 74 => 'Kidney',
(int) 84 => 'Liver',
(int) 96 => 'Lung',
(int) 105 => 'Muscle',
(int) 115 => 'Ovary',
(int) 133 => 'Placenta',
(int) 147 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 85,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000014935' => array(
'start' => '154401758',
'end' => '154410039',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-001'
),
'ENST00000309585' => array(
'start' => '154401761',
'end' => '154412112',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-004'
),
'ENST00000369807' => array(
'start' => '154401758',
'end' => '154409276',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-006'
),
'ENST00000369808' => array(
'start' => '154401758',
'end' => '154409278',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-002'
),
'ENST00000369809' => array(
'start' => '154401238',
'end' => '154412090',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-201'
),
'ENST00000393638' => array(
'start' => '154401238',
'end' => '154412090',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-202'
),
'ENST00000412184' => array(
'start' => '154403138',
'end' => '154405618',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-011'
),
'ENST00000424626' => array(
'start' => '154404828',
'end' => '154412091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-003'
),
'ENST00000432135' => array(
'start' => '154405489',
'end' => '154412089',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-005'
),
'ENST00000447892' => array(
'start' => '154402722',
'end' => '154405610',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-010'
),
'ENST00000451865' => array(
'start' => '154403092',
'end' => '154412083',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-009'
),
'ENST00000497242' => array(
'start' => '154402487',
'end' => '154403596',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DNASE1L1-007'
),
'ENST00000369776' => array(
'start' => '154411759',
'end' => '154421726',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-006'
),
'ENST00000426231' => array(
'start' => '154412161',
'end' => '154420992',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TAZ-018'
),
'ENST00000439735' => array(
'start' => '154411830',
'end' => '154420094',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-027'
),
'ENST00000470127' => array(
'start' => '154413529',
'end' => '154420141',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TAZ-022'
),
'ENST00000475699' => array(
'start' => '154411541',
'end' => '154421726',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-003'
),
'ENST00000476679' => array(
'start' => '154412715',
'end' => '154419952',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-019'
),
'ENST00000476800' => array(
'start' => '154413091',
'end' => '154414141',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-020'
),
'ENST00000479875' => array(
'start' => '154412721',
'end' => '154413567',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TAZ-013'
),
'ENST00000483674' => array(
'start' => '154413489',
'end' => '154419730',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-007'
),
'ENST00000483780' => array(
'start' => '154412203',
'end' => '154419786',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-021'
),
'ENST00000494912' => array(
'start' => '154418475',
'end' => '154421722',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-008'
),
'ENST00000498029' => array(
'start' => '154419991',
'end' => '154421324',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-024'
),
'ENST00000601016' => array(
'start' => '154411556',
'end' => '154421726',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-001'
),
'ENST00000612012' => array(
'start' => '154411556',
'end' => '154420073',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-012'
),
'ENST00000612460' => array(
'start' => '154411556',
'end' => '154421720',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-002'
),
'ENST00000613002' => array(
'start' => '154411541',
'end' => '154421439',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-004'
),
'ENST00000613634' => array(
'start' => '154411524',
'end' => '154420042',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-014'
),
'ENST00000614595' => array(
'start' => '154411625',
'end' => '154412683',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-017'
),
'ENST00000615658' => array(
'start' => '154411518',
'end' => '154420081',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-010'
),
'ENST00000615986' => array(
'start' => '154411561',
'end' => '154421726',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TAZ-005'
),
'ENST00000616020' => array(
'start' => '154411541',
'end' => '154414188',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-011'
),
'ENST00000617701' => array(
'start' => '154411562',
'end' => '154413567',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TAZ-015'
),
'ENST00000620808' => array(
'start' => '154411574',
'end' => '154420077',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TAZ-016'
),
'ENST00000621647' => array(
'start' => '154411559',
'end' => '154413669',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-009'
),
'ENST00000344746' => array(
'start' => '154398372',
'end' => '154402339',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-001'
),
'ENST00000369817' => array(
'start' => '154397154',
'end' => '154400917',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-008'
),
'ENST00000406022' => array(
'start' => '154398890',
'end' => '154400909',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-011'
),
'ENST00000424325' => array(
'start' => '154398230',
'end' => '154402339',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-201'
),
'ENST00000427682' => array(
'start' => '154399883',
'end' => '154403497',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-018'
),
'ENST00000428169' => array(
'start' => '154399883',
'end' => '154409168',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-020'
),
'ENST00000436473' => array(
'start' => '154398367',
'end' => '154400811',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-015'
),
'ENST00000449494' => array(
'start' => '154399883',
'end' => '154403490',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-019'
),
'ENST00000451365' => array(
'start' => '154399366',
'end' => '154403697',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-017'
),
'ENST00000458500' => array(
'start' => '154398378',
'end' => '154400917',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-009'
),
'ENST00000467168' => array(
'start' => '154398497',
'end' => '154400913',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-012'
),
'ENST00000474786' => array(
'start' => '154389955',
'end' => '154400166',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-004'
),
'ENST00000479366' => array(
'start' => '154397749',
'end' => '154398619',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'RPL10-016'
),
'ENST00000482732' => array(
'start' => '154398388',
'end' => '154400913',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-003'
),
'ENST00000485196' => array(
'start' => '154398379',
'end' => '154400817',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-010'
),
'ENST00000489200' => array(
'start' => '154398377',
'end' => '154400898',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-006'
),
'ENST00000491035' => array(
'start' => '154398377',
'end' => '154400913',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-005'
),
'ENST00000492572' => array(
'start' => '154398496',
'end' => '154400897',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-013'
),
'ENST00000618723' => array(
'start' => '154398230',
'end' => '154402339',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-202'
),
'ENSMUST00000069722' => array(
'start' => '74282697',
'end' => '74290151',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-001'
),
'ENSMUST00000114180' => array(
'start' => '74282762',
'end' => '74290148',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-015'
),
'ENSMUST00000114182' => array(
'start' => '74283082',
'end' => '74289485',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-021'
),
'ENSMUST00000124200' => array(
'start' => '74282750',
'end' => '74290148',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-002'
),
'ENSMUST00000124915' => array(
'start' => '74288020',
'end' => '74289734',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Taz-008'
),
'ENSMUST00000125972' => array(
'start' => '74282921',
'end' => '74288844',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-017'
),
'ENSMUST00000131116' => array(
'start' => '74288072',
'end' => '74289888',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-007'
),
'ENSMUST00000132437' => array(
'start' => '74282772',
'end' => '74289158',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-014'
),
'ENSMUST00000134432' => array(
'start' => '74288662',
'end' => '74289731',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Taz-009'
),
'ENSMUST00000134914' => array(
'start' => '74282789',
'end' => '74284314',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-016'
),
'ENSMUST00000134936' => array(
'start' => '74282760',
'end' => '74288704',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-006'
),
'ENSMUST00000135012' => array(
'start' => '74281912',
'end' => '74282915',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Taz-011'
),
'ENSMUST00000135504' => array(
'start' => '74283008',
'end' => '74289400',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-020'
),
'ENSMUST00000146260' => array(
'start' => '74281912',
'end' => '74282865',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Taz-012'
),
'ENSMUST00000147844' => array(
'start' => '74282766',
'end' => '74283969',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-005'
),
'ENSMUST00000149055' => array(
'start' => '74282750',
'end' => '74285887',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-010'
),
'ENSMUST00000153459' => array(
'start' => '74287665',
'end' => '74288609',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-018'
),
'ENSMUST00000156072' => array(
'start' => '74282760',
'end' => '74288279',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-013'
),
'ENSMUST00000156212' => array(
'start' => '74282750',
'end' => '74290148',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-003'
),
'ENSMUST00000156788' => array(
'start' => '74288673',
'end' => '74289681',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-019'
),
'ENSMUST00000156880' => array(
'start' => '74282750',
'end' => '74288035',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-004'
),
'ENSMUST00000176453' => array(
'start' => '74283937',
'end' => '74289348',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-022'
),
'ENSMUST00000019232' => array(
'start' => '74273217',
'end' => '74281736',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnase1l1-001'
),
'ENSMUST00000075821' => array(
'start' => '74273218',
'end' => '74282337',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnase1l1-002'
),
'ENSMUST00000114189' => array(
'start' => '74273319',
'end' => '74281598',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnase1l1-008'
),
'ENSMUST00000119361' => array(
'start' => '74273973',
'end' => '74281675',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnase1l1-006'
),
'ENSMUST00000128763' => array(
'start' => '74274368',
'end' => '74276846',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dnase1l1-009'
),
'ENSMUST00000148882' => array(
'start' => '74276785',
'end' => '74281626',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dnase1l1-007'
),
'ENSMUST00000121868' => array(
'start' => '74278654',
'end' => '74278869',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14846-001'
),
'ENSMUST00000184075' => array(
'start' => '74274027',
'end' => '74274105',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir7091-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0001LA_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0001LA_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000009995' => array(
[maximum depth reached]
),
'ENSMUSG00000019088' => array(
[maximum depth reached]
),
'ENSMUSG00000084271' => array(
[maximum depth reached]
),
'ENSMUSG00000099226' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Breast',
(int) 16 => 'Muscle',
(int) 17 => 'Placenta',
(int) 18 => 'Adipose',
(int) 19 => 'Bladder',
(int) 20 => 'Brain',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Heart',
(int) 24 => 'Kidney',
(int) 25 => 'Liver',
(int) 26 => 'Lung',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Testis',
(int) 32 => 'Adrenal',
(int) 33 => 'Colon',
(int) 34 => 'Liver',
(int) 35 => 'Ovary',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Ovary',
(int) 39 => 'Placenta',
(int) 40 => 'Testis',
(int) 41 => 'Adrenal',
(int) 42 => 'Breast',
(int) 43 => 'Colon',
(int) 44 => 'Ovary',
(int) 45 => 'Testis',
(int) 46 => 'Brain',
(int) 47 => 'Adipose',
(int) 48 => 'Adrenal',
(int) 49 => 'Breast',
(int) 50 => 'Colon',
(int) 51 => 'Heart',
(int) 52 => 'Kidney',
(int) 53 => 'Liver',
(int) 54 => 'Lung',
(int) 55 => 'Ovary',
(int) 56 => 'Adipose',
(int) 57 => 'Adrenal',
(int) 58 => 'Bladder',
(int) 59 => 'Brain',
(int) 60 => 'Breast',
(int) 61 => 'Colon',
(int) 62 => 'Heart',
(int) 63 => 'Kidney',
(int) 64 => 'Liver',
(int) 65 => 'Lung',
(int) 66 => 'Muscle',
(int) 67 => 'Ovary',
(int) 68 => 'Placenta',
(int) 69 => 'Testis',
(int) 70 => 'Brain',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Adipose',
(int) 75 => 'Adrenal',
(int) 76 => 'Bladder',
(int) 77 => 'Brain',
(int) 78 => 'Breast',
(int) 79 => 'Colon',
(int) 80 => 'Heart',
(int) 81 => 'Kidney',
(int) 82 => 'Liver',
(int) 83 => 'Lung',
(int) 84 => 'Muscle',
(int) 85 => 'Ovary',
(int) 86 => 'Placenta',
(int) 87 => 'Testis',
(int) 88 => 'Adrenal',
(int) 89 => 'Breast',
(int) 90 => 'Colon',
(int) 91 => 'Kidney',
(int) 92 => 'Liver',
(int) 93 => 'Lung',
(int) 94 => 'Ovary',
(int) 95 => 'Adrenal',
(int) 96 => 'Brain',
(int) 97 => 'Breast',
(int) 98 => 'Heart',
(int) 99 => 'Ovary',
(int) 100 => 'Testis',
(int) 101 => 'Ovary',
(int) 102 => 'Placenta',
(int) 103 => 'Testis',
(int) 104 => 'Brain',
(int) 105 => 'Liver',
(int) 106 => 'Bladder',
(int) 107 => 'Heart',
(int) 108 => 'Liver',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Breast',
(int) 113 => 'Ovary',
(int) 114 => 'Placenta'
)
)
)
$gene_desc_arr = array(
'ENSG00000013563' => 'deoxyribonuclease I-like 1',
'ENSG00000102125' => 'tafazzin',
'ENSG00000147403' => 'ribosomal protein L10',
'ENSMUSG00000009995' => 'tafazzin',
'ENSMUSG00000019088' => 'deoxyribonuclease 1-like 1',
'ENSMUSG00000084271' => 'predicted gene 14846',
'ENSMUSG00000099226' => 'microRNA 7091'
)
$gene_name_arr = array(
'ENSG00000013563' => 'DNASE1L1',
'ENSG00000102125' => 'TAZ',
'ENSG00000147403' => 'RPL10',
'ENSMUSG00000009995' => 'Taz',
'ENSMUSG00000019088' => 'Dnase1l1',
'ENSMUSG00000084271' => 'Gm14846',
'ENSMUSG00000099226' => 'Mir7091'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001LA_0001',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '154401238',
'seq_end' => '154421726',
'region_length' => '20488',
'region_type' => 'CGP',
'el_id' => 'ENSG00000013563-ENSG00000102125'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001LA_0002',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '74273217',
'seq_end' => '74290151',
'region_length' => '16934',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000019088-ENSMUSG00000009995'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 19 => 'Bladder',
(int) 27 => 'Brain',
(int) 39 => 'Breast',
(int) 52 => 'Colon',
(int) 63 => 'Heart',
(int) 74 => 'Kidney',
(int) 84 => 'Liver',
(int) 96 => 'Lung',
(int) 105 => 'Muscle',
(int) 115 => 'Ovary',
(int) 133 => 'Placenta',
(int) 147 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 85
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000014935' => array(
'start' => '154401758',
'end' => '154410039',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-001'
),
'ENST00000309585' => array(
'start' => '154401761',
'end' => '154412112',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-004'
),
'ENST00000369807' => array(
'start' => '154401758',
'end' => '154409276',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-006'
),
'ENST00000369808' => array(
'start' => '154401758',
'end' => '154409278',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-002'
),
'ENST00000369809' => array(
'start' => '154401238',
'end' => '154412090',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-201'
),
'ENST00000393638' => array(
'start' => '154401238',
'end' => '154412090',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-202'
),
'ENST00000412184' => array(
'start' => '154403138',
'end' => '154405618',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-011'
),
'ENST00000424626' => array(
'start' => '154404828',
'end' => '154412091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-003'
),
'ENST00000432135' => array(
'start' => '154405489',
'end' => '154412089',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-005'
),
'ENST00000447892' => array(
'start' => '154402722',
'end' => '154405610',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-010'
),
'ENST00000451865' => array(
'start' => '154403092',
'end' => '154412083',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-009'
),
'ENST00000497242' => array(
'start' => '154402487',
'end' => '154403596',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DNASE1L1-007'
),
'ENST00000369776' => array(
'start' => '154411759',
'end' => '154421726',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-006'
),
'ENST00000426231' => array(
'start' => '154412161',
'end' => '154420992',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TAZ-018'
),
'ENST00000439735' => array(
'start' => '154411830',
'end' => '154420094',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-027'
),
'ENST00000470127' => array(
'start' => '154413529',
'end' => '154420141',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TAZ-022'
),
'ENST00000475699' => array(
'start' => '154411541',
'end' => '154421726',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-003'
),
'ENST00000476679' => array(
'start' => '154412715',
'end' => '154419952',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-019'
),
'ENST00000476800' => array(
'start' => '154413091',
'end' => '154414141',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-020'
),
'ENST00000479875' => array(
'start' => '154412721',
'end' => '154413567',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TAZ-013'
),
'ENST00000483674' => array(
'start' => '154413489',
'end' => '154419730',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-007'
),
'ENST00000483780' => array(
'start' => '154412203',
'end' => '154419786',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-021'
),
'ENST00000494912' => array(
'start' => '154418475',
'end' => '154421722',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-008'
),
'ENST00000498029' => array(
'start' => '154419991',
'end' => '154421324',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-024'
),
'ENST00000601016' => array(
'start' => '154411556',
'end' => '154421726',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-001'
),
'ENST00000612012' => array(
'start' => '154411556',
'end' => '154420073',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-012'
),
'ENST00000612460' => array(
'start' => '154411556',
'end' => '154421720',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-002'
),
'ENST00000613002' => array(
'start' => '154411541',
'end' => '154421439',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-004'
),
'ENST00000613634' => array(
'start' => '154411524',
'end' => '154420042',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-014'
),
'ENST00000614595' => array(
'start' => '154411625',
'end' => '154412683',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-017'
),
'ENST00000615658' => array(
'start' => '154411518',
'end' => '154420081',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-010'
),
'ENST00000615986' => array(
'start' => '154411561',
'end' => '154421726',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TAZ-005'
),
'ENST00000616020' => array(
'start' => '154411541',
'end' => '154414188',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-011'
),
'ENST00000617701' => array(
'start' => '154411562',
'end' => '154413567',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TAZ-015'
),
'ENST00000620808' => array(
'start' => '154411574',
'end' => '154420077',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TAZ-016'
),
'ENST00000621647' => array(
'start' => '154411559',
'end' => '154413669',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-009'
),
'ENST00000344746' => array(
'start' => '154398372',
'end' => '154402339',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-001'
),
'ENST00000369817' => array(
'start' => '154397154',
'end' => '154400917',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-008'
),
'ENST00000406022' => array(
'start' => '154398890',
'end' => '154400909',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-011'
),
'ENST00000424325' => array(
'start' => '154398230',
'end' => '154402339',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-201'
),
'ENST00000427682' => array(
'start' => '154399883',
'end' => '154403497',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-018'
),
'ENST00000428169' => array(
'start' => '154399883',
'end' => '154409168',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-020'
),
'ENST00000436473' => array(
'start' => '154398367',
'end' => '154400811',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-015'
),
'ENST00000449494' => array(
'start' => '154399883',
'end' => '154403490',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-019'
),
'ENST00000451365' => array(
'start' => '154399366',
'end' => '154403697',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-017'
),
'ENST00000458500' => array(
'start' => '154398378',
'end' => '154400917',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-009'
),
'ENST00000467168' => array(
'start' => '154398497',
'end' => '154400913',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-012'
),
'ENST00000474786' => array(
'start' => '154389955',
'end' => '154400166',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-004'
),
'ENST00000479366' => array(
'start' => '154397749',
'end' => '154398619',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'RPL10-016'
),
'ENST00000482732' => array(
'start' => '154398388',
'end' => '154400913',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-003'
),
'ENST00000485196' => array(
'start' => '154398379',
'end' => '154400817',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-010'
),
'ENST00000489200' => array(
'start' => '154398377',
'end' => '154400898',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-006'
),
'ENST00000491035' => array(
'start' => '154398377',
'end' => '154400913',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-005'
),
'ENST00000492572' => array(
'start' => '154398496',
'end' => '154400897',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-013'
),
'ENST00000618723' => array(
'start' => '154398230',
'end' => '154402339',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-202'
),
'ENSMUST00000069722' => array(
'start' => '74282697',
'end' => '74290151',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-001'
),
'ENSMUST00000114180' => array(
'start' => '74282762',
'end' => '74290148',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-015'
),
'ENSMUST00000114182' => array(
'start' => '74283082',
'end' => '74289485',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-021'
),
'ENSMUST00000124200' => array(
'start' => '74282750',
'end' => '74290148',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-002'
),
'ENSMUST00000124915' => array(
'start' => '74288020',
'end' => '74289734',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Taz-008'
),
'ENSMUST00000125972' => array(
'start' => '74282921',
'end' => '74288844',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-017'
),
'ENSMUST00000131116' => array(
'start' => '74288072',
'end' => '74289888',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-007'
),
'ENSMUST00000132437' => array(
'start' => '74282772',
'end' => '74289158',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-014'
),
'ENSMUST00000134432' => array(
'start' => '74288662',
'end' => '74289731',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Taz-009'
),
'ENSMUST00000134914' => array(
'start' => '74282789',
'end' => '74284314',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-016'
),
'ENSMUST00000134936' => array(
'start' => '74282760',
'end' => '74288704',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-006'
),
'ENSMUST00000135012' => array(
'start' => '74281912',
'end' => '74282915',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Taz-011'
),
'ENSMUST00000135504' => array(
'start' => '74283008',
'end' => '74289400',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-020'
),
'ENSMUST00000146260' => array(
'start' => '74281912',
'end' => '74282865',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Taz-012'
),
'ENSMUST00000147844' => array(
'start' => '74282766',
'end' => '74283969',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-005'
),
'ENSMUST00000149055' => array(
'start' => '74282750',
'end' => '74285887',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-010'
),
'ENSMUST00000153459' => array(
'start' => '74287665',
'end' => '74288609',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-018'
),
'ENSMUST00000156072' => array(
'start' => '74282760',
'end' => '74288279',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-013'
),
'ENSMUST00000156212' => array(
'start' => '74282750',
'end' => '74290148',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-003'
),
'ENSMUST00000156788' => array(
'start' => '74288673',
'end' => '74289681',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-019'
),
'ENSMUST00000156880' => array(
'start' => '74282750',
'end' => '74288035',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-004'
),
'ENSMUST00000176453' => array(
'start' => '74283937',
'end' => '74289348',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-022'
),
'ENSMUST00000019232' => array(
'start' => '74273217',
'end' => '74281736',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnase1l1-001'
),
'ENSMUST00000075821' => array(
'start' => '74273218',
'end' => '74282337',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnase1l1-002'
),
'ENSMUST00000114189' => array(
'start' => '74273319',
'end' => '74281598',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnase1l1-008'
),
'ENSMUST00000119361' => array(
'start' => '74273973',
'end' => '74281675',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnase1l1-006'
),
'ENSMUST00000128763' => array(
'start' => '74274368',
'end' => '74276846',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dnase1l1-009'
),
'ENSMUST00000148882' => array(
'start' => '74276785',
'end' => '74281626',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dnase1l1-007'
),
'ENSMUST00000121868' => array(
'start' => '74278654',
'end' => '74278869',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14846-001'
),
'ENSMUST00000184075' => array(
'start' => '74274027',
'end' => '74274105',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir7091-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0001LA_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000009995' => array(
[maximum depth reached]
),
'ENSMUSG00000019088' => array(
[maximum depth reached]
),
'ENSMUSG00000084271' => array(
[maximum depth reached]
),
'ENSMUSG00000099226' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Breast',
(int) 16 => 'Muscle',
(int) 17 => 'Placenta',
(int) 18 => 'Adipose',
(int) 19 => 'Bladder',
(int) 20 => 'Brain',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Heart',
(int) 24 => 'Kidney',
(int) 25 => 'Liver',
(int) 26 => 'Lung',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Testis',
(int) 32 => 'Adrenal',
(int) 33 => 'Colon',
(int) 34 => 'Liver',
(int) 35 => 'Ovary',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Ovary',
(int) 39 => 'Placenta',
(int) 40 => 'Testis',
(int) 41 => 'Adrenal',
(int) 42 => 'Breast',
(int) 43 => 'Colon',
(int) 44 => 'Ovary',
(int) 45 => 'Testis',
(int) 46 => 'Brain',
(int) 47 => 'Adipose',
(int) 48 => 'Adrenal',
(int) 49 => 'Breast',
(int) 50 => 'Colon',
(int) 51 => 'Heart',
(int) 52 => 'Kidney',
(int) 53 => 'Liver',
(int) 54 => 'Lung',
(int) 55 => 'Ovary',
(int) 56 => 'Adipose',
(int) 57 => 'Adrenal',
(int) 58 => 'Bladder',
(int) 59 => 'Brain',
(int) 60 => 'Breast',
(int) 61 => 'Colon',
(int) 62 => 'Heart',
(int) 63 => 'Kidney',
(int) 64 => 'Liver',
(int) 65 => 'Lung',
(int) 66 => 'Muscle',
(int) 67 => 'Ovary',
(int) 68 => 'Placenta',
(int) 69 => 'Testis',
(int) 70 => 'Brain',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Adipose',
(int) 75 => 'Adrenal',
(int) 76 => 'Bladder',
(int) 77 => 'Brain',
(int) 78 => 'Breast',
(int) 79 => 'Colon',
(int) 80 => 'Heart',
(int) 81 => 'Kidney',
(int) 82 => 'Liver',
(int) 83 => 'Lung',
(int) 84 => 'Muscle',
(int) 85 => 'Ovary',
(int) 86 => 'Placenta',
(int) 87 => 'Testis',
(int) 88 => 'Adrenal',
(int) 89 => 'Breast',
(int) 90 => 'Colon',
(int) 91 => 'Kidney',
(int) 92 => 'Liver',
(int) 93 => 'Lung',
(int) 94 => 'Ovary',
(int) 95 => 'Adrenal',
(int) 96 => 'Brain',
(int) 97 => 'Breast',
(int) 98 => 'Heart',
(int) 99 => 'Ovary',
(int) 100 => 'Testis',
(int) 101 => 'Ovary',
(int) 102 => 'Placenta',
(int) 103 => 'Testis',
(int) 104 => 'Brain',
(int) 105 => 'Liver',
(int) 106 => 'Bladder',
(int) 107 => 'Heart',
(int) 108 => 'Liver',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Breast',
(int) 113 => 'Ovary',
(int) 114 => 'Placenta'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0001LA_0001',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '154401238',
'seq_end' => '154421726',
'region_length' => '20488',
'region_type' => 'CGP',
'el_id' => 'ENSG00000013563-ENSG00000102125'
)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0001LA_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000013563' => 'deoxyribonuclease I-like 1',
'ENSG00000102125' => 'tafazzin',
'ENSG00000147403' => 'ribosomal protein L10',
'ENSMUSG00000009995' => 'tafazzin',
'ENSMUSG00000019088' => 'deoxyribonuclease 1-like 1',
'ENSMUSG00000084271' => 'predicted gene 14846',
'ENSMUSG00000099226' => 'microRNA 7091'
),
'gene_name_arr' => array(
'ENSG00000013563' => 'DNASE1L1',
'ENSG00000102125' => 'TAZ',
'ENSG00000147403' => 'RPL10',
'ENSMUSG00000009995' => 'Taz',
'ENSMUSG00000019088' => 'Dnase1l1',
'ENSMUSG00000084271' => 'Gm14846',
'ENSMUSG00000099226' => 'Mir7091'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 19 => 'Bladder',
(int) 27 => 'Brain',
(int) 39 => 'Breast',
(int) 52 => 'Colon',
(int) 63 => 'Heart',
(int) 74 => 'Kidney',
(int) 84 => 'Liver',
(int) 96 => 'Lung',
(int) 105 => 'Muscle',
(int) 115 => 'Ovary',
(int) 133 => 'Placenta',
(int) 147 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 85,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000014935' => array(
'start' => '154401758',
'end' => '154410039',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-001'
),
'ENST00000309585' => array(
'start' => '154401761',
'end' => '154412112',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-004'
),
'ENST00000369807' => array(
'start' => '154401758',
'end' => '154409276',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-006'
),
'ENST00000369808' => array(
'start' => '154401758',
'end' => '154409278',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-002'
),
'ENST00000369809' => array(
'start' => '154401238',
'end' => '154412090',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-201'
),
'ENST00000393638' => array(
'start' => '154401238',
'end' => '154412090',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-202'
),
'ENST00000412184' => array(
'start' => '154403138',
'end' => '154405618',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-011'
),
'ENST00000424626' => array(
'start' => '154404828',
'end' => '154412091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-003'
),
'ENST00000432135' => array(
'start' => '154405489',
'end' => '154412089',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-005'
),
'ENST00000447892' => array(
'start' => '154402722',
'end' => '154405610',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-010'
),
'ENST00000451865' => array(
'start' => '154403092',
'end' => '154412083',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-009'
),
'ENST00000497242' => array(
'start' => '154402487',
'end' => '154403596',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DNASE1L1-007'
),
'ENST00000369776' => array(
'start' => '154411759',
'end' => '154421726',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-006'
),
'ENST00000426231' => array(
'start' => '154412161',
'end' => '154420992',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TAZ-018'
),
'ENST00000439735' => array(
'start' => '154411830',
'end' => '154420094',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-027'
),
'ENST00000470127' => array(
'start' => '154413529',
'end' => '154420141',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TAZ-022'
),
'ENST00000475699' => array(
'start' => '154411541',
'end' => '154421726',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-003'
),
'ENST00000476679' => array(
'start' => '154412715',
'end' => '154419952',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-019'
),
'ENST00000476800' => array(
'start' => '154413091',
'end' => '154414141',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-020'
),
'ENST00000479875' => array(
'start' => '154412721',
'end' => '154413567',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TAZ-013'
),
'ENST00000483674' => array(
'start' => '154413489',
'end' => '154419730',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-007'
),
'ENST00000483780' => array(
'start' => '154412203',
'end' => '154419786',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-021'
),
'ENST00000494912' => array(
'start' => '154418475',
'end' => '154421722',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-008'
),
'ENST00000498029' => array(
'start' => '154419991',
'end' => '154421324',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-024'
),
'ENST00000601016' => array(
'start' => '154411556',
'end' => '154421726',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-001'
),
'ENST00000612012' => array(
'start' => '154411556',
'end' => '154420073',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-012'
),
'ENST00000612460' => array(
'start' => '154411556',
'end' => '154421720',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-002'
),
'ENST00000613002' => array(
'start' => '154411541',
'end' => '154421439',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-004'
),
'ENST00000613634' => array(
'start' => '154411524',
'end' => '154420042',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-014'
),
'ENST00000614595' => array(
'start' => '154411625',
'end' => '154412683',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-017'
),
'ENST00000615658' => array(
'start' => '154411518',
'end' => '154420081',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-010'
),
'ENST00000615986' => array(
'start' => '154411561',
'end' => '154421726',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TAZ-005'
),
'ENST00000616020' => array(
'start' => '154411541',
'end' => '154414188',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-011'
),
'ENST00000617701' => array(
'start' => '154411562',
'end' => '154413567',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TAZ-015'
),
'ENST00000620808' => array(
'start' => '154411574',
'end' => '154420077',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TAZ-016'
),
'ENST00000621647' => array(
'start' => '154411559',
'end' => '154413669',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-009'
),
'ENST00000344746' => array(
'start' => '154398372',
'end' => '154402339',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-001'
),
'ENST00000369817' => array(
'start' => '154397154',
'end' => '154400917',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-008'
),
'ENST00000406022' => array(
'start' => '154398890',
'end' => '154400909',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-011'
),
'ENST00000424325' => array(
'start' => '154398230',
'end' => '154402339',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-201'
),
'ENST00000427682' => array(
'start' => '154399883',
'end' => '154403497',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-018'
),
'ENST00000428169' => array(
'start' => '154399883',
'end' => '154409168',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-020'
),
'ENST00000436473' => array(
'start' => '154398367',
'end' => '154400811',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-015'
),
'ENST00000449494' => array(
'start' => '154399883',
'end' => '154403490',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-019'
),
'ENST00000451365' => array(
'start' => '154399366',
'end' => '154403697',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-017'
),
'ENST00000458500' => array(
'start' => '154398378',
'end' => '154400917',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-009'
),
'ENST00000467168' => array(
'start' => '154398497',
'end' => '154400913',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-012'
),
'ENST00000474786' => array(
'start' => '154389955',
'end' => '154400166',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-004'
),
'ENST00000479366' => array(
'start' => '154397749',
'end' => '154398619',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'RPL10-016'
),
'ENST00000482732' => array(
'start' => '154398388',
'end' => '154400913',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-003'
),
'ENST00000485196' => array(
'start' => '154398379',
'end' => '154400817',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-010'
),
'ENST00000489200' => array(
'start' => '154398377',
'end' => '154400898',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-006'
),
'ENST00000491035' => array(
'start' => '154398377',
'end' => '154400913',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-005'
),
'ENST00000492572' => array(
'start' => '154398496',
'end' => '154400897',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-013'
),
'ENST00000618723' => array(
'start' => '154398230',
'end' => '154402339',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-202'
),
'ENSMUST00000069722' => array(
'start' => '74282697',
'end' => '74290151',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-001'
),
'ENSMUST00000114180' => array(
'start' => '74282762',
'end' => '74290148',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-015'
),
'ENSMUST00000114182' => array(
'start' => '74283082',
'end' => '74289485',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-021'
),
'ENSMUST00000124200' => array(
'start' => '74282750',
'end' => '74290148',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-002'
),
'ENSMUST00000124915' => array(
'start' => '74288020',
'end' => '74289734',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Taz-008'
),
'ENSMUST00000125972' => array(
'start' => '74282921',
'end' => '74288844',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-017'
),
'ENSMUST00000131116' => array(
'start' => '74288072',
'end' => '74289888',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-007'
),
'ENSMUST00000132437' => array(
'start' => '74282772',
'end' => '74289158',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-014'
),
'ENSMUST00000134432' => array(
'start' => '74288662',
'end' => '74289731',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Taz-009'
),
'ENSMUST00000134914' => array(
'start' => '74282789',
'end' => '74284314',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-016'
),
'ENSMUST00000134936' => array(
'start' => '74282760',
'end' => '74288704',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-006'
),
'ENSMUST00000135012' => array(
'start' => '74281912',
'end' => '74282915',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Taz-011'
),
'ENSMUST00000135504' => array(
'start' => '74283008',
'end' => '74289400',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-020'
),
'ENSMUST00000146260' => array(
'start' => '74281912',
'end' => '74282865',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Taz-012'
),
'ENSMUST00000147844' => array(
'start' => '74282766',
'end' => '74283969',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-005'
),
'ENSMUST00000149055' => array(
'start' => '74282750',
'end' => '74285887',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-010'
),
'ENSMUST00000153459' => array(
'start' => '74287665',
'end' => '74288609',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-018'
),
'ENSMUST00000156072' => array(
'start' => '74282760',
'end' => '74288279',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-013'
),
'ENSMUST00000156212' => array(
'start' => '74282750',
'end' => '74290148',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-003'
),
'ENSMUST00000156788' => array(
'start' => '74288673',
'end' => '74289681',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-019'
),
'ENSMUST00000156880' => array(
'start' => '74282750',
'end' => '74288035',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-004'
),
'ENSMUST00000176453' => array(
'start' => '74283937',
'end' => '74289348',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-022'
),
'ENSMUST00000019232' => array(
'start' => '74273217',
'end' => '74281736',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnase1l1-001'
),
'ENSMUST00000075821' => array(
'start' => '74273218',
'end' => '74282337',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnase1l1-002'
),
'ENSMUST00000114189' => array(
'start' => '74273319',
'end' => '74281598',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnase1l1-008'
),
'ENSMUST00000119361' => array(
'start' => '74273973',
'end' => '74281675',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnase1l1-006'
),
'ENSMUST00000128763' => array(
'start' => '74274368',
'end' => '74276846',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dnase1l1-009'
),
'ENSMUST00000148882' => array(
'start' => '74276785',
'end' => '74281626',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dnase1l1-007'
),
'ENSMUST00000121868' => array(
'start' => '74278654',
'end' => '74278869',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14846-001'
),
'ENSMUST00000184075' => array(
'start' => '74274027',
'end' => '74274105',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir7091-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0001LA_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0001LA_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000009995' => array(
[maximum depth reached]
),
'ENSMUSG00000019088' => array(
[maximum depth reached]
),
'ENSMUSG00000084271' => array(
[maximum depth reached]
),
'ENSMUSG00000099226' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Breast',
(int) 16 => 'Muscle',
(int) 17 => 'Placenta',
(int) 18 => 'Adipose',
(int) 19 => 'Bladder',
(int) 20 => 'Brain',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Heart',
(int) 24 => 'Kidney',
(int) 25 => 'Liver',
(int) 26 => 'Lung',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Testis',
(int) 32 => 'Adrenal',
(int) 33 => 'Colon',
(int) 34 => 'Liver',
(int) 35 => 'Ovary',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Ovary',
(int) 39 => 'Placenta',
(int) 40 => 'Testis',
(int) 41 => 'Adrenal',
(int) 42 => 'Breast',
(int) 43 => 'Colon',
(int) 44 => 'Ovary',
(int) 45 => 'Testis',
(int) 46 => 'Brain',
(int) 47 => 'Adipose',
(int) 48 => 'Adrenal',
(int) 49 => 'Breast',
(int) 50 => 'Colon',
(int) 51 => 'Heart',
(int) 52 => 'Kidney',
(int) 53 => 'Liver',
(int) 54 => 'Lung',
(int) 55 => 'Ovary',
(int) 56 => 'Adipose',
(int) 57 => 'Adrenal',
(int) 58 => 'Bladder',
(int) 59 => 'Brain',
(int) 60 => 'Breast',
(int) 61 => 'Colon',
(int) 62 => 'Heart',
(int) 63 => 'Kidney',
(int) 64 => 'Liver',
(int) 65 => 'Lung',
(int) 66 => 'Muscle',
(int) 67 => 'Ovary',
(int) 68 => 'Placenta',
(int) 69 => 'Testis',
(int) 70 => 'Brain',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Adipose',
(int) 75 => 'Adrenal',
(int) 76 => 'Bladder',
(int) 77 => 'Brain',
(int) 78 => 'Breast',
(int) 79 => 'Colon',
(int) 80 => 'Heart',
(int) 81 => 'Kidney',
(int) 82 => 'Liver',
(int) 83 => 'Lung',
(int) 84 => 'Muscle',
(int) 85 => 'Ovary',
(int) 86 => 'Placenta',
(int) 87 => 'Testis',
(int) 88 => 'Adrenal',
(int) 89 => 'Breast',
(int) 90 => 'Colon',
(int) 91 => 'Kidney',
(int) 92 => 'Liver',
(int) 93 => 'Lung',
(int) 94 => 'Ovary',
(int) 95 => 'Adrenal',
(int) 96 => 'Brain',
(int) 97 => 'Breast',
(int) 98 => 'Heart',
(int) 99 => 'Ovary',
(int) 100 => 'Testis',
(int) 101 => 'Ovary',
(int) 102 => 'Placenta',
(int) 103 => 'Testis',
(int) 104 => 'Brain',
(int) 105 => 'Liver',
(int) 106 => 'Bladder',
(int) 107 => 'Heart',
(int) 108 => 'Liver',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Breast',
(int) 113 => 'Ovary',
(int) 114 => 'Placenta'
)
)
)
$gene_desc_arr = array(
'ENSG00000013563' => 'deoxyribonuclease I-like 1',
'ENSG00000102125' => 'tafazzin',
'ENSG00000147403' => 'ribosomal protein L10',
'ENSMUSG00000009995' => 'tafazzin',
'ENSMUSG00000019088' => 'deoxyribonuclease 1-like 1',
'ENSMUSG00000084271' => 'predicted gene 14846',
'ENSMUSG00000099226' => 'microRNA 7091'
)
$gene_name_arr = array(
'ENSG00000013563' => 'DNASE1L1',
'ENSG00000102125' => 'TAZ',
'ENSG00000147403' => 'RPL10',
'ENSMUSG00000009995' => 'Taz',
'ENSMUSG00000019088' => 'Dnase1l1',
'ENSMUSG00000084271' => 'Gm14846',
'ENSMUSG00000099226' => 'Mir7091'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001LA_0001',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '154401238',
'seq_end' => '154421726',
'region_length' => '20488',
'region_type' => 'CGP',
'el_id' => 'ENSG00000013563-ENSG00000102125'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0001LA_0002',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '74273217',
'seq_end' => '74290151',
'region_length' => '16934',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000019088-ENSMUSG00000009995'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 9 => 'Adrenal',
(int) 19 => 'Bladder',
(int) 27 => 'Brain',
(int) 39 => 'Breast',
(int) 52 => 'Colon',
(int) 63 => 'Heart',
(int) 74 => 'Kidney',
(int) 84 => 'Liver',
(int) 96 => 'Lung',
(int) 105 => 'Muscle',
(int) 115 => 'Ovary',
(int) 133 => 'Placenta',
(int) 147 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 85
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000014935' => array(
'start' => '154401758',
'end' => '154410039',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-001'
),
'ENST00000309585' => array(
'start' => '154401761',
'end' => '154412112',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-004'
),
'ENST00000369807' => array(
'start' => '154401758',
'end' => '154409276',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-006'
),
'ENST00000369808' => array(
'start' => '154401758',
'end' => '154409278',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-002'
),
'ENST00000369809' => array(
'start' => '154401238',
'end' => '154412090',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-201'
),
'ENST00000393638' => array(
'start' => '154401238',
'end' => '154412090',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-202'
),
'ENST00000412184' => array(
'start' => '154403138',
'end' => '154405618',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-011'
),
'ENST00000424626' => array(
'start' => '154404828',
'end' => '154412091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-003'
),
'ENST00000432135' => array(
'start' => '154405489',
'end' => '154412089',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-005'
),
'ENST00000447892' => array(
'start' => '154402722',
'end' => '154405610',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-010'
),
'ENST00000451865' => array(
'start' => '154403092',
'end' => '154412083',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNASE1L1-009'
),
'ENST00000497242' => array(
'start' => '154402487',
'end' => '154403596',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DNASE1L1-007'
),
'ENST00000369776' => array(
'start' => '154411759',
'end' => '154421726',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-006'
),
'ENST00000426231' => array(
'start' => '154412161',
'end' => '154420992',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TAZ-018'
),
'ENST00000439735' => array(
'start' => '154411830',
'end' => '154420094',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-027'
),
'ENST00000470127' => array(
'start' => '154413529',
'end' => '154420141',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TAZ-022'
),
'ENST00000475699' => array(
'start' => '154411541',
'end' => '154421726',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-003'
),
'ENST00000476679' => array(
'start' => '154412715',
'end' => '154419952',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-019'
),
'ENST00000476800' => array(
'start' => '154413091',
'end' => '154414141',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-020'
),
'ENST00000479875' => array(
'start' => '154412721',
'end' => '154413567',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TAZ-013'
),
'ENST00000483674' => array(
'start' => '154413489',
'end' => '154419730',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-007'
),
'ENST00000483780' => array(
'start' => '154412203',
'end' => '154419786',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-021'
),
'ENST00000494912' => array(
'start' => '154418475',
'end' => '154421722',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-008'
),
'ENST00000498029' => array(
'start' => '154419991',
'end' => '154421324',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-024'
),
'ENST00000601016' => array(
'start' => '154411556',
'end' => '154421726',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-001'
),
'ENST00000612012' => array(
'start' => '154411556',
'end' => '154420073',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-012'
),
'ENST00000612460' => array(
'start' => '154411556',
'end' => '154421720',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-002'
),
'ENST00000613002' => array(
'start' => '154411541',
'end' => '154421439',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-004'
),
'ENST00000613634' => array(
'start' => '154411524',
'end' => '154420042',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-014'
),
'ENST00000614595' => array(
'start' => '154411625',
'end' => '154412683',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-017'
),
'ENST00000615658' => array(
'start' => '154411518',
'end' => '154420081',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-010'
),
'ENST00000615986' => array(
'start' => '154411561',
'end' => '154421726',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TAZ-005'
),
'ENST00000616020' => array(
'start' => '154411541',
'end' => '154414188',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TAZ-011'
),
'ENST00000617701' => array(
'start' => '154411562',
'end' => '154413567',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TAZ-015'
),
'ENST00000620808' => array(
'start' => '154411574',
'end' => '154420077',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TAZ-016'
),
'ENST00000621647' => array(
'start' => '154411559',
'end' => '154413669',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TAZ-009'
),
'ENST00000344746' => array(
'start' => '154398372',
'end' => '154402339',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-001'
),
'ENST00000369817' => array(
'start' => '154397154',
'end' => '154400917',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-008'
),
'ENST00000406022' => array(
'start' => '154398890',
'end' => '154400909',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-011'
),
'ENST00000424325' => array(
'start' => '154398230',
'end' => '154402339',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-201'
),
'ENST00000427682' => array(
'start' => '154399883',
'end' => '154403497',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-018'
),
'ENST00000428169' => array(
'start' => '154399883',
'end' => '154409168',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-020'
),
'ENST00000436473' => array(
'start' => '154398367',
'end' => '154400811',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-015'
),
'ENST00000449494' => array(
'start' => '154399883',
'end' => '154403490',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-019'
),
'ENST00000451365' => array(
'start' => '154399366',
'end' => '154403697',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-017'
),
'ENST00000458500' => array(
'start' => '154398378',
'end' => '154400917',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-009'
),
'ENST00000467168' => array(
'start' => '154398497',
'end' => '154400913',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-012'
),
'ENST00000474786' => array(
'start' => '154389955',
'end' => '154400166',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-004'
),
'ENST00000479366' => array(
'start' => '154397749',
'end' => '154398619',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'RPL10-016'
),
'ENST00000482732' => array(
'start' => '154398388',
'end' => '154400913',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-003'
),
'ENST00000485196' => array(
'start' => '154398379',
'end' => '154400817',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-010'
),
'ENST00000489200' => array(
'start' => '154398377',
'end' => '154400898',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-006'
),
'ENST00000491035' => array(
'start' => '154398377',
'end' => '154400913',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-005'
),
'ENST00000492572' => array(
'start' => '154398496',
'end' => '154400897',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RPL10-013'
),
'ENST00000618723' => array(
'start' => '154398230',
'end' => '154402339',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'RPL10-202'
),
'ENSMUST00000069722' => array(
'start' => '74282697',
'end' => '74290151',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-001'
),
'ENSMUST00000114180' => array(
'start' => '74282762',
'end' => '74290148',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-015'
),
'ENSMUST00000114182' => array(
'start' => '74283082',
'end' => '74289485',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-021'
),
'ENSMUST00000124200' => array(
'start' => '74282750',
'end' => '74290148',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-002'
),
'ENSMUST00000124915' => array(
'start' => '74288020',
'end' => '74289734',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Taz-008'
),
'ENSMUST00000125972' => array(
'start' => '74282921',
'end' => '74288844',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-017'
),
'ENSMUST00000131116' => array(
'start' => '74288072',
'end' => '74289888',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-007'
),
'ENSMUST00000132437' => array(
'start' => '74282772',
'end' => '74289158',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-014'
),
'ENSMUST00000134432' => array(
'start' => '74288662',
'end' => '74289731',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Taz-009'
),
'ENSMUST00000134914' => array(
'start' => '74282789',
'end' => '74284314',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-016'
),
'ENSMUST00000134936' => array(
'start' => '74282760',
'end' => '74288704',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-006'
),
'ENSMUST00000135012' => array(
'start' => '74281912',
'end' => '74282915',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Taz-011'
),
'ENSMUST00000135504' => array(
'start' => '74283008',
'end' => '74289400',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-020'
),
'ENSMUST00000146260' => array(
'start' => '74281912',
'end' => '74282865',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Taz-012'
),
'ENSMUST00000147844' => array(
'start' => '74282766',
'end' => '74283969',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-005'
),
'ENSMUST00000149055' => array(
'start' => '74282750',
'end' => '74285887',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-010'
),
'ENSMUST00000153459' => array(
'start' => '74287665',
'end' => '74288609',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-018'
),
'ENSMUST00000156072' => array(
'start' => '74282760',
'end' => '74288279',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-013'
),
'ENSMUST00000156212' => array(
'start' => '74282750',
'end' => '74290148',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-003'
),
'ENSMUST00000156788' => array(
'start' => '74288673',
'end' => '74289681',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-019'
),
'ENSMUST00000156880' => array(
'start' => '74282750',
'end' => '74288035',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Taz-004'
),
'ENSMUST00000176453' => array(
'start' => '74283937',
'end' => '74289348',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Taz-022'
),
'ENSMUST00000019232' => array(
'start' => '74273217',
'end' => '74281736',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnase1l1-001'
),
'ENSMUST00000075821' => array(
'start' => '74273218',
'end' => '74282337',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnase1l1-002'
),
'ENSMUST00000114189' => array(
'start' => '74273319',
'end' => '74281598',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnase1l1-008'
),
'ENSMUST00000119361' => array(
'start' => '74273973',
'end' => '74281675',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnase1l1-006'
),
'ENSMUST00000128763' => array(
'start' => '74274368',
'end' => '74276846',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dnase1l1-009'
),
'ENSMUST00000148882' => array(
'start' => '74276785',
'end' => '74281626',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dnase1l1-007'
),
'ENSMUST00000121868' => array(
'start' => '74278654',
'end' => '74278869',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14846-001'
),
'ENSMUST00000184075' => array(
'start' => '74274027',
'end' => '74274105',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir7091-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0001LA_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000009995' => array(
[maximum depth reached]
),
'ENSMUSG00000019088' => array(
[maximum depth reached]
),
'ENSMUSG00000084271' => array(
[maximum depth reached]
),
'ENSMUSG00000099226' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Breast',
(int) 16 => 'Muscle',
(int) 17 => 'Placenta',
(int) 18 => 'Adipose',
(int) 19 => 'Bladder',
(int) 20 => 'Brain',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Heart',
(int) 24 => 'Kidney',
(int) 25 => 'Liver',
(int) 26 => 'Lung',
(int) 27 => 'Muscle',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis',
(int) 31 => 'Testis',
(int) 32 => 'Adrenal',
(int) 33 => 'Colon',
(int) 34 => 'Liver',
(int) 35 => 'Ovary',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Ovary',
(int) 39 => 'Placenta',
(int) 40 => 'Testis',
(int) 41 => 'Adrenal',
(int) 42 => 'Breast',
(int) 43 => 'Colon',
(int) 44 => 'Ovary',
(int) 45 => 'Testis',
(int) 46 => 'Brain',
(int) 47 => 'Adipose',
(int) 48 => 'Adrenal',
(int) 49 => 'Breast',
(int) 50 => 'Colon',
(int) 51 => 'Heart',
(int) 52 => 'Kidney',
(int) 53 => 'Liver',
(int) 54 => 'Lung',
(int) 55 => 'Ovary',
(int) 56 => 'Adipose',
(int) 57 => 'Adrenal',
(int) 58 => 'Bladder',
(int) 59 => 'Brain',
(int) 60 => 'Breast',
(int) 61 => 'Colon',
(int) 62 => 'Heart',
(int) 63 => 'Kidney',
(int) 64 => 'Liver',
(int) 65 => 'Lung',
(int) 66 => 'Muscle',
(int) 67 => 'Ovary',
(int) 68 => 'Placenta',
(int) 69 => 'Testis',
(int) 70 => 'Brain',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Adipose',
(int) 75 => 'Adrenal',
(int) 76 => 'Bladder',
(int) 77 => 'Brain',
(int) 78 => 'Breast',
(int) 79 => 'Colon',
(int) 80 => 'Heart',
(int) 81 => 'Kidney',
(int) 82 => 'Liver',
(int) 83 => 'Lung',
(int) 84 => 'Muscle',
(int) 85 => 'Ovary',
(int) 86 => 'Placenta',
(int) 87 => 'Testis',
(int) 88 => 'Adrenal',
(int) 89 => 'Breast',
(int) 90 => 'Colon',
(int) 91 => 'Kidney',
(int) 92 => 'Liver',
(int) 93 => 'Lung',
(int) 94 => 'Ovary',
(int) 95 => 'Adrenal',
(int) 96 => 'Brain',
(int) 97 => 'Breast',
(int) 98 => 'Heart',
(int) 99 => 'Ovary',
(int) 100 => 'Testis',
(int) 101 => 'Ovary',
(int) 102 => 'Placenta',
(int) 103 => 'Testis',
(int) 104 => 'Brain',
(int) 105 => 'Liver',
(int) 106 => 'Bladder',
(int) 107 => 'Heart',
(int) 108 => 'Liver',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Breast',
(int) 113 => 'Ovary',
(int) 114 => 'Placenta'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0001LA_0001',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '154401238',
'seq_end' => '154421726',
'region_length' => '20488',
'region_type' => 'CGP',
'el_id' => 'ENSG00000013563-ENSG00000102125'
)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(Taz)