C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001MK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000039270-ENSDARG00000018069 CGP 7955 13:33264038-33289432
GeneTranscriptPositionBiotype
ENSDARG00000018069 (rdh12)
retinol dehydrogenase 12 (all-trans and 9-cis) 		ENSDART00000137315 (rdh12-001) 33279150-33289432 protein_coding
ENSDARG00000039270 (vti1b)
vesicle transport through interaction with t-SNAREs homolog 1B (yeast) 		ENSDART00000057379 (vti1b-001) 33264038-33278449 protein_coding
ENSDART00000135955 (vti1b-002) 33264861-33278458 protein_coding
CIL_0001MK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021124-ENSMUSG00000066441 CGP 10090 12:79156017-79192293
GeneTranscriptPositionBiotype
ENSMUSG00000021124 (Vti1b)
vesicle transport through interaction with t-SNAREs 1B 		ENSMUST00000055262 (Vti1b-001) 79156017-79172667 protein_coding
ENSMUST00000162569 (Vti1b-004) 79156329-79165139 protein_coding
ENSMUST00000162789 (Vti1b-002) 79156170-79172448 nonsense_mediated_decay
ENSMUST00000163031 (Vti1b-003) 79156517-79166368 nonsense_mediated_decay
ENSMUSG00000021125 (Arg2)
arginase type II 		ENSMUST00000021550 (Arg2-001) 79130777-79156301 protein_coding
ENSMUSG00000066441 (Rdh11)
retinol dehydrogenase 11 		ENSMUST00000085254 (Rdh11-002) 79175551-79190961 protein_coding
ENSMUST00000159500 (Rdh11-003) 79176165-79191793 nonsense_mediated_decay
ENSMUST00000161204 (Rdh11-001) 79174337-79192293 protein_coding
ENSMUSG00000091507 (Gm17194)
predicted gene 17194 		ENSMUST00000164610 (Gm17194-001) 79168486-79168833 processed_pseudogene
ENSMUSG00000091534 (Gm17195)
predicted gene 17195 		ENSMUST00000170289 (Gm17195-001) 79163408-79163835 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001MK_0001ENSDARG00000018069ENSDART00000137315ENSDARG00000039270ENSDART00000057379ENSDART00000135955CIL_0001MK_0002ENSMUSG00000021124ENSMUST00000055262ENSMUST00000162569ENSMUST00000162789ENSMUST00000163031ENSMUSG00000021125ENSMUST00000021550ENSMUSG00000066441ENSMUST00000085254ENSMUST00000159500ENSMUST00000161204ENSMUSG00000091507ENSMUST00000164610ENSMUSG00000091534ENSMUST00000170289
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001MK_0001ENSDARG00000018069ENSDART00000137315ENSDARG00000039270ENSDART00000057379CIL_0001MK_0002ENSMUSG00000021124ENSMUST00000055262ENSMUST00000162569ENSMUST00000162789ENSMUSG00000021125ENSMUST00000021550ENSMUSG00000066441ENSMUST00000085254ENSMUST00000159500ENSMUST00000161204ENSMUSG00000091507ENSMUST00000164610ENSMUSG00000091534ENSMUST00000170289
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000018069 ENSDART00000137315 N/A N/A N/A 29.462±9.58 N/A N/A 2.535±2.00 12.168±7.84 9.437±0.00 N/A 2.045±0.00 N/A N/A N/A
ENSDARG00000039270 ENSDART00000057379 N/A N/A N/A 4.196±2.06 N/A N/A 3.522±0.78 2.969±2.23 0.517±0.00 N/A 1.204±0.00 N/A N/A N/A
ENSDART00000135955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021124 ENSMUST00000055262 12.072±1.17 N/A 40.383±1.72 30.231±8.88 6.993±1.27 12.244±3.01 11.106±0.82 11.135±2.99 7.071±4.21 11.694±2.34 16.598±3.04 9.264±7.32 27.608±3.35 11.130±3.25
ENSMUST00000162569 N/A N/A N/A 128.111±0.00 14.382±0.00 N/A 6.358±0.00 N/A N/A N/A 10.273±1.00 39.781±4.15 50.478±8.08 N/A
ENSMUST00000162789 8.995±2.47 48.714±19.42 10.244±0.00 8.196±0.50 13.962±6.80 31.485±6.24 9.885±3.31 19.104±3.14 11.331±6.99 15.985±2.90 12.218±1.74 12.239±7.09 7.823±1.75 4.012±0.00
ENSMUST00000163031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000021125 ENSMUST00000021550 3.835±0.12 N/A 10.711±1.77 6.308±0.44 5.857±1.58 N/A N/A 12.056±3.01 N/A 3.492±0.43 N/A 5.165±2.01 N/A 3.478±0.00
ENSMUSG00000066441 ENSMUST00000085254 1.593±0.27 1.056±0.19 2.137±0.15 2.571±0.52 1.735±0.54 1.738±0.72 0.410±0.04 2.008±0.69 7.485±2.34 2.086±0.91 0.735±0.15 4.155±2.85 6.191±1.96 36.276±5.42
ENSMUST00000159500 2.921±0.47 3.701±1.54 N/A N/A 2.823±1.62 2.800±0.91 0.527±0.09 3.763±0.80 11.496±2.67 2.347±0.39 0.738±0.00 7.147±0.99 N/A N/A
ENSMUST00000161204 3.771±0.63 3.049±0.70 4.896±0.81 4.868±1.04 2.838±0.95 2.164±0.31 0.654±0.07 3.604±0.41 15.652±5.72 3.064±0.35 0.498±0.16 4.375±1.00 7.315±7.97 30.182±7.38
ENSMUSG00000091507 ENSMUST00000164610 0.780±0.11 1.855±0.00 1.003±0.02 0.603±0.00 2.590±1.57 0.595±0.00 0.576±0.21 0.385±0.16 0.412±0.22 0.606±0.15 0.243±0.11 1.049±0.55 0.683±0.20 0.433±0.18
ENSMUSG00000091534 ENSMUST00000170289 3.080±0.39 1.765±0.44 2.679±0.70 3.623±0.00 2.508±0.68 2.620±0.61 0.905±0.21 1.331±0.46 0.680±0.33 1.781±0.39 0.274±0.12 4.266±1.76 1.552±0.84 0.950±0.47

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