C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001QK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000155833-ENSG00000136824 CGP 9606 9:102995311-104141417
GeneTranscriptPositionBiotype
ENSG00000136824 (SMC2)
structural maintenance of chromosomes 2 		ENST00000286398 (SMC2-201) 104094260-104141409 protein_coding
ENST00000374787 (SMC2-002) 104094564-104139651 protein_coding
ENST00000374793 (SMC2-001) 104094326-104141417 protein_coding
ENST00000440179 (SMC2-004) 104094296-104102193 protein_coding
ENST00000493955 (SMC2-003) 104127407-104139652 nonsense_mediated_decay
ENSG00000155833 (CYLC2)
cylicin, basic protein of sperm head cytoskeleton 2 		ENST00000374798 (CYLC2-001) 102995311-103018488 protein_coding
ENST00000487798 (CYLC2-002) 102995344-103018488 protein_coding
ENST00000590560 (CYLC2-004) 103012059-103018488 processed_transcript
ENST00000612124 (CYLC2-201) 102995311-103006378 protein_coding
ENSG00000225564 (LINC01492)
long intergenic non-protein coding RNA 1492 		ENST00000411575 (LINC01492-001) 103140523-103325034 lincRNA
ENST00000425157 (LINC01492-003) 103207173-103253266 lincRNA
ENST00000455051 (LINC01492-002) 103276031-103324778 lincRNA
ENSG00000226566 (RP11-436F21.1)
 ENST00000421507 (RP11-436F21.1-001) 103361952-103429892 lincRNA
ENSG00000270332 (SMC2-AS1)
SMC2 antisense RNA 1 (head to head) 		ENST00000603487 (SMC2-AS1-002) 104080024-104092474 lincRNA
ENST00000603949 (SMC2-AS1-001) 104092402-104093073 lincRNA
CIL_0001QK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039555-ENSMUSG00000028312 CGP 10090 4:51216678-52488260
GeneTranscriptPositionBiotype
ENSMUSG00000019836 (Amd-ps4)
S-adenosylmethionine decarboxylase, pseudogene 4 		ENSMUST00000118392 (Amd-ps4-001) 51253025-51254027 processed_pseudogene
ENSMUSG00000028312 (Smc2)
structural maintenance of chromosomes 2 		ENSMUST00000102915 (Smc2-001) 52439243-52488260 protein_coding
ENSMUST00000117280 (Smc2-002) 52439243-52488260 protein_coding
ENSMUST00000131163 (Smc2-004) 52439252-52447776 processed_transcript
ENSMUST00000142227 (Smc2-003) 52439269-52458574 protein_coding
ENSMUST00000146787 (Smc2-005) 52439266-52451328 processed_transcript
ENSMUSG00000039555 (Cylc2)
cylicin, basic protein of sperm head cytoskeleton 2 		ENSMUST00000041392 (Cylc2-001) 51216678-51230272 protein_coding
ENSMUST00000156384 (Cylc2-002) 51216678-51228821 processed_transcript
ENSMUST00000166749 (Cylc2-201) 51216678-51229928 protein_coding
ENSMUSG00000064923 (Gm22042)
predicted gene, 22042 		ENSMUST00000082989 (Gm22042-201) 51812483-51812647 snRNA
ENSMUSG00000083539 (Gm12466)
predicted gene 12466 		ENSMUST00000121199 (Gm12466-001) 52240903-52241522 processed_pseudogene
ENSMUSG00000084380 (Tmc4-ps)
Tmc4 retrotransposed pseudogene 		ENSMUST00000117819 (Tmc4-ps-001) 52443915-52444172 processed_pseudogene
ENSMUSG00000085515 (C630028M04Rik)
RIKEN cDNA C630028M04 gene 		ENSMUST00000141452 (C630028M04Rik-001) 51968094-52051110 lincRNA
ENSMUSG00000085763 (Smc2os)
structural maintenance of chromosomes 2, opposite strand 		ENSMUST00000141473 (Smc2os-001) 52430285-52438965 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001QK_0001ENSG00000136824ENST00000286398ENST00000374787ENST00000374793ENST00000440179ENST00000493955ENSG00000155833ENST00000374798ENST00000487798ENST00000590560ENST00000612124ENSG00000225564ENST00000411575ENST00000425157ENST00000455051ENSG00000226566ENST00000421507ENSG00000270332ENST00000603487ENST00000603949CIL_0001QK_0002ENSMUSG00000019836ENSMUST00000118392ENSMUSG00000028312ENSMUST00000102915ENSMUST00000117280ENSMUST00000131163ENSMUST00000142227ENSMUST00000146787ENSMUSG00000039555ENSMUST00000041392ENSMUST00000156384ENSMUST00000166749ENSMUSG00000064923ENSMUST00000082989ENSMUSG00000083539ENSMUST00000121199ENSMUSG00000084380ENSMUST00000117819ENSMUSG00000085515ENSMUST00000141452ENSMUSG00000085763ENSMUST00000141473
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001QK_0001ENSG00000136824ENST00000286398ENST00000374787ENST00000374793ENSG00000155833ENST00000374798ENST00000487798ENST00000590560ENST00000612124ENSG00000225564ENST00000411575ENST00000425157ENST00000455051ENSG00000226566ENST00000421507ENSG00000270332ENST00000603487ENST00000603949CIL_0001QK_0002ENSMUSG00000019836ENSMUST00000118392ENSMUSG00000028312ENSMUST00000102915ENSMUST00000117280ENSMUST00000131163ENSMUST00000142227ENSMUSG00000039555ENSMUST00000041392ENSMUST00000156384ENSMUST00000166749ENSMUSG00000064923ENSMUST00000082989ENSMUSG00000083539ENSMUST00000121199ENSMUSG00000084380ENSMUST00000117819ENSMUSG00000085515ENSMUST00000141452ENSMUSG00000085763ENSMUST00000141473
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136824 ENST00000286398 N/A N/A N/A 0.582±0.00 0.554±0.00 1.806±0.00 N/A N/A N/A N/A N/A 0.359±0.00 N/A N/A
ENST00000374787 0.496±0.00 0.292±0.00 0.654±0.00 0.735±0.20 1.948±0.00 0.549±0.00 0.808±0.05 0.708±0.00 0.259±0.00 0.626±0.00 0.139±0.00 6.919±0.00 4.730±0.00 4.757±3.70
ENST00000374793 1.386±0.00 1.334±0.00 0.321±0.00 1.090±0.34 0.886±0.55 1.324±0.00 1.406±0.00 1.420±0.39 0.464±0.00 0.473±0.15 0.590±0.00 1.921±0.53 1.162±0.37 3.037±0.04
ENST00000440179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000155833 ENST00000374798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.338±0.00
ENST00000487798 N/A N/A N/A N/A 0.059±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590560 N/A 0.441±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612124 0.005±0.00 N/A N/A 0.005±0.00 0.005±0.00 N/A 0.011±0.01 0.026±0.00 N/A 0.010±0.00 N/A N/A N/A 52.138±0.00
ENSG00000225564 ENST00000411575 0.017±0.00 0.057±0.00 0.014±0.00 0.012±0.00 0.027±0.01 0.039±0.04 0.011±0.00 0.007±0.00 0.009±0.00 0.045±0.00 N/A 0.033±0.03 0.016±0.01 N/A
ENST00000425157 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.467±0.00
ENST00000455051 0.121±0.00 0.165±0.00 N/A N/A 0.148±0.00 0.020±0.00 N/A 0.066±0.00 N/A N/A 0.190±0.00 N/A N/A N/A
ENSG00000226566 ENST00000421507 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.659±0.00 N/A N/A N/A 0.059±0.00
ENSG00000270332 ENST00000603487 0.039±0.00 0.065±0.00 N/A 0.065±0.00 0.054±0.00 0.050±0.02 0.149±0.11 0.035±0.00 0.223±0.21 0.072±0.00 0.012±0.00 0.025±0.01 0.013±0.00 0.122±0.03
ENST00000603949 N/A N/A N/A 0.093±0.00 N/A N/A N/A 0.434±0.17 0.029±0.00 N/A N/A 0.144±0.09 N/A 0.379±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000019836 ENSMUST00000118392 N/A N/A 0.008±0.00 0.306±0.00 N/A N/A 0.062±0.00 N/A 0.244±0.46 N/A 0.185±0.06 N/A 0.016±0.01 N/A
ENSMUSG00000028312 ENSMUST00000102915 0.123±0.03 2.617±1.07 0.172±0.00 1.684±0.49 0.520±0.27 1.208±0.20 0.155±0.08 0.329±0.13 4.077±4.77 0.416±0.25 N/A 1.155±0.67 2.673±1.44 1.288±0.32
ENSMUST00000117280 0.581±0.04 0.513±0.00 0.376±0.16 1.458±1.01 0.432±0.33 N/A 0.077±0.00 0.069±0.00 4.686±1.89 0.539±0.21 0.137±0.07 2.766±0.82 6.454±6.21 N/A
ENSMUST00000131163 1.567±0.97 0.929±0.00 N/A N/A 0.954±0.05 1.116±0.24 0.234±0.00 0.743±0.00 N/A 0.898±0.00 N/A N/A N/A 5.941±0.00
ENSMUST00000142227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.094±0.00 0.980±0.00 N/A N/A
ENSMUST00000146787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039555 ENSMUST00000041392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.011±0.00 N/A N/A
ENSMUST00000156384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.808±1.98
ENSMUST00000166749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 246.530±243.73
ENSMUSG00000064923 ENSMUST00000082989 N/A N/A N/A 0.976±0.00 N/A N/A N/A N/A 3.002±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000083539 ENSMUST00000121199 N/A N/A N/A N/A N/A N/A N/A N/A 0.019±0.00 N/A N/A 0.191±0.08 0.090±0.06 N/A
ENSMUSG00000084380 ENSMUST00000117819 N/A N/A N/A 0.125±0.00 N/A N/A N/A N/A 0.195±0.00 N/A N/A N/A 0.817±0.00 0.759±0.00
ENSMUSG00000085515 ENSMUST00000141452 N/A N/A N/A 0.002±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.012±0.01 N/A
ENSMUSG00000085763 ENSMUST00000141473 0.171±0.09 N/A 0.241±0.05 0.788±0.51 0.328±0.29 N/A 0.139±0.06 0.352±0.00 0.379±0.27 0.107±0.00 0.080±0.00 0.144±0.00 0.260±0.09 1.424±0.52

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