Institute of Cardiovascular Regeneration Webtool Repository

CIL_0001ST_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSDARG00000003090-ENSDARG00000003090	CGP	7955	15:30736120-30743311
Gene	Transcript	Position	Biotype
ENSDARG00000092218 (or103-3) odorant receptor, family C, subfamily 103, member 3	ENSDART00000145537 (or103-3-001)	30736316-30737278	protein_coding

CIL_0001ST_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSDARG00000004598-ENSDARG00000074966	CGP	7955	15:30764546-30770810
Gene	Transcript	Position	Biotype
ENSDARG00000074966 (or102-3) odorant receptor, family C, subfamily 102, member 3	ENSDART00000110078 (or102-3-001)	30769824-30770810	protein_coding

CIL_0001ST_0003 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSDARG00000041003-ENSDARG00000025600	CGP	7955	15:30774365-30781012
Gene	Transcript	Position	Biotype
ENSDARG00000092217 (or102-6p) odorant receptor, family C, subfamily 102, member 6, pseudogene	ENSDART00000142212 (or102-6p-001)	30777209-30778118	unprocessed_pseudogene

CIL_0001ST_0004 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSDARG00000041005-ENSDARG00000004598	CGP	7955	15:30760223-30765529
Gene	Transcript	Position	Biotype
ENSDARG00000041005 (or102-1) odorant receptor, family C, subfamily 102, member 1	ENSDART00000060087 (or102-1-001)	30760223-30761600	protein_coding

CIL_0001ST_0005 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSDARG00000068660-ENSDARG00000068659	CGP	7955	10:37525273-37530746
Gene	Transcript	Position	Biotype
ENSDARG00000068660 (or105-1) odorant receptor, family C, subfamily 105, member 1	ENSDART00000099397 (or105-1-201)	37525273-37526385	protein_coding

CIL_0001ST_0006 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSDARG00000074966-ENSDARG00000041003	CGP	7955	15:30769824-30775589
Gene	Transcript	Position	Biotype
ENSDARG00000074966 (or102-3) odorant receptor, family C, subfamily 102, member 3	ENSDART00000110078 (or102-3-001)	30769824-30770810	protein_coding

CIL_0001ST_0007 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSDARG00000075128-ENSDARG00000075128	CGP	7955	15:30719092-30728409
Gene	Transcript	Position	Biotype
ENSDARG00000094080 (or103-1) odorant receptor, family C, subfamily 103, member 1	ENSDART00000014270 (or103-1-001)	30724320-30726367	protein_coding

CIL_0001ST_0008 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSDARG00000092218-ENSDARG00000041005	CGP	7955	15:30736316-30761600
Gene	Transcript	Position	Biotype
ENSDARG00000041005 (or102-1) odorant receptor, family C, subfamily 102, member 1	ENSDART00000060087 (or102-1-001)	30760223-30761600	protein_coding
ENSDARG00000092218 (or103-3) odorant receptor, family C, subfamily 103, member 3	ENSDART00000145537 (or103-3-001)	30736316-30737278	protein_coding

CIL_0001ST_0009 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSDARG00000094080-ENSDARG00000094125	CGP	7955	15:30724320-30735663
Gene	Transcript	Position	Biotype
ENSDARG00000094080 (or103-1) odorant receptor, family C, subfamily 103, member 1	ENSDART00000014270 (or103-1-001)	30724320-30726367	protein_coding

CIL_0001ST_000A (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSDARG00000094125-ENSDARG00000003090	CGP	7955	15:30733509-30743311
Gene	Transcript	Position	Biotype
ENSDARG00000092218 (or103-3) odorant receptor, family C, subfamily 103, member 3	ENSDART00000145537 (or103-3-001)	30736316-30737278	protein_coding

CIL_0001ST_000B (Click to Hide/Show)

Notice (8): Undefined index: CIL_0001ST_000B [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0001ST_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0009' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_000A' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_000C' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSDARG00000003090' => 'odorant receptor, family C, subfamily 103, member 4',
		'ENSDARG00000092218' => 'odorant receptor, family C, subfamily 103, member 3',
		'ENSDARG00000004598' => 'odorant receptor, family C, subfamily 102, member 2',
		'ENSDARG00000074966' => 'odorant receptor, family C, subfamily 102, member 3',
		'ENSDARG00000025600' => 'odorant receptor, family C, subfamily 102, member 5',
		'ENSDARG00000041003' => 'odorant receptor, family C, subfamily 102, member 4',
		'ENSDARG00000092217' => 'odorant receptor, family C, subfamily 102, member 6, pseudogene',
		'ENSDARG00000041005' => 'odorant receptor, family C, subfamily 102, member 1',
		'ENSDARG00000068659' => 'odorant receptor, family C, subfamily 104, member 2',
		'ENSDARG00000068660' => 'odorant receptor, family C, subfamily 105, member 1',
		'ENSDARG00000075128' => 'odorant receptor, family C, subfamily 103, member 5',
		'ENSDARG00000094080' => 'odorant receptor, family C, subfamily 103, member 1',
		'ENSDARG00000041007' => 'si:ch211-133d24.25',
		'ENSDARG00000031703' => null,
		'ENSDARG00000094125' => 'odorant receptor, family C, subfamily 103, member 2',
		'ENSMUSG00000067971' => 'olfactory receptor 1321',
		'ENSMUSG00000071764' => 'olfactory receptor 1320',
		'ENSMUSG00000073997' => 'olfactory receptor 521',
		'ENSMUSG00000073998' => 'olfactory receptor 520'
	),
	'gene_name_arr' => array(
		'ENSDARG00000003090' => 'or103-4',
		'ENSDARG00000092218' => 'or103-3',
		'ENSDARG00000004598' => 'or102-2',
		'ENSDARG00000074966' => 'or102-3',
		'ENSDARG00000025600' => 'or102-5',
		'ENSDARG00000041003' => 'or102-4',
		'ENSDARG00000092217' => 'or102-6p',
		'ENSDARG00000041005' => 'or102-1',
		'ENSDARG00000068659' => 'or104-2',
		'ENSDARG00000068660' => 'or105-1',
		'ENSDARG00000075128' => 'or103-5',
		'ENSDARG00000094080' => 'or103-1',
		'ENSDARG00000041007' => 'si:ch211-133d24.25',
		'ENSDARG00000031703' => 'AL845428.1',
		'ENSDARG00000094125' => 'or103-2',
		'ENSMUSG00000067971' => 'Olfr1321',
		'ENSMUSG00000071764' => 'Olfr1320',
		'ENSMUSG00000073997' => 'Olfr521',
		'ENSMUSG00000073998' => 'Olfr520'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 5 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 6 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 7 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 8 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 9 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 10 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 11 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 1 => 'Adrenal',
		(int) 2 => 'Bladder',
		(int) 4 => 'Brain',
		(int) 18 => 'Breast',
		(int) 19 => 'Heart',
		(int) 23 => 'Kidney',
		(int) 29 => 'Liver',
		(int) 31 => 'Ovary',
		(int) 32 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 47,
	'longest_tissue_len' => (int) 7,
	'transcript_data' => array(
		'ENSDART00000019701' => array(
			'start' => '30736120',
			'end' => '30743311',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or103-4-201'
		),
		'ENSDART00000143003' => array(
			'start' => '30742018',
			'end' => '30743255',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or103-4-001'
		),
		'ENSDART00000145537' => array(
			'start' => '30736316',
			'end' => '30737278',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or103-3-001'
		),
		'ENSDART00000017810' => array(
			'start' => '30764546',
			'end' => '30765529',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or102-2-001'
		),
		'ENSDART00000110078' => array(
			'start' => '30769824',
			'end' => '30770810',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or102-3-001'
		),
		'ENSDART00000035686' => array(
			'start' => '30779485',
			'end' => '30781012',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or102-5-201'
		),
		'ENSDART00000134306' => array(
			'start' => '30779491',
			'end' => '30780444',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or102-5-001'
		),
		'ENSDART00000060083' => array(
			'start' => '30774365',
			'end' => '30775369',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or102-4-201'
		),
		'ENSDART00000130595' => array(
			'start' => '30774392',
			'end' => '30775589',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or102-4-202'
		),
		'ENSDART00000133495' => array(
			'start' => '30774365',
			'end' => '30775345',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or102-4-001'
		),
		'ENSDART00000142212' => array(
			'start' => '30777209',
			'end' => '30778118',
			'transcript_biotype' => 'unprocessed_pseudogene',
			'transcript_name' => 'or102-6p-001'
		),
		'ENSDART00000060087' => array(
			'start' => '30760223',
			'end' => '30761600',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or102-1-001'
		),
		'ENSDART00000099395' => array(
			'start' => '37529388',
			'end' => '37530746',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or104-2-201'
		),
		'ENSDART00000099397' => array(
			'start' => '37525273',
			'end' => '37526385',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or105-1-201'
		),
		'ENSDART00000100030' => array(
			'start' => '30726841',
			'end' => '30728409',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or103-5-201'
		),
		'ENSDART00000122888' => array(
			'start' => '30719092',
			'end' => '30727680',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or103-5-202'
		),
		'ENSDART00000127999' => array(
			'start' => '30722776',
			'end' => '30728409',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or103-5-203'
		),
		'ENSDART00000141429' => array(
			'start' => '30725884',
			'end' => '30728271',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or103-5-001'
		),
		'ENSDART00000014270' => array(
			'start' => '30724320',
			'end' => '30726367',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or103-1-001'
		),
		'ENSDART00000129404' => array(
			'start' => '30752934',
			'end' => '30755146',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'si:ch211-133d24.25-201'
		),
		'ENSDART00000154177' => array(
			'start' => '30752482',
			'end' => '30755500',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'si:ch211-133d24.25-001'
		),
		'ENSDART00000156729' => array(
			'start' => '30753562',
			'end' => '30755039',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'si:ch211-133d24.25-002'
		),
		'ENSDART00000045700' => array(
			'start' => '30733549',
			'end' => '30734512',
			'transcript_biotype' => 'pseudogene',
			'transcript_name' => 'AL845428.1-201'
		),
		'ENSDART00000145885' => array(
			'start' => '30733509',
			'end' => '30735663',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or103-2-001'
		),
		'ENSMUST00000088876' => array(
			'start' => '49726973',
			'end' => '49727932',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr1321-001'
		),
		'ENSMUST00000096449' => array(
			'start' => '49683504',
			'end' => '49684463',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr1320-001'
		),
		'ENSMUST00000098263' => array(
			'start' => '99767164',
			'end' => '99768130',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr521-201'
		),
		'ENSMUST00000098264' => array(
			'start' => '99735145',
			'end' => '99736095',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr520-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0001ST_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0009' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_000A' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_000C' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0001ST_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000092218' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Kidney',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0001ST_0002' => array(
		'genes_in_region' => array(
			'ENSDARG00000074966' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain'
		)
	),
	'CIL_0001ST_0003' => array(
		'genes_in_region' => array(
			'ENSDARG00000092217' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0001ST_0004' => array(
		'genes_in_region' => array(
			'ENSDARG00000041005' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain'
		)
	),
	'CIL_0001ST_0005' => array(
		'genes_in_region' => array(
			'ENSDARG00000068660' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney'
		)
	),
	'CIL_0001ST_0006' => array(
		'genes_in_region' => array(
			'ENSDARG00000074966' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0001ST_0007' => array(
		'genes_in_region' => array(
			'ENSDARG00000094080' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney'
		)
	),
	'CIL_0001ST_0008' => array(
		'genes_in_region' => array(
			'ENSDARG00000041005' => array(
				[maximum depth reached]
			),
			'ENSDARG00000092218' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Kidney',
			(int) 1 => 'Brain',
			(int) 2 => 'Brain'
		)
	),
	'CIL_0001ST_0009' => array(
		'genes_in_region' => array(
			'ENSDARG00000094080' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney'
		)
	),
	'CIL_0001ST_000A' => array(
		'genes_in_region' => array(
			'ENSDARG00000092218' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Kidney',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0001ST_000C' => array(
		'genes_in_region' => array(
			'ENSMUSG00000073997' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000073998' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Liver',
			(int) 2 => 'Adipose',
			(int) 3 => 'Adrenal',
			(int) 4 => 'Bladder',
			(int) 5 => 'Brain',
			(int) 6 => 'Breast',
			(int) 7 => 'Heart',
			(int) 8 => 'Liver',
			(int) 9 => 'Ovary',
			(int) 10 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSDARG00000003090' => 'odorant receptor, family C, subfamily 103, member 4',
	'ENSDARG00000092218' => 'odorant receptor, family C, subfamily 103, member 3',
	'ENSDARG00000004598' => 'odorant receptor, family C, subfamily 102, member 2',
	'ENSDARG00000074966' => 'odorant receptor, family C, subfamily 102, member 3',
	'ENSDARG00000025600' => 'odorant receptor, family C, subfamily 102, member 5',
	'ENSDARG00000041003' => 'odorant receptor, family C, subfamily 102, member 4',
	'ENSDARG00000092217' => 'odorant receptor, family C, subfamily 102, member 6, pseudogene',
	'ENSDARG00000041005' => 'odorant receptor, family C, subfamily 102, member 1',
	'ENSDARG00000068659' => 'odorant receptor, family C, subfamily 104, member 2',
	'ENSDARG00000068660' => 'odorant receptor, family C, subfamily 105, member 1',
	'ENSDARG00000075128' => 'odorant receptor, family C, subfamily 103, member 5',
	'ENSDARG00000094080' => 'odorant receptor, family C, subfamily 103, member 1',
	'ENSDARG00000041007' => 'si:ch211-133d24.25',
	'ENSDARG00000031703' => null,
	'ENSDARG00000094125' => 'odorant receptor, family C, subfamily 103, member 2',
	'ENSMUSG00000067971' => 'olfactory receptor 1321',
	'ENSMUSG00000071764' => 'olfactory receptor 1320',
	'ENSMUSG00000073997' => 'olfactory receptor 521',
	'ENSMUSG00000073998' => 'olfactory receptor 520'
)
$gene_name_arr = array(
	'ENSDARG00000003090' => 'or103-4',
	'ENSDARG00000092218' => 'or103-3',
	'ENSDARG00000004598' => 'or102-2',
	'ENSDARG00000074966' => 'or102-3',
	'ENSDARG00000025600' => 'or102-5',
	'ENSDARG00000041003' => 'or102-4',
	'ENSDARG00000092217' => 'or102-6p',
	'ENSDARG00000041005' => 'or102-1',
	'ENSDARG00000068659' => 'or104-2',
	'ENSDARG00000068660' => 'or105-1',
	'ENSDARG00000075128' => 'or103-5',
	'ENSDARG00000094080' => 'or103-1',
	'ENSDARG00000041007' => 'si:ch211-133d24.25',
	'ENSDARG00000031703' => 'AL845428.1',
	'ENSDARG00000094125' => 'or103-2',
	'ENSMUSG00000067971' => 'Olfr1321',
	'ENSMUSG00000071764' => 'Olfr1320',
	'ENSMUSG00000073997' => 'Olfr521',
	'ENSMUSG00000073998' => 'Olfr520'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_0001',
			'tax_id' => '7955',
			'chromosome' => '15',
			'seq_start' => '30736120',
			'seq_end' => '30743311',
			'region_length' => '7191',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000003090-ENSDARG00000003090'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_0002',
			'tax_id' => '7955',
			'chromosome' => '15',
			'seq_start' => '30764546',
			'seq_end' => '30770810',
			'region_length' => '6264',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000004598-ENSDARG00000074966'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_0003',
			'tax_id' => '7955',
			'chromosome' => '15',
			'seq_start' => '30774365',
			'seq_end' => '30781012',
			'region_length' => '6647',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000041003-ENSDARG00000025600'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_0004',
			'tax_id' => '7955',
			'chromosome' => '15',
			'seq_start' => '30760223',
			'seq_end' => '30765529',
			'region_length' => '5306',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000041005-ENSDARG00000004598'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_0005',
			'tax_id' => '7955',
			'chromosome' => '10',
			'seq_start' => '37525273',
			'seq_end' => '37530746',
			'region_length' => '5473',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000068660-ENSDARG00000068659'
		)
	),
	(int) 5 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_0006',
			'tax_id' => '7955',
			'chromosome' => '15',
			'seq_start' => '30769824',
			'seq_end' => '30775589',
			'region_length' => '5765',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000074966-ENSDARG00000041003'
		)
	),
	(int) 6 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_0007',
			'tax_id' => '7955',
			'chromosome' => '15',
			'seq_start' => '30719092',
			'seq_end' => '30728409',
			'region_length' => '9317',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000075128-ENSDARG00000075128'
		)
	),
	(int) 7 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_0008',
			'tax_id' => '7955',
			'chromosome' => '15',
			'seq_start' => '30736316',
			'seq_end' => '30761600',
			'region_length' => '25284',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000092218-ENSDARG00000041005'
		)
	),
	(int) 8 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_0009',
			'tax_id' => '7955',
			'chromosome' => '15',
			'seq_start' => '30724320',
			'seq_end' => '30735663',
			'region_length' => '11343',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000094080-ENSDARG00000094125'
		)
	),
	(int) 9 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_000A',
			'tax_id' => '7955',
			'chromosome' => '15',
			'seq_start' => '30733509',
			'seq_end' => '30743311',
			'region_length' => '9802',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000094125-ENSDARG00000003090'
		)
	),
	(int) 10 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_000B',
			'tax_id' => '10090',
			'chromosome' => 'X',
			'seq_start' => '49683504',
			'seq_end' => '49727932',
			'region_length' => '44428',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000071764-ENSMUSG00000067971'
		)
	),
	(int) 11 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_000C',
			'tax_id' => '10090',
			'chromosome' => '7',
			'seq_start' => '99735145',
			'seq_end' => '99768130',
			'region_length' => '32985',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000073998-ENSMUSG00000073997'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 1 => 'Adrenal',
	(int) 2 => 'Bladder',
	(int) 4 => 'Brain',
	(int) 18 => 'Breast',
	(int) 19 => 'Heart',
	(int) 23 => 'Kidney',
	(int) 29 => 'Liver',
	(int) 31 => 'Ovary',
	(int) 32 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 47
$longest_tissue_len = (int) 7
$transcript_data = array(
	'ENSDART00000019701' => array(
		'start' => '30736120',
		'end' => '30743311',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or103-4-201'
	),
	'ENSDART00000143003' => array(
		'start' => '30742018',
		'end' => '30743255',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or103-4-001'
	),
	'ENSDART00000145537' => array(
		'start' => '30736316',
		'end' => '30737278',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or103-3-001'
	),
	'ENSDART00000017810' => array(
		'start' => '30764546',
		'end' => '30765529',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or102-2-001'
	),
	'ENSDART00000110078' => array(
		'start' => '30769824',
		'end' => '30770810',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or102-3-001'
	),
	'ENSDART00000035686' => array(
		'start' => '30779485',
		'end' => '30781012',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or102-5-201'
	),
	'ENSDART00000134306' => array(
		'start' => '30779491',
		'end' => '30780444',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or102-5-001'
	),
	'ENSDART00000060083' => array(
		'start' => '30774365',
		'end' => '30775369',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or102-4-201'
	),
	'ENSDART00000130595' => array(
		'start' => '30774392',
		'end' => '30775589',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or102-4-202'
	),
	'ENSDART00000133495' => array(
		'start' => '30774365',
		'end' => '30775345',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or102-4-001'
	),
	'ENSDART00000142212' => array(
		'start' => '30777209',
		'end' => '30778118',
		'transcript_biotype' => 'unprocessed_pseudogene',
		'transcript_name' => 'or102-6p-001'
	),
	'ENSDART00000060087' => array(
		'start' => '30760223',
		'end' => '30761600',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or102-1-001'
	),
	'ENSDART00000099395' => array(
		'start' => '37529388',
		'end' => '37530746',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or104-2-201'
	),
	'ENSDART00000099397' => array(
		'start' => '37525273',
		'end' => '37526385',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or105-1-201'
	),
	'ENSDART00000100030' => array(
		'start' => '30726841',
		'end' => '30728409',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or103-5-201'
	),
	'ENSDART00000122888' => array(
		'start' => '30719092',
		'end' => '30727680',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or103-5-202'
	),
	'ENSDART00000127999' => array(
		'start' => '30722776',
		'end' => '30728409',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or103-5-203'
	),
	'ENSDART00000141429' => array(
		'start' => '30725884',
		'end' => '30728271',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or103-5-001'
	),
	'ENSDART00000014270' => array(
		'start' => '30724320',
		'end' => '30726367',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or103-1-001'
	),
	'ENSDART00000129404' => array(
		'start' => '30752934',
		'end' => '30755146',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'si:ch211-133d24.25-201'
	),
	'ENSDART00000154177' => array(
		'start' => '30752482',
		'end' => '30755500',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'si:ch211-133d24.25-001'
	),
	'ENSDART00000156729' => array(
		'start' => '30753562',
		'end' => '30755039',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'si:ch211-133d24.25-002'
	),
	'ENSDART00000045700' => array(
		'start' => '30733549',
		'end' => '30734512',
		'transcript_biotype' => 'pseudogene',
		'transcript_name' => 'AL845428.1-201'
	),
	'ENSDART00000145885' => array(
		'start' => '30733509',
		'end' => '30735663',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or103-2-001'
	),
	'ENSMUST00000088876' => array(
		'start' => '49726973',
		'end' => '49727932',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr1321-001'
	),
	'ENSMUST00000096449' => array(
		'start' => '49683504',
		'end' => '49684463',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr1320-001'
	),
	'ENSMUST00000098263' => array(
		'start' => '99767164',
		'end' => '99768130',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr521-201'
	),
	'ENSMUST00000098264' => array(
		'start' => '99735145',
		'end' => '99736095',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr520-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0001ST_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000092218' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Kidney',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0001ST_0002' => array(
		'genes_in_region' => array(
			'ENSDARG00000074966' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain'
		)
	),
	'CIL_0001ST_0003' => array(
		'genes_in_region' => array(
			'ENSDARG00000092217' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0001ST_0004' => array(
		'genes_in_region' => array(
			'ENSDARG00000041005' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain'
		)
	),
	'CIL_0001ST_0005' => array(
		'genes_in_region' => array(
			'ENSDARG00000068660' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney'
		)
	),
	'CIL_0001ST_0006' => array(
		'genes_in_region' => array(
			'ENSDARG00000074966' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0001ST_0007' => array(
		'genes_in_region' => array(
			'ENSDARG00000094080' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney'
		)
	),
	'CIL_0001ST_0008' => array(
		'genes_in_region' => array(
			'ENSDARG00000041005' => array(
				[maximum depth reached]
			),
			'ENSDARG00000092218' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Kidney',
			(int) 1 => 'Brain',
			(int) 2 => 'Brain'
		)
	),
	'CIL_0001ST_0009' => array(
		'genes_in_region' => array(
			'ENSDARG00000094080' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney'
		)
	),
	'CIL_0001ST_000A' => array(
		'genes_in_region' => array(
			'ENSDARG00000092218' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Kidney',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0001ST_000C' => array(
		'genes_in_region' => array(
			'ENSMUSG00000073997' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000073998' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Liver',
			(int) 2 => 'Adipose',
			(int) 3 => 'Adrenal',
			(int) 4 => 'Bladder',
			(int) 5 => 'Brain',
			(int) 6 => 'Breast',
			(int) 7 => 'Heart',
			(int) 8 => 'Liver',
			(int) 9 => 'Ovary',
			(int) 10 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0001ST_000B',
		'tax_id' => '10090',
		'chromosome' => 'X',
		'seq_start' => '49683504',
		'seq_end' => '49727932',
		'region_length' => '44428',
		'region_type' => 'CGP',
		'el_id' => 'ENSMUSG00000071764-ENSMUSG00000067971'
	)
)
$gene_el = array(
	'ENSDART00000145537' => array(
		'Brain' => array(
			'average_FPKM' => '0.145',
			'stddev_FPKM' => '0.05'
		)
	)
)
$gene_key = 'ENSDARG00000092218'
$is_first = false
$tran_el = array(
	'Brain' => array(
		'average_FPKM' => '0.145',
		'stddev_FPKM' => '0.05'
	)
)
$tran_key = 'ENSDART00000145537'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0001ST_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0009' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_000A' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_000C' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSDARG00000003090' => 'odorant receptor, family C, subfamily 103, member 4',
		'ENSDARG00000092218' => 'odorant receptor, family C, subfamily 103, member 3',
		'ENSDARG00000004598' => 'odorant receptor, family C, subfamily 102, member 2',
		'ENSDARG00000074966' => 'odorant receptor, family C, subfamily 102, member 3',
		'ENSDARG00000025600' => 'odorant receptor, family C, subfamily 102, member 5',
		'ENSDARG00000041003' => 'odorant receptor, family C, subfamily 102, member 4',
		'ENSDARG00000092217' => 'odorant receptor, family C, subfamily 102, member 6, pseudogene',
		'ENSDARG00000041005' => 'odorant receptor, family C, subfamily 102, member 1',
		'ENSDARG00000068659' => 'odorant receptor, family C, subfamily 104, member 2',
		'ENSDARG00000068660' => 'odorant receptor, family C, subfamily 105, member 1',
		'ENSDARG00000075128' => 'odorant receptor, family C, subfamily 103, member 5',
		'ENSDARG00000094080' => 'odorant receptor, family C, subfamily 103, member 1',
		'ENSDARG00000041007' => 'si:ch211-133d24.25',
		'ENSDARG00000031703' => null,
		'ENSDARG00000094125' => 'odorant receptor, family C, subfamily 103, member 2',
		'ENSMUSG00000067971' => 'olfactory receptor 1321',
		'ENSMUSG00000071764' => 'olfactory receptor 1320',
		'ENSMUSG00000073997' => 'olfactory receptor 521',
		'ENSMUSG00000073998' => 'olfactory receptor 520'
	),
	'gene_name_arr' => array(
		'ENSDARG00000003090' => 'or103-4',
		'ENSDARG00000092218' => 'or103-3',
		'ENSDARG00000004598' => 'or102-2',
		'ENSDARG00000074966' => 'or102-3',
		'ENSDARG00000025600' => 'or102-5',
		'ENSDARG00000041003' => 'or102-4',
		'ENSDARG00000092217' => 'or102-6p',
		'ENSDARG00000041005' => 'or102-1',
		'ENSDARG00000068659' => 'or104-2',
		'ENSDARG00000068660' => 'or105-1',
		'ENSDARG00000075128' => 'or103-5',
		'ENSDARG00000094080' => 'or103-1',
		'ENSDARG00000041007' => 'si:ch211-133d24.25',
		'ENSDARG00000031703' => 'AL845428.1',
		'ENSDARG00000094125' => 'or103-2',
		'ENSMUSG00000067971' => 'Olfr1321',
		'ENSMUSG00000071764' => 'Olfr1320',
		'ENSMUSG00000073997' => 'Olfr521',
		'ENSMUSG00000073998' => 'Olfr520'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 5 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 6 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 7 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 8 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 9 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 10 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 11 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 1 => 'Adrenal',
		(int) 2 => 'Bladder',
		(int) 4 => 'Brain',
		(int) 18 => 'Breast',
		(int) 19 => 'Heart',
		(int) 23 => 'Kidney',
		(int) 29 => 'Liver',
		(int) 31 => 'Ovary',
		(int) 32 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 47,
	'longest_tissue_len' => (int) 7,
	'transcript_data' => array(
		'ENSDART00000019701' => array(
			'start' => '30736120',
			'end' => '30743311',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or103-4-201'
		),
		'ENSDART00000143003' => array(
			'start' => '30742018',
			'end' => '30743255',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or103-4-001'
		),
		'ENSDART00000145537' => array(
			'start' => '30736316',
			'end' => '30737278',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or103-3-001'
		),
		'ENSDART00000017810' => array(
			'start' => '30764546',
			'end' => '30765529',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or102-2-001'
		),
		'ENSDART00000110078' => array(
			'start' => '30769824',
			'end' => '30770810',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or102-3-001'
		),
		'ENSDART00000035686' => array(
			'start' => '30779485',
			'end' => '30781012',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or102-5-201'
		),
		'ENSDART00000134306' => array(
			'start' => '30779491',
			'end' => '30780444',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or102-5-001'
		),
		'ENSDART00000060083' => array(
			'start' => '30774365',
			'end' => '30775369',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or102-4-201'
		),
		'ENSDART00000130595' => array(
			'start' => '30774392',
			'end' => '30775589',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or102-4-202'
		),
		'ENSDART00000133495' => array(
			'start' => '30774365',
			'end' => '30775345',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or102-4-001'
		),
		'ENSDART00000142212' => array(
			'start' => '30777209',
			'end' => '30778118',
			'transcript_biotype' => 'unprocessed_pseudogene',
			'transcript_name' => 'or102-6p-001'
		),
		'ENSDART00000060087' => array(
			'start' => '30760223',
			'end' => '30761600',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or102-1-001'
		),
		'ENSDART00000099395' => array(
			'start' => '37529388',
			'end' => '37530746',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or104-2-201'
		),
		'ENSDART00000099397' => array(
			'start' => '37525273',
			'end' => '37526385',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or105-1-201'
		),
		'ENSDART00000100030' => array(
			'start' => '30726841',
			'end' => '30728409',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or103-5-201'
		),
		'ENSDART00000122888' => array(
			'start' => '30719092',
			'end' => '30727680',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or103-5-202'
		),
		'ENSDART00000127999' => array(
			'start' => '30722776',
			'end' => '30728409',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or103-5-203'
		),
		'ENSDART00000141429' => array(
			'start' => '30725884',
			'end' => '30728271',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or103-5-001'
		),
		'ENSDART00000014270' => array(
			'start' => '30724320',
			'end' => '30726367',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or103-1-001'
		),
		'ENSDART00000129404' => array(
			'start' => '30752934',
			'end' => '30755146',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'si:ch211-133d24.25-201'
		),
		'ENSDART00000154177' => array(
			'start' => '30752482',
			'end' => '30755500',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'si:ch211-133d24.25-001'
		),
		'ENSDART00000156729' => array(
			'start' => '30753562',
			'end' => '30755039',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'si:ch211-133d24.25-002'
		),
		'ENSDART00000045700' => array(
			'start' => '30733549',
			'end' => '30734512',
			'transcript_biotype' => 'pseudogene',
			'transcript_name' => 'AL845428.1-201'
		),
		'ENSDART00000145885' => array(
			'start' => '30733509',
			'end' => '30735663',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'or103-2-001'
		),
		'ENSMUST00000088876' => array(
			'start' => '49726973',
			'end' => '49727932',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr1321-001'
		),
		'ENSMUST00000096449' => array(
			'start' => '49683504',
			'end' => '49684463',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr1320-001'
		),
		'ENSMUST00000098263' => array(
			'start' => '99767164',
			'end' => '99768130',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr521-201'
		),
		'ENSMUST00000098264' => array(
			'start' => '99735145',
			'end' => '99736095',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr520-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0001ST_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_0009' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_000A' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0001ST_000C' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0001ST_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000092218' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Kidney',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0001ST_0002' => array(
		'genes_in_region' => array(
			'ENSDARG00000074966' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain'
		)
	),
	'CIL_0001ST_0003' => array(
		'genes_in_region' => array(
			'ENSDARG00000092217' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0001ST_0004' => array(
		'genes_in_region' => array(
			'ENSDARG00000041005' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain'
		)
	),
	'CIL_0001ST_0005' => array(
		'genes_in_region' => array(
			'ENSDARG00000068660' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney'
		)
	),
	'CIL_0001ST_0006' => array(
		'genes_in_region' => array(
			'ENSDARG00000074966' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0001ST_0007' => array(
		'genes_in_region' => array(
			'ENSDARG00000094080' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney'
		)
	),
	'CIL_0001ST_0008' => array(
		'genes_in_region' => array(
			'ENSDARG00000041005' => array(
				[maximum depth reached]
			),
			'ENSDARG00000092218' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Kidney',
			(int) 1 => 'Brain',
			(int) 2 => 'Brain'
		)
	),
	'CIL_0001ST_0009' => array(
		'genes_in_region' => array(
			'ENSDARG00000094080' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney'
		)
	),
	'CIL_0001ST_000A' => array(
		'genes_in_region' => array(
			'ENSDARG00000092218' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Kidney',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0001ST_000C' => array(
		'genes_in_region' => array(
			'ENSMUSG00000073997' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000073998' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Liver',
			(int) 2 => 'Adipose',
			(int) 3 => 'Adrenal',
			(int) 4 => 'Bladder',
			(int) 5 => 'Brain',
			(int) 6 => 'Breast',
			(int) 7 => 'Heart',
			(int) 8 => 'Liver',
			(int) 9 => 'Ovary',
			(int) 10 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSDARG00000003090' => 'odorant receptor, family C, subfamily 103, member 4',
	'ENSDARG00000092218' => 'odorant receptor, family C, subfamily 103, member 3',
	'ENSDARG00000004598' => 'odorant receptor, family C, subfamily 102, member 2',
	'ENSDARG00000074966' => 'odorant receptor, family C, subfamily 102, member 3',
	'ENSDARG00000025600' => 'odorant receptor, family C, subfamily 102, member 5',
	'ENSDARG00000041003' => 'odorant receptor, family C, subfamily 102, member 4',
	'ENSDARG00000092217' => 'odorant receptor, family C, subfamily 102, member 6, pseudogene',
	'ENSDARG00000041005' => 'odorant receptor, family C, subfamily 102, member 1',
	'ENSDARG00000068659' => 'odorant receptor, family C, subfamily 104, member 2',
	'ENSDARG00000068660' => 'odorant receptor, family C, subfamily 105, member 1',
	'ENSDARG00000075128' => 'odorant receptor, family C, subfamily 103, member 5',
	'ENSDARG00000094080' => 'odorant receptor, family C, subfamily 103, member 1',
	'ENSDARG00000041007' => 'si:ch211-133d24.25',
	'ENSDARG00000031703' => null,
	'ENSDARG00000094125' => 'odorant receptor, family C, subfamily 103, member 2',
	'ENSMUSG00000067971' => 'olfactory receptor 1321',
	'ENSMUSG00000071764' => 'olfactory receptor 1320',
	'ENSMUSG00000073997' => 'olfactory receptor 521',
	'ENSMUSG00000073998' => 'olfactory receptor 520'
)
$gene_name_arr = array(
	'ENSDARG00000003090' => 'or103-4',
	'ENSDARG00000092218' => 'or103-3',
	'ENSDARG00000004598' => 'or102-2',
	'ENSDARG00000074966' => 'or102-3',
	'ENSDARG00000025600' => 'or102-5',
	'ENSDARG00000041003' => 'or102-4',
	'ENSDARG00000092217' => 'or102-6p',
	'ENSDARG00000041005' => 'or102-1',
	'ENSDARG00000068659' => 'or104-2',
	'ENSDARG00000068660' => 'or105-1',
	'ENSDARG00000075128' => 'or103-5',
	'ENSDARG00000094080' => 'or103-1',
	'ENSDARG00000041007' => 'si:ch211-133d24.25',
	'ENSDARG00000031703' => 'AL845428.1',
	'ENSDARG00000094125' => 'or103-2',
	'ENSMUSG00000067971' => 'Olfr1321',
	'ENSMUSG00000071764' => 'Olfr1320',
	'ENSMUSG00000073997' => 'Olfr521',
	'ENSMUSG00000073998' => 'Olfr520'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_0001',
			'tax_id' => '7955',
			'chromosome' => '15',
			'seq_start' => '30736120',
			'seq_end' => '30743311',
			'region_length' => '7191',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000003090-ENSDARG00000003090'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_0002',
			'tax_id' => '7955',
			'chromosome' => '15',
			'seq_start' => '30764546',
			'seq_end' => '30770810',
			'region_length' => '6264',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000004598-ENSDARG00000074966'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_0003',
			'tax_id' => '7955',
			'chromosome' => '15',
			'seq_start' => '30774365',
			'seq_end' => '30781012',
			'region_length' => '6647',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000041003-ENSDARG00000025600'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_0004',
			'tax_id' => '7955',
			'chromosome' => '15',
			'seq_start' => '30760223',
			'seq_end' => '30765529',
			'region_length' => '5306',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000041005-ENSDARG00000004598'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_0005',
			'tax_id' => '7955',
			'chromosome' => '10',
			'seq_start' => '37525273',
			'seq_end' => '37530746',
			'region_length' => '5473',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000068660-ENSDARG00000068659'
		)
	),
	(int) 5 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_0006',
			'tax_id' => '7955',
			'chromosome' => '15',
			'seq_start' => '30769824',
			'seq_end' => '30775589',
			'region_length' => '5765',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000074966-ENSDARG00000041003'
		)
	),
	(int) 6 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_0007',
			'tax_id' => '7955',
			'chromosome' => '15',
			'seq_start' => '30719092',
			'seq_end' => '30728409',
			'region_length' => '9317',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000075128-ENSDARG00000075128'
		)
	),
	(int) 7 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_0008',
			'tax_id' => '7955',
			'chromosome' => '15',
			'seq_start' => '30736316',
			'seq_end' => '30761600',
			'region_length' => '25284',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000092218-ENSDARG00000041005'
		)
	),
	(int) 8 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_0009',
			'tax_id' => '7955',
			'chromosome' => '15',
			'seq_start' => '30724320',
			'seq_end' => '30735663',
			'region_length' => '11343',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000094080-ENSDARG00000094125'
		)
	),
	(int) 9 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_000A',
			'tax_id' => '7955',
			'chromosome' => '15',
			'seq_start' => '30733509',
			'seq_end' => '30743311',
			'region_length' => '9802',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000094125-ENSDARG00000003090'
		)
	),
	(int) 10 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_000B',
			'tax_id' => '10090',
			'chromosome' => 'X',
			'seq_start' => '49683504',
			'seq_end' => '49727932',
			'region_length' => '44428',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000071764-ENSMUSG00000067971'
		)
	),
	(int) 11 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0001ST_000C',
			'tax_id' => '10090',
			'chromosome' => '7',
			'seq_start' => '99735145',
			'seq_end' => '99768130',
			'region_length' => '32985',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000073998-ENSMUSG00000073997'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 1 => 'Adrenal',
	(int) 2 => 'Bladder',
	(int) 4 => 'Brain',
	(int) 18 => 'Breast',
	(int) 19 => 'Heart',
	(int) 23 => 'Kidney',
	(int) 29 => 'Liver',
	(int) 31 => 'Ovary',
	(int) 32 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 47
$longest_tissue_len = (int) 7
$transcript_data = array(
	'ENSDART00000019701' => array(
		'start' => '30736120',
		'end' => '30743311',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or103-4-201'
	),
	'ENSDART00000143003' => array(
		'start' => '30742018',
		'end' => '30743255',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or103-4-001'
	),
	'ENSDART00000145537' => array(
		'start' => '30736316',
		'end' => '30737278',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or103-3-001'
	),
	'ENSDART00000017810' => array(
		'start' => '30764546',
		'end' => '30765529',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or102-2-001'
	),
	'ENSDART00000110078' => array(
		'start' => '30769824',
		'end' => '30770810',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or102-3-001'
	),
	'ENSDART00000035686' => array(
		'start' => '30779485',
		'end' => '30781012',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or102-5-201'
	),
	'ENSDART00000134306' => array(
		'start' => '30779491',
		'end' => '30780444',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or102-5-001'
	),
	'ENSDART00000060083' => array(
		'start' => '30774365',
		'end' => '30775369',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or102-4-201'
	),
	'ENSDART00000130595' => array(
		'start' => '30774392',
		'end' => '30775589',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or102-4-202'
	),
	'ENSDART00000133495' => array(
		'start' => '30774365',
		'end' => '30775345',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or102-4-001'
	),
	'ENSDART00000142212' => array(
		'start' => '30777209',
		'end' => '30778118',
		'transcript_biotype' => 'unprocessed_pseudogene',
		'transcript_name' => 'or102-6p-001'
	),
	'ENSDART00000060087' => array(
		'start' => '30760223',
		'end' => '30761600',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or102-1-001'
	),
	'ENSDART00000099395' => array(
		'start' => '37529388',
		'end' => '37530746',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or104-2-201'
	),
	'ENSDART00000099397' => array(
		'start' => '37525273',
		'end' => '37526385',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or105-1-201'
	),
	'ENSDART00000100030' => array(
		'start' => '30726841',
		'end' => '30728409',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or103-5-201'
	),
	'ENSDART00000122888' => array(
		'start' => '30719092',
		'end' => '30727680',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or103-5-202'
	),
	'ENSDART00000127999' => array(
		'start' => '30722776',
		'end' => '30728409',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or103-5-203'
	),
	'ENSDART00000141429' => array(
		'start' => '30725884',
		'end' => '30728271',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or103-5-001'
	),
	'ENSDART00000014270' => array(
		'start' => '30724320',
		'end' => '30726367',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or103-1-001'
	),
	'ENSDART00000129404' => array(
		'start' => '30752934',
		'end' => '30755146',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'si:ch211-133d24.25-201'
	),
	'ENSDART00000154177' => array(
		'start' => '30752482',
		'end' => '30755500',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'si:ch211-133d24.25-001'
	),
	'ENSDART00000156729' => array(
		'start' => '30753562',
		'end' => '30755039',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'si:ch211-133d24.25-002'
	),
	'ENSDART00000045700' => array(
		'start' => '30733549',
		'end' => '30734512',
		'transcript_biotype' => 'pseudogene',
		'transcript_name' => 'AL845428.1-201'
	),
	'ENSDART00000145885' => array(
		'start' => '30733509',
		'end' => '30735663',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'or103-2-001'
	),
	'ENSMUST00000088876' => array(
		'start' => '49726973',
		'end' => '49727932',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr1321-001'
	),
	'ENSMUST00000096449' => array(
		'start' => '49683504',
		'end' => '49684463',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr1320-001'
	),
	'ENSMUST00000098263' => array(
		'start' => '99767164',
		'end' => '99768130',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr521-201'
	),
	'ENSMUST00000098264' => array(
		'start' => '99735145',
		'end' => '99736095',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr520-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0001ST_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000092218' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Kidney',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0001ST_0002' => array(
		'genes_in_region' => array(
			'ENSDARG00000074966' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain'
		)
	),
	'CIL_0001ST_0003' => array(
		'genes_in_region' => array(
			'ENSDARG00000092217' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0001ST_0004' => array(
		'genes_in_region' => array(
			'ENSDARG00000041005' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain'
		)
	),
	'CIL_0001ST_0005' => array(
		'genes_in_region' => array(
			'ENSDARG00000068660' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney'
		)
	),
	'CIL_0001ST_0006' => array(
		'genes_in_region' => array(
			'ENSDARG00000074966' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0001ST_0007' => array(
		'genes_in_region' => array(
			'ENSDARG00000094080' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney'
		)
	),
	'CIL_0001ST_0008' => array(
		'genes_in_region' => array(
			'ENSDARG00000041005' => array(
				[maximum depth reached]
			),
			'ENSDARG00000092218' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Kidney',
			(int) 1 => 'Brain',
			(int) 2 => 'Brain'
		)
	),
	'CIL_0001ST_0009' => array(
		'genes_in_region' => array(
			'ENSDARG00000094080' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney'
		)
	),
	'CIL_0001ST_000A' => array(
		'genes_in_region' => array(
			'ENSDARG00000092218' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Kidney',
			(int) 1 => 'Brain'
		)
	),
	'CIL_0001ST_000C' => array(
		'genes_in_region' => array(
			'ENSMUSG00000073997' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000073998' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Liver',
			(int) 2 => 'Adipose',
			(int) 3 => 'Adrenal',
			(int) 4 => 'Bladder',
			(int) 5 => 'Brain',
			(int) 6 => 'Breast',
			(int) 7 => 'Heart',
			(int) 8 => 'Liver',
			(int) 9 => 'Ovary',
			(int) 10 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0001ST_000B',
		'tax_id' => '10090',
		'chromosome' => 'X',
		'seq_start' => '49683504',
		'seq_end' => '49727932',
		'region_length' => '44428',
		'region_type' => 'CGP',
		'el_id' => 'ENSMUSG00000071764-ENSMUSG00000067971'
	)
)
$gene_el = array(
	'ENSDART00000145537' => array(
		'Brain' => array(
			'average_FPKM' => '0.145',
			'stddev_FPKM' => '0.05'
		)
	)
)
$gene_key = 'ENSDARG00000092218'
$is_first = false
$tran_el = array(
	'Brain' => array(
		'average_FPKM' => '0.145',
		'stddev_FPKM' => '0.05'
	)
)
$tran_key = 'ENSDART00000145537'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
ENSMUSG00000071764-ENSMUSG00000067971		CGP	10090	X:49683504-49727932
Gene		Transcript	Position	Biotype

CIL_0001ST_000C (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000073998-ENSMUSG00000073997	CGP	10090	7:99735145-99768130
Gene	Transcript	Position	Biotype
ENSMUSG00000073997 (Olfr521) olfactory receptor 521	ENSMUST00000098263 (Olfr521-201)	99767164-99768130	protein_coding
ENSMUSG00000073998 (Olfr520) olfactory receptor 520	ENSMUST00000098264 (Olfr520-201)	99735145-99736095	protein_coding

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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