C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001UF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000132911-ENSG00000155511 CGP 9606 5:152391532-153813869
GeneTranscriptPositionBiotype
ENSG00000132911 (NMUR2)
neuromedin U receptor 2 		ENST00000255262 (NMUR2-001) 152391532-152405279 protein_coding
ENST00000518933 (NMUR2-002) 152395498-152433368 processed_transcript
ENSG00000155511 (GRIA1)
glutamate receptor, ionotropic, AMPA 1 		ENST00000285900 (GRIA1-001) 153490546-153813869 protein_coding
ENST00000340592 (GRIA1-005) 153490816-153811601 protein_coding
ENST00000448073 (GRIA1-014) 153492172-153811272 protein_coding
ENST00000474198 (GRIA1-002) 153490644-153494334 retained_intron
ENST00000481559 (GRIA1-006) 153489615-153706172 retained_intron
ENST00000492291 (GRIA1-003) 153493990-153525522 processed_transcript
ENST00000517469 (GRIA1-012) 153491197-153558095 processed_transcript
ENST00000518142 (GRIA1-013) 153490655-153811271 protein_coding
ENST00000518783 (GRIA1-007) 153492172-153813680 protein_coding
ENST00000518862 (GRIA1-009) 153490482-153650507 processed_transcript
ENST00000520353 (GRIA1-008) 153490268-153494065 processed_transcript
ENST00000520966 (GRIA1-011) 153573228-153655865 processed_transcript
ENST00000521843 (GRIA1-010) 153491297-153811619 protein_coding
ENSG00000242080 (CTC-550M4.1)
 ENST00000467232 (CTC-550M4.1-001) 152495718-152496017 processed_pseudogene
ENSG00000242976 (RN7SL177P)
RNA, 7SL, cytoplasmic 177, pseudogene 		ENST00000476596 (RN7SL177P-201) 153755382-153755680 misc_RNA
ENSG00000249484 (LINC01470)
long intergenic non-protein coding RNA 1470 		ENST00000503048 (LINC01470-001) 152620505-153223543 lincRNA
ENST00000506723 (LINC01470-002) 152618965-152689529 lincRNA
ENST00000511419 (LINC01470-005) 152885427-152971783 lincRNA
ENST00000522300 (LINC01470-003) 152619034-152972349 lincRNA
ENST00000584829 (LINC01470-006) 152938838-152973203 lincRNA
CIL_0001UF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037393-ENSMUSG00000020524 CGP 10090 11:56024987-57330244
GeneTranscriptPositionBiotype
ENSMUSG00000020524 (Gria1)
glutamate receptor, ionotropic, AMPA1 (alpha 1) 		ENSMUST00000036315 (Gria1-004) 57011810-57330244 protein_coding
ENSMUST00000094179 (Gria1-005) 57011956-57330243 protein_coding
ENSMUST00000125292 (Gria1-003) 57011387-57015291 protein_coding
ENSMUST00000151045 (Gria1-006) 57013046-57330240 protein_coding
ENSMUST00000173531 (Gria1-007) 57176518-57189793 processed_transcript
ENSMUSG00000037393 (Nmur2)
neuromedin U receptor 2 		ENSMUST00000037682 (Nmur2-001) 56024987-56041010 protein_coding
ENSMUSG00000081749 (Gm12241)
predicted gene 12241 		ENSMUST00000118330 (Gm12241-001) 56459349-56460074 processed_pseudogene
ENSMUSG00000084169 (Gm12240)
predicted gene 12240 		ENSMUST00000120178 (Gm12240-001) 56262855-56263083 processed_pseudogene
ENSMUSG00000086020 (Gm12239)
predicted gene 12239 		ENSMUST00000134285 (Gm12239-001) 55772088-56070848 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001UF_0001ENSG00000132911ENST00000255262ENST00000518933ENSG00000155511ENST00000285900ENST00000340592ENST00000448073ENST00000474198ENST00000481559ENST00000492291ENST00000517469ENST00000518142ENST00000518783ENST00000518862ENST00000520353ENST00000520966ENST00000521843ENSG00000242080ENST00000467232ENSG00000242976ENST00000476596ENSG00000249484ENST00000503048ENST00000506723ENST00000511419ENST00000522300ENST00000584829CIL_0001UF_0002ENSMUSG00000020524ENSMUST00000036315ENSMUST00000094179ENSMUST00000125292ENSMUST00000151045ENSMUST00000173531ENSMUSG00000037393ENSMUST00000037682ENSMUSG00000081749ENSMUST00000118330ENSMUSG00000084169ENSMUST00000120178ENSMUSG00000086020ENSMUST00000134285
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001UF_0001ENSG00000132911ENST00000255262ENST00000518933ENSG00000155511ENST00000285900ENST00000448073ENST00000474198ENST00000481559ENST00000517469ENST00000518142ENST00000518783ENST00000518862ENSG00000242080ENST00000467232ENSG00000242976ENST00000476596ENSG00000249484ENST00000503048ENST00000506723ENST00000511419ENST00000522300ENST00000584829CIL_0001UF_0002ENSMUSG00000020524ENSMUST00000036315ENSMUST00000094179ENSMUST00000151045ENSMUST00000173531ENSMUSG00000037393ENSMUST00000037682ENSMUSG00000081749ENSMUST00000118330ENSMUSG00000084169ENSMUST00000120178ENSMUSG00000086020ENSMUST00000134285
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132911 ENST00000255262 N/A N/A N/A 0.216±0.00 0.007±0.00 N/A 0.026±0.00 0.055±0.05 N/A 0.135±0.00 0.122±0.00 0.667±0.63 0.057±0.01 0.539±0.15
ENST00000518933 N/A N/A N/A 0.656±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000155511 ENST00000285900 N/A 0.023±0.00 N/A 8.511±2.74 N/A N/A N/A N/A N/A N/A N/A N/A 0.009±0.00 N/A
ENST00000340592 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448073 N/A N/A N/A N/A N/A 0.146±0.00 N/A 0.250±0.00 N/A N/A 0.315±0.00 0.087±0.04 N/A 1.190±0.00
ENST00000474198 N/A N/A N/A N/A N/A N/A 0.158±0.00 N/A 0.710±0.00 N/A N/A N/A 0.023±0.00 N/A
ENST00000481559 N/A N/A N/A N/A 0.092±0.00 N/A 0.023±0.00 N/A 0.235±0.00 N/A N/A N/A 0.008±0.00 N/A
ENST00000492291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517469 N/A 0.159±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518142 N/A N/A N/A 4.600±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.068±0.00 0.298±0.00
ENST00000518783 0.396±0.00 N/A 0.037±0.00 4.590±0.00 0.064±0.02 0.142±0.00 0.060±0.00 0.086±0.00 0.058±0.00 N/A 0.127±0.00 0.073±0.06 0.021±0.01 0.155±0.00
ENST00000518862 N/A N/A N/A N/A 1.608±0.00 N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 N/A
ENST00000520353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242080 ENST00000467232 N/A N/A N/A N/A N/A N/A 0.156±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000242976 ENST00000476596 N/A N/A N/A 0.197±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000249484 ENST00000503048 N/A N/A N/A 0.067±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506723 0.055±0.00 0.028±0.00 0.156±0.00 0.100±0.00 0.011±0.00 0.007±0.00 0.031±0.01 0.060±0.00 0.007±0.00 0.036±0.00 0.042±0.00 0.022±0.02 0.086±0.00 0.022±0.00
ENST00000511419 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.874±0.00
ENST00000522300 N/A N/A N/A 0.096±0.00 N/A N/A 0.005±0.00 N/A N/A N/A N/A N/A N/A 0.318±0.00
ENST00000584829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.061±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020524 ENSMUST00000036315 0.859±0.10 N/A 1.290±0.07 9.024±7.06 0.636±0.00 N/A 0.108±0.04 0.090±0.00 0.024±0.01 2.301±0.44 N/A 0.341±0.18 0.111±0.06 0.112±0.04
ENSMUST00000094179 0.057±0.07 0.068±0.03 N/A 17.399±18.11 0.358±0.13 0.098±0.04 N/A 0.038±0.02 0.024±0.01 N/A 0.030±0.00 1.268±0.08 0.005±0.00 0.020±0.00
ENSMUST00000125292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151045 0.007±0.00 N/A 0.674±0.19 4.265±0.35 0.272±0.06 0.042±0.01 0.073±0.00 0.034±0.01 0.026±0.01 0.916±0.19 0.007±0.00 0.861±0.47 0.049±0.03 0.043±0.03
ENSMUST00000173531 N/A 0.212±0.09 N/A N/A 1.100±0.27 N/A N/A N/A N/A N/A N/A 2.794±0.00 N/A 0.468±0.00
ENSMUSG00000037393 ENSMUST00000037682 2.534±0.07 N/A 0.332±0.04 0.071±0.03 N/A 0.040±0.02 N/A 0.009±0.00 0.003±0.00 N/A N/A 1.847±1.02 0.007±0.00 0.009±0.00
ENSMUSG00000081749 ENSMUST00000118330 0.101±0.01 N/A N/A 0.196±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.162±1.88
ENSMUSG00000084169 ENSMUST00000120178 N/A 3.753±1.67 N/A 1.294±0.00 N/A N/A N/A N/A 0.210±0.00 2.000±0.00 1.270±0.33 N/A N/A 0.583±0.01
ENSMUSG00000086020 ENSMUST00000134285 N/A N/A N/A 0.391±0.16 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.081±0.00

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