C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001XJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000002587-ENSG00000157869 CGP 9606 4:11393150-13484365
GeneTranscriptPositionBiotype
ENSG00000002587 (HS3ST1)
heparan sulfate (glucosamine) 3-O-sulfotransferase 1 		ENST00000002596 (HS3ST1-001) 11393150-11429765 protein_coding
ENST00000510712 (HS3ST1-002) 11399758-11429564 protein_coding
ENST00000514690 (HS3ST1-003) 11399758-11428597 protein_coding
ENSG00000157869 (RAB28)
RAB28, member RAS oncogene family 		ENST00000288723 (RAB28-002) 13367724-13484365 protein_coding
ENST00000330852 (RAB28-001) 13367724-13484365 protein_coding
ENST00000338176 (RAB28-201) 13367725-13484365 protein_coding
ENST00000504644 (RAB28-008) 13368501-13381594 protein_coding
ENST00000508274 (RAB28-003) 13367724-13484331 nonsense_mediated_decay
ENST00000510528 (RAB28-005) 13459863-13474322 protein_coding
ENST00000511649 (RAB28-006) 13361354-13474345 protein_coding
ENSG00000205940 (HSP90AB2P)
heat shock protein 90kDa alpha (cytosolic), class B member 2, pseudogene 		ENST00000507090 (HSP90AB2P-002) 13336482-13338657 transcribed_processed_pseudogene
ENST00000602906 (HSP90AB2P-001) 13333414-13338302 processed_transcript
ENSG00000222182 (RNA5SP156)
RNA, 5S ribosomal pseudogene 156 		ENST00000410250 (RNA5SP156-201) 11414051-11414160 rRNA
ENSG00000248262 (RP11-1J7.1)
 ENST00000514103 (RP11-1J7.1-001) 11914667-11919688 lincRNA
ENSG00000248300 (RP11-74M11.2)
 ENST00000506195 (RP11-74M11.2-001) 11740948-11769468 lincRNA
ENSG00000249780 (RP11-352E6.2)
 ENST00000509155 (RP11-352E6.2-001) 12640298-12640637 processed_pseudogene
ENSG00000249995 (ECM1P2)
extracellular matrix protein 1 pseudogene 2 		ENST00000503354 (ECM1P2-001) 12639086-12641009 processed_pseudogene
ENSG00000250098 (RP11-22A3.1)
 ENST00000503163 (RP11-22A3.1-001) 12947574-12948670 lincRNA
ENSG00000250371 (RP11-22A3.2)
 ENST00000506899 (RP11-22A3.2-001) 12859101-12864961 lincRNA
ENSG00000251152 (RP11-281P23.1)
 ENST00000515343 (RP11-281P23.1-001) 11469250-11478196 lincRNA
ENSG00000251210 (RP11-168E17.1)
 ENST00000505386 (RP11-168E17.1-001) 12223482-12251286 lincRNA
ENST00000515691 (RP11-168E17.1-002) 12223451-12248107 lincRNA
ENSG00000266669 (AC097452.1)
 ENST00000582396 (AC097452.1-201) 12013347-12013441 miRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_0001XJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000051022-ENSMUSG00000029128 CGP 10090 5:39613935-41708155
GeneTranscriptPositionBiotype
ENSMUSG00000029128 (Rab28)
RAB28, member RAS oncogene family 		ENSMUST00000031011 (Rab28-201) 41624976-41708155 protein_coding
ENSMUSG00000051022 (Hs3st1)
heparan sulfate (glucosamine) 3-O-sulfotransferase 1 		ENSMUST00000053116 (Hs3st1-002) 39613939-39644634 protein_coding
ENSMUST00000117944 (Hs3st1-001) 39613935-39755475 protein_coding
ENSMUST00000137142 (Hs3st1-003) 39614769-39645246 protein_coding
ENSMUST00000152057 (Hs3st1-004) 39615074-39644597 protein_coding
ENSMUSG00000082938 (Gm2810)
predicted pseudogene 2810 		ENSMUST00000118681 (Gm2810-001) 40328438-40329427 processed_pseudogene
ENSMUSG00000083261 (Gm7816)
predicted pseudogene 7816 		ENSMUST00000119884 (Gm7816-001) 39798214-39799407 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001XJ_0001ENSG00000002587ENST00000002596ENST00000510712ENST00000514690ENSG00000157869ENST00000288723ENST00000330852ENST00000338176ENST00000504644ENST00000508274ENST00000510528ENST00000511649ENSG00000205940ENST00000507090ENST00000602906ENSG00000222182ENST00000410250ENSG00000248262ENST00000514103ENSG00000248300ENST00000506195ENSG00000249780ENST00000509155ENSG00000249995ENST00000503354ENSG00000250098ENST00000503163ENSG00000250371ENST00000506899ENSG00000251152ENST00000515343ENSG00000251210ENST00000505386ENST00000515691ENSG00000266669ENST00000582396CIL_0001XJ_0002ENSMUSG00000029128ENSMUST00000031011ENSMUSG00000051022ENSMUST00000053116ENSMUST00000117944ENSMUST00000137142ENSMUST00000152057ENSMUSG00000082938ENSMUST00000118681ENSMUSG00000083261ENSMUST00000119884
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001XJ_0001ENSG00000002587ENST00000002596ENST00000510712ENSG00000157869ENST00000288723ENST00000330852ENST00000508274ENST00000511649ENSG00000205940ENST00000507090ENST00000602906ENSG00000222182ENST00000410250ENSG00000248262ENST00000514103ENSG00000248300ENST00000506195ENSG00000249780ENST00000509155ENSG00000249995ENST00000503354ENSG00000250098ENST00000503163ENSG00000250371ENST00000506899ENSG00000251152ENST00000515343ENSG00000251210ENST00000505386ENST00000515691ENSG00000266669ENST00000582396CIL_0001XJ_0002ENSMUSG00000029128ENSMUST00000031011ENSMUSG00000051022ENSMUST00000053116ENSMUST00000117944ENSMUST00000137142ENSMUSG00000082938ENSMUST00000118681ENSMUSG00000083261ENSMUST00000119884
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000002587 ENST00000002596 0.069±0.00 0.953±0.00 0.036±0.00 0.279±0.00 0.139±0.00 0.082±0.00 0.168±0.00 0.480±0.39 0.040±0.00 0.682±0.00 0.060±0.00 3.632±2.65 0.264±0.02 0.958±0.00
ENST00000510712 0.802±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.561±0.00 N/A
ENST00000514690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000157869 ENST00000288723 1.595±0.00 N/A N/A 1.366±0.00 1.327±0.00 1.243±0.00 1.697±0.00 3.405±0.00 N/A 2.202±0.00 2.031±0.00 2.166±1.33 2.436±1.27 16.882±5.83
ENST00000330852 3.805±0.00 2.989±0.00 0.447±0.00 2.739±2.37 4.270±0.00 2.499±1.91 4.240±0.00 3.016±0.00 0.980±0.06 4.258±0.00 N/A 4.658±3.20 3.586±0.66 6.108±0.00
ENST00000338176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508274 N/A 1.800±0.00 N/A 1.239±0.00 N/A N/A 0.845±0.00 N/A 0.932±0.00 1.221±0.00 N/A 1.048±0.09 1.298±0.26 N/A
ENST00000510528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511649 N/A N/A N/A N/A N/A N/A N/A N/A 1.350±0.00 N/A N/A 1.192±0.00 N/A N/A
ENSG00000205940 ENST00000507090 N/A 0.153±0.00 0.387±0.00 N/A N/A N/A 0.139±0.00 N/A N/A N/A 0.034±0.00 0.066±0.01 N/A 0.204±0.00
ENST00000602906 1.729±0.00 1.590±0.00 N/A 4.754±0.00 2.376±0.00 6.175±0.00 2.935±0.00 1.658±1.64 0.709±0.00 2.497±0.00 0.032±0.00 0.661±0.50 0.070±0.03 4.197±0.00
ENSG00000222182 ENST00000410250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.846±0.00 N/A N/A
ENSG00000248262 ENST00000514103 N/A N/A N/A N/A N/A N/A 0.056±0.03 N/A N/A N/A N/A N/A N/A N/A
ENSG00000248300 ENST00000506195 0.070±0.00 0.073±0.00 N/A N/A N/A N/A N/A 0.072±0.00 0.225±0.00 0.016±0.00 N/A 0.497±0.40 N/A 0.049±0.02
ENSG00000249780 ENST00000509155 2.602±0.00 1.674±0.00 N/A 3.291±0.00 2.236±0.00 4.090±0.00 0.540±0.00 5.779±0.00 2.368±0.00 1.011±0.00 6.589±0.00 2.201±0.00 N/A 1.951±0.00
ENSG00000249995 ENST00000503354 N/A N/A 0.258±0.00 N/A N/A N/A N/A N/A 0.126±0.00 0.098±0.00 N/A N/A N/A N/A
ENSG00000250098 ENST00000503163 0.036±0.00 0.034±0.00 N/A N/A N/A N/A 0.096±0.00 N/A 0.029±0.00 N/A N/A N/A N/A 0.157±0.00
ENSG00000250371 ENST00000506899 0.020±0.00 0.023±0.00 N/A N/A 0.066±0.00 0.085±0.00 0.056±0.01 N/A 0.025±0.02 0.022±0.00 N/A 0.010±0.00 0.010±0.00 0.030±0.00
ENSG00000251152 ENST00000515343 0.049±0.00 0.255±0.00 0.021±0.00 0.144±0.02 0.096±0.03 0.041±0.03 0.052±0.00 0.034±0.03 0.024±0.01 0.071±0.03 0.038±0.00 0.025±0.01 0.011±0.00 0.119±0.02
ENSG00000251210 ENST00000505386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.735±0.00
ENST00000515691 0.077±0.00 0.215±0.00 N/A N/A 0.211±0.00 0.074±0.00 0.232±0.16 0.133±0.00 N/A 0.095±0.00 0.023±0.00 N/A N/A N/A
ENSG00000266669 ENST00000582396 N/A 0.347±0.00 N/A 0.164±0.00 0.157±0.00 N/A N/A 0.960±0.00 1.662±0.00 N/A N/A N/A N/A 0.790±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029128 ENSMUST00000031011 14.510±4.95 67.852±33.67 21.846±2.30 15.607±6.15 17.738±6.57 26.928±3.34 4.998±1.30 16.404±2.90 8.243±1.56 29.733±4.82 5.998±0.78 19.674±6.98 7.178±2.57 21.178±6.20
ENSMUSG00000051022 ENSMUST00000053116 3.541±0.73 7.314±0.43 9.741±1.22 7.434±3.04 3.949±1.17 7.824±0.99 1.179±0.41 1.473±0.56 0.161±0.05 16.614±3.71 0.518±0.13 28.709±6.94 15.791±8.49 0.316±0.15
ENSMUST00000117944 N/A N/A N/A N/A N/A N/A 2.642±1.01 N/A 0.146±0.12 N/A N/A N/A N/A 0.107±0.08
ENSMUST00000137142 1.341±0.00 N/A N/A 5.521±1.82 1.053±0.00 N/A N/A N/A 0.127±0.06 N/A N/A N/A N/A 0.210±0.00
ENSMUST00000152057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082938 ENSMUST00000118681 0.183±0.05 0.175±0.13 0.176±0.09 0.436±0.48 0.342±0.35 0.289±0.13 0.088±0.02 0.291±0.12 0.565±0.70 0.162±0.05 0.038±0.01 0.446±0.26 0.033±0.02 1.189±0.63
ENSMUSG00000083261 ENSMUST00000119884 0.556±0.17 0.292±0.09 0.607±0.37 2.305±1.67 0.281±0.21 0.302±0.36 0.125±0.06 0.374±0.12 0.986±0.77 0.246±0.04 0.047±0.02 0.504±0.43 0.377±0.42 0.575±0.08

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