C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001XR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000124207-ENSG00000124214 CGP 9606 20:49046246-49188367
GeneTranscriptPositionBiotype
ENSG00000124207 (CSE1L)
CSE1 chromosome segregation 1-like (yeast) 		ENST00000262982 (CSE1L-001) 49046312-49096952 protein_coding
ENST00000396192 (CSE1L-201) 49046246-49096960 protein_coding
ENST00000469700 (CSE1L-002) 49090763-49096952 processed_transcript
ENSG00000124214 (STAU1)
staufen double-stranded RNA binding protein 1 		ENST00000340954 (STAU1-004) 49113523-49188367 protein_coding
ENST00000347458 (STAU1-003) 49113523-49188367 protein_coding
ENST00000360426 (STAU1-002) 49113523-49188367 protein_coding
ENST00000371792 (STAU1-007) 49113523-49188367 protein_coding
ENST00000371802 (STAU1-006) 49113523-49188367 protein_coding
ENST00000371828 (STAU1-201) 49113341-49188367 protein_coding
ENST00000371856 (STAU1-001) 49113339-49188367 protein_coding
ENST00000437404 (STAU1-005) 49124375-49188367 protein_coding
ENST00000456866 (STAU1-008) 49151582-49174263 protein_coding
ENST00000614381 (STAU1-202) 49113341-49154068 protein_coding
ENSG00000226284 (ARPC3P1)
actin related protein 2/3 complex, subunit 3 pseudogene 1 		ENST00000437218 (ARPC3P1-001) 49134480-49135012 processed_pseudogene
CIL_0001XR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000002718-ENSMUSG00000039536 CGP 10090 2:166906040-166996299
GeneTranscriptPositionBiotype
ENSMUSG00000002718 (Cse1l)
chromosome segregation 1-like (S. cerevisiae) 		ENSMUST00000002790 (Cse1l-001) 166906059-166946389 protein_coding
ENSMUST00000129061 (Cse1l-005) 166940833-166941819 retained_intron
ENSMUST00000132402 (Cse1l-004) 166927565-166932403 retained_intron
ENSMUST00000135139 (Cse1l-003) 166927724-166935087 retained_intron
ENSMUST00000145819 (Cse1l-002) 166934755-166944853 retained_intron
ENSMUST00000163437 (Cse1l-008) 166927530-166945808 protein_coding
ENSMUST00000163917 (Cse1l-009) 166937093-166941250 retained_intron
ENSMUST00000164974 (Cse1l-012) 166934782-166941454 nonsense_mediated_decay
ENSMUST00000166871 (Cse1l-011) 166927768-166937421 processed_transcript
ENSMUST00000168599 (Cse1l-007) 166915180-166945793 protein_coding
ENSMUST00000169290 (Cse1l-006) 166906111-166946101 nonsense_mediated_decay
ENSMUST00000171410 (Cse1l-010) 166906040-166944550 processed_transcript
ENSMUSG00000039536 (Stau1)
staufen (RNA binding protein) homolog 1 (Drosophila) 		ENSMUST00000049412 (Stau1-005) 166948147-166996103 protein_coding
ENSMUST00000109235 (Stau1-001) 166947549-166996278 protein_coding
ENSMUST00000109236 (Stau1-002) 166948273-166996299 protein_coding
ENSMUST00000109238 (Stau1-003) 166948147-166996265 protein_coding
ENSMUST00000130104 (Stau1-007) 166963507-166976771 processed_transcript
ENSMUST00000130790 (Stau1-011) 166952907-166963441 retained_intron
ENSMUST00000134664 (Stau1-009) 166949694-166950956 retained_intron
ENSMUST00000142481 (Stau1-006) 166948147-166955384 retained_intron
ENSMUST00000149454 (Stau1-008) 166949246-166951231 retained_intron
ENSMUST00000154506 (Stau1-010) 166952304-166960322 retained_intron
ENSMUST00000184390 (Stau1-004) 166949292-166964716 nonsense_mediated_decay
ENSMUSG00000090397 (Gm17096)
predicted gene 17096 		ENSMUST00000172037 (Gm17096-001) 166943539-166944308 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001XR_0001ENSG00000124207ENST00000262982ENST00000396192ENST00000469700ENSG00000124214ENST00000340954ENST00000347458ENST00000360426ENST00000371792ENST00000371802ENST00000371828ENST00000371856ENST00000437404ENST00000456866ENST00000614381ENSG00000226284ENST00000437218CIL_0001XR_0002ENSMUSG00000002718ENSMUST00000002790ENSMUST00000129061ENSMUST00000132402ENSMUST00000135139ENSMUST00000145819ENSMUST00000163437ENSMUST00000163917ENSMUST00000164974ENSMUST00000166871ENSMUST00000168599ENSMUST00000169290ENSMUST00000171410ENSMUSG00000039536ENSMUST00000049412ENSMUST00000109235ENSMUST00000109236ENSMUST00000109238ENSMUST00000130104ENSMUST00000130790ENSMUST00000134664ENSMUST00000142481ENSMUST00000149454ENSMUST00000154506ENSMUST00000184390ENSMUSG00000090397ENSMUST00000172037
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001XR_0001ENSG00000124207ENST00000262982ENST00000396192ENST00000469700ENSG00000124214ENST00000340954ENST00000347458ENST00000360426ENST00000371792ENST00000371802ENST00000371828ENST00000371856ENST00000614381ENSG00000226284ENST00000437218CIL_0001XR_0002ENSMUSG00000002718ENSMUST00000002790ENSMUST00000132402ENSMUST00000168599ENSMUST00000169290ENSMUST00000171410ENSMUSG00000039536ENSMUST00000049412ENSMUST00000109235ENSMUST00000109236ENSMUST00000109238ENSMUST00000130790ENSMUST00000142481ENSMUST00000149454ENSMUST00000184390ENSMUSG00000090397ENSMUST00000172037
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124207 ENST00000262982 10.985±0.00 10.390±0.00 5.465±0.00 13.786±2.15 8.228±0.00 9.777±4.08 6.947±4.27 9.361±3.71 3.996±0.00 6.960±2.17 10.292±6.20 16.671±1.87 12.495±1.44 47.756±7.15
ENST00000396192 N/A N/A N/A N/A N/A N/A 0.813±0.00 N/A 2.001±0.00 N/A N/A 18.960±0.00 12.738±0.00 49.431±0.00
ENST00000469700 N/A 4.456±0.00 N/A N/A N/A N/A N/A 4.411±0.00 2.716±0.00 N/A N/A 22.432±15.88 12.736±0.00 N/A
ENSG00000124214 ENST00000340954 N/A N/A N/A N/A N/A 1.576±0.00 N/A N/A N/A N/A N/A N/A 4.589±0.00 4.363±0.00
ENST00000347458 19.066±0.00 9.421±0.00 1.791±0.00 11.044±0.00 15.807±0.00 N/A N/A 9.489±0.00 10.688±0.00 11.351±0.00 N/A 8.493±0.00 N/A 5.736±0.00
ENST00000360426 13.290±0.00 6.205±0.00 N/A 8.726±0.00 N/A 15.226±0.00 4.459±3.48 7.099±2.17 5.185±2.42 5.750±3.63 6.486±4.70 8.729±5.41 14.302±2.39 10.822±0.01
ENST00000371792 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.604±0.00 0.832±0.00 3.224±0.00 N/A N/A
ENST00000371802 N/A N/A N/A N/A N/A 5.428±3.35 6.036±0.00 N/A N/A N/A N/A N/A N/A 6.899±0.00
ENST00000371828 9.959±0.00 5.350±0.00 1.456±0.00 3.087±1.38 5.774±0.00 N/A N/A N/A 4.919±0.00 6.763±0.00 N/A 7.616±2.58 6.363±0.22 N/A
ENST00000371856 N/A N/A 1.276±0.00 5.220±2.15 N/A 5.062±0.00 4.830±3.64 N/A N/A 2.730±1.53 5.885±0.00 N/A N/A 4.071±0.75
ENST00000437404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614381 N/A 6.374±0.00 1.385±0.00 6.041±0.00 11.622±4.76 8.213±1.49 2.566±0.00 13.943±2.04 10.795±0.87 4.671±0.00 3.261±1.13 13.311±7.17 12.199±2.50 12.236±0.00
ENSG00000226284 ENST00000437218 N/A 0.372±0.00 1.188±0.00 N/A 0.172±0.00 N/A 0.078±0.00 N/A 0.276±0.00 0.285±0.00 0.038±0.00 0.159±0.05 N/A 0.036±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000002718 ENSMUST00000002790 11.369±3.23 22.150±3.63 12.726±2.00 27.021±1.55 9.201±1.46 5.403±1.99 9.302±0.67 9.364±1.83 15.332±9.90 8.357±1.40 17.150±1.09 10.227±6.61 25.464±17.16 11.122±4.63
ENSMUST00000129061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.932±0.00
ENSMUST00000135139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163917 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168599 N/A N/A N/A 2.360±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169290 2.665±0.54 N/A N/A 2.320±0.00 3.218±1.16 1.556±0.41 1.314±0.00 1.994±0.06 2.028±0.00 3.083±0.17 N/A 4.925±2.24 2.413±0.00 2.382±0.63
ENSMUST00000171410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.777±0.00 13.050±0.00 9.920±0.00
ENSMUSG00000039536 ENSMUST00000049412 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.250±0.06 8.692±0.13 9.364±4.03 N/A
ENSMUST00000109235 1.891±0.32 N/A 4.090±0.16 7.834±0.59 1.943±0.31 2.006±0.19 1.928±0.10 2.309±0.60 2.286±0.49 1.910±0.04 2.692±0.78 4.368±1.88 5.062±1.25 1.221±0.22
ENSMUST00000109236 4.799±0.85 19.108±7.49 4.082±0.72 8.468±5.04 5.770±1.29 6.158±2.19 2.767±1.04 5.823±0.65 4.722±1.95 4.323±1.18 2.983±0.77 7.789±3.23 17.594±12.24 4.873±1.70
ENSMUST00000109238 4.982±0.23 8.966±0.00 8.643±0.16 9.306±0.72 2.646±0.00 3.369±0.17 2.429±0.45 3.143±0.77 4.423±1.33 3.590±0.82 4.636±0.40 6.457±3.33 14.449±5.52 2.544±0.24
ENSMUST00000130104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 79.008±0.00 15.299±0.00
ENSMUST00000134664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142481 2.447±1.15 N/A 2.874±0.37 5.350±0.03 2.360±0.25 1.958±0.23 1.284±0.13 1.424±0.04 2.007±0.37 2.312±0.21 N/A 3.405±0.90 2.843±0.09 1.549±0.09
ENSMUST00000149454 7.299±0.42 N/A N/A N/A 7.161±0.00 N/A N/A N/A N/A N/A N/A 8.926±1.31 N/A N/A
ENSMUST00000154506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184390 N/A N/A N/A 11.268±0.00 N/A N/A N/A N/A N/A N/A N/A 18.291±0.00 N/A 6.555±0.00
ENSMUSG00000090397 ENSMUST00000172037 0.647±0.45 1.031±0.32 0.786±0.16 1.716±0.57 0.987±0.26 0.493±0.25 0.185±0.08 0.287±0.08 0.538±0.38 0.619±0.04 0.170±0.10 1.346±0.45 0.640±0.29 0.617±0.25

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