C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001YG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000064419-ENSG00000158457 CGP 9606 7:128954180-129169697
GeneTranscriptPositionBiotype
ENSG00000064419 (TNPO3)
transportin 3 		ENST00000265388 (TNPO3-001) 128954180-129054914 protein_coding
ENST00000471166 (TNPO3-005) 128957223-129054883 protein_coding
ENST00000471234 (TNPO3-003) 128955088-129055144 protein_coding
ENST00000482320 (TNPO3-002) 128955088-129055093 protein_coding
ENSG00000158457 (TSPAN33)
tetraspanin 33 		ENST00000486685 (TSPAN33-001) 129144892-129168796 protein_coding
ENST00000496963 (TSPAN33-003) 129162450-129164810 retained_intron
ENST00000498745 (TSPAN33-004) 129168212-129169697 processed_transcript
ENST00000614309 (TSPAN33-002) 129166440-129168830 retained_intron
ENSG00000200629 (RNY1P11)
RNA, Ro-associated Y1 pseudogene 11 		ENST00000363759 (RNY1P11-201) 129164849-129164961 misc_RNA
ENSG00000230359 (TPI1P2)
triosephosphate isomerase 1 pseudogene 2 		ENST00000491343 (TPI1P2-001) 129056019-129056770 processed_pseudogene
ENSG00000230626 (RP11-286H14.4)
 ENST00000467614 (RP11-286H14.4-001) 129126518-129127717 transcribed_processed_pseudogene
ENST00000471777 (RP11-286H14.4-002) 129127405-129130793 processed_transcript
ENSG00000240416 (CYCSP20)
cytochrome c, somatic pseudogene 20 		ENST00000473154 (CYCSP20-001) 129117513-129117827 processed_pseudogene
ENSG00000241573 (RP11-286H14.1)
 ENST00000491624 (RP11-286H14.1-001) 129096027-129096735 processed_pseudogene
ENSG00000242241 (RN7SL306P)
RNA, 7SL, cytoplasmic 306, pseudogene 		ENST00000492941 (RN7SL306P-201) 128970734-128971029 misc_RNA
ENSG00000244556 (ODCP)
ornithine decarboxylase pseudogene 		ENST00000459650 (ODCP-001) 129028889-129030527 processed_pseudogene
CIL_0001YG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000012535-ENSMUSG00000001763 CGP 10090 6:29540827-29718559
GeneTranscriptPositionBiotype
ENSMUSG00000001763 (Tspan33)
tetraspanin 33 		ENSMUST00000046750 (Tspan33-001) 29694222-29718559 protein_coding
ENSMUST00000115250 (Tspan33-002) 29694234-29718557 protein_coding
ENSMUST00000137925 (Tspan33-003) 29708028-29714822 retained_intron
ENSMUSG00000012535 (Tnpo3)
transportin 3 		ENSMUST00000012679 (Tnpo3-001) 29540827-29609887 protein_coding
ENSMUST00000115251 (Tnpo3-201) 29540827-29609607 protein_coding
ENSMUST00000164325 (Tnpo3-008) 29583343-29609634 retained_intron
ENSMUST00000166844 (Tnpo3-003) 29589088-29609613 nonsense_mediated_decay
ENSMUST00000167056 (Tnpo3-004) 29578552-29582386 retained_intron
ENSMUST00000169302 (Tnpo3-007) 29564877-29609623 retained_intron
ENSMUST00000170350 (Tnpo3-002) 29541571-29609811 nonsense_mediated_decay
ENSMUST00000170634 (Tnpo3-009) 29580053-29609819 retained_intron
ENSMUST00000170647 (Tnpo3-005) 29540982-29560094 protein_coding
ENSMUST00000171865 (Tnpo3-006) 29554883-29557065 retained_intron
ENSMUSG00000029771 (Irf5)
interferon regulatory factor 5 		ENSMUST00000004392 (Irf5-001) 29526625-29537319 protein_coding
ENSMUST00000163511 (Irf5-003) 29529282-29537319 protein_coding
ENSMUST00000164626 (Irf5-002) 29528270-29533997 protein_coding
ENSMUST00000164922 (Irf5-006) 29531248-29535346 processed_transcript
ENSMUST00000167252 (Irf5-004) 29535890-29541869 protein_coding
ENSMUST00000171527 (Irf5-005) 29541146-29541858 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001YG_0001ENSG00000064419ENST00000265388ENST00000471166ENST00000471234ENST00000482320ENSG00000158457ENST00000486685ENST00000496963ENST00000498745ENST00000614309ENSG00000200629ENST00000363759ENSG00000230359ENST00000491343ENSG00000230626ENST00000467614ENST00000471777ENSG00000240416ENST00000473154ENSG00000241573ENST00000491624ENSG00000242241ENST00000492941ENSG00000244556ENST00000459650CIL_0001YG_0002ENSMUSG00000001763ENSMUST00000046750ENSMUST00000115250ENSMUST00000137925ENSMUSG00000012535ENSMUST00000012679ENSMUST00000115251ENSMUST00000164325ENSMUST00000166844ENSMUST00000167056ENSMUST00000169302ENSMUST00000170350ENSMUST00000170634ENSMUST00000170647ENSMUST00000171865ENSMUSG00000029771ENSMUST00000004392ENSMUST00000163511ENSMUST00000164626ENSMUST00000164922ENSMUST00000167252ENSMUST00000171527
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001YG_0001ENSG00000064419ENST00000265388ENST00000471166ENST00000471234ENSG00000158457ENST00000486685ENST00000496963ENST00000498745ENST00000614309ENSG00000200629ENST00000363759ENSG00000230359ENST00000491343ENSG00000230626ENST00000467614ENST00000471777ENSG00000240416ENST00000473154ENSG00000241573ENST00000491624ENSG00000242241ENST00000492941ENSG00000244556ENST00000459650CIL_0001YG_0002ENSMUSG00000001763ENSMUST00000046750ENSMUST00000115250ENSMUST00000137925ENSMUSG00000012535ENSMUST00000012679ENSMUST00000115251ENSMUST00000166844ENSMUST00000170350ENSMUST00000170647ENSMUSG00000029771ENSMUST00000004392ENSMUST00000163511
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000064419 ENST00000265388 10.270±0.00 8.768±0.00 N/A 4.354±3.49 9.092±0.00 5.528±4.77 4.755±3.26 7.572±5.29 5.598±0.40 3.770±0.70 9.655±7.85 9.167±4.01 6.620±0.22 14.525±2.46
ENST00000471166 N/A N/A N/A 1.606±0.00 2.063±0.00 N/A 1.221±0.00 N/A N/A N/A 2.484±0.00 4.543±0.00 2.830±0.00 N/A
ENST00000471234 N/A N/A 2.095±0.00 N/A 3.621±0.00 N/A N/A N/A N/A 1.059±0.00 N/A 8.502±0.00 3.977±0.00 18.528±0.00
ENST00000482320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000158457 ENST00000486685 2.207±0.00 17.479±0.00 8.981±0.00 5.159±4.78 8.314±0.00 2.406±1.11 1.761±0.78 35.022±33.24 7.119±5.30 2.273±1.95 1.581±0.00 2.576±0.78 7.971±3.57 19.078±14.26
ENST00000496963 N/A N/A N/A N/A N/A 0.723±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.368±0.00 N/A N/A N/A
ENST00000614309 N/A 3.606±0.00 1.697±0.00 0.738±0.46 0.451±0.00 N/A 0.601±0.00 9.542±0.00 2.140±0.00 1.043±0.21 0.485±0.07 0.527±0.02 1.133±0.00 N/A
ENSG00000200629 ENST00000363759 N/A 0.516±0.00 N/A N/A N/A N/A N/A N/A N/A 10.637±0.00 N/A N/A N/A 0.611±0.00
ENSG00000230359 ENST00000491343 0.184±0.00 0.483±0.00 0.286±0.00 0.494±0.34 0.581±0.00 0.027±0.00 0.215±0.00 0.180±0.00 0.091±0.02 N/A 0.025±0.00 0.168±0.08 0.159±0.08 1.001±0.24
ENSG00000230626 ENST00000467614 0.168±0.00 0.093±0.00 N/A 0.281±0.00 0.130±0.00 0.236±0.00 0.154±0.00 0.026±0.00 0.066±0.00 0.074±0.00 0.245±0.00 0.092±0.00 0.195±0.00 2.820±1.46
ENST00000471777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.749±0.00
ENSG00000240416 ENST00000473154 N/A N/A N/A N/A N/A N/A N/A 0.053±0.00 N/A N/A N/A N/A N/A 1.005±0.00
ENSG00000241573 ENST00000491624 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.083±0.00
ENSG00000242241 ENST00000492941 N/A N/A N/A 0.214±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000244556 ENST00000459650 0.022±0.00 N/A 0.516±0.00 0.049±0.00 1.149±0.00 0.844±0.00 0.048±0.00 0.090±0.00 0.074±0.05 N/A 0.301±0.00 0.252±0.37 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001763 ENSMUST00000046750 0.963±0.37 0.707±0.23 0.560±0.23 2.579±1.02 0.988±0.37 13.559±1.28 0.561±0.29 9.203±3.23 30.092±32.18 1.012±0.05 0.801±0.24 2.196±0.61 7.894±2.21 3.568±0.23
ENSMUST00000115250 0.626±0.07 0.531±0.46 0.473±0.19 2.777±2.69 1.754±0.58 3.996±0.62 0.509±0.36 5.768±1.07 14.663±15.28 0.330±0.10 0.470±0.14 1.835±0.89 4.881±1.64 1.488±0.35
ENSMUST00000137925 N/A N/A N/A 0.274±0.08 0.232±0.02 N/A N/A N/A N/A N/A 0.058±0.01 0.100±0.00 N/A N/A
ENSMUSG00000012535 ENSMUST00000012679 12.347±2.11 3.201±0.00 21.090±1.80 11.661±4.42 10.461±2.45 10.158±0.61 7.790±2.01 11.699±2.03 11.756±6.45 10.860±1.08 10.178±2.54 7.578±2.74 14.147±6.78 9.772±3.43
ENSMUST00000115251 N/A 5.918±0.97 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.865±3.15 N/A N/A
ENSMUST00000164325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166844 N/A 34.790±8.01 N/A N/A N/A 20.250±0.00 N/A N/A N/A N/A N/A 32.599±5.53 N/A N/A
ENSMUST00000167056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169302 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170350 5.380±1.53 4.780±1.41 N/A 6.566±2.11 6.690±2.69 3.824±0.90 4.000±1.35 3.756±0.00 N/A 5.915±0.75 3.400±0.09 7.818±2.72 9.864±4.41 2.403±0.63
ENSMUST00000170634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.917±0.00 N/A
ENSMUST00000171865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029771 ENSMUST00000004392 9.645±1.01 4.710±1.64 11.742±1.48 N/A 16.431±3.68 3.438±0.44 2.847±0.11 7.772±0.97 11.354±3.99 12.846±1.18 N/A 6.466±1.71 N/A N/A
ENSMUST00000163511 N/A 3.392±0.89 N/A N/A 8.345±0.00 4.087±0.80 N/A N/A 6.977±3.18 5.339±0.11 N/A 5.498±1.78 N/A N/A
ENSMUST00000164626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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