C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001ZB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000213186-ENSG00000186432 CGP 9606 3:160432445-160565588
GeneTranscriptPositionBiotype
ENSG00000186432 (KPNA4)
karyopherin alpha 4 (importin alpha 3) 		ENST00000334256 (KPNA4-001) 160494995-160565588 protein_coding
ENST00000469804 (KPNA4-002) 160564209-160565571 processed_transcript
ENST00000483437 (KPNA4-003) 160504958-160521796 protein_coding
ENSG00000213186 (TRIM59)
tripartite motif containing 59 		ENST00000309784 (TRIM59-001) 160435503-160449829 protein_coding
ENST00000468542 (TRIM59-009) 160439001-160485773 protein_coding
ENST00000471155 (TRIM59-004) 160438841-160449765 protein_coding
ENST00000471396 (TRIM59-005) 160438719-160449763 protein_coding
ENST00000479460 (TRIM59-007) 160438651-160449725 protein_coding
ENST00000494486 (TRIM59-008) 160438849-160449613 protein_coding
ENST00000496222 (TRIM59-006) 160438731-160449760 protein_coding
ENST00000543469 (TRIM59-201) 160432445-160448937 protein_coding
ENSG00000238741 (SCARNA7)
small Cajal body-specific RNA 7 		ENST00000458797 (SCARNA7-201) 160514907-160515236 snoRNA
ENSG00000244009 (B3GAT3P1)
beta-1,3-glucuronyltransferase 3 pseudogene 1 		ENST00000471720 (B3GAT3P1-001) 160452598-160453403 processed_pseudogene
ENSG00000248710 (RP11-432B6.3)
Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000456272} 		ENST00000483754 (RP11-432B6.3-001) 160227454-160449829 nonsense_mediated_decay

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_0001ZB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034317-ENSMUSG00000027782 CGP 10090 3:69035288-69127113
GeneTranscriptPositionBiotype
ENSMUSG00000027782 (Kpna4)
karyopherin (importin) alpha 4 		ENSMUST00000029353 (Kpna4-001) 69067149-69127113 protein_coding
ENSMUST00000127497 (Kpna4-002) 69094715-69126630 protein_coding
ENSMUSG00000034317 (Trim59)
tripartite motif-containing 59 		ENSMUST00000107802 (Trim59-001) 69035288-69044755 protein_coding
ENSMUST00000136512 (Trim59-002) 69036837-69044715 protein_coding
ENSMUST00000142560 (Trim59-005) 69043562-69044715 retained_intron
ENSMUST00000143454 (Trim59-004) 69037841-69044715 protein_coding
ENSMUST00000153259 (Trim59-003) 69043789-69044723 processed_transcript
ENSMUSG00000089417 (Gm22009)
predicted gene, 22009 		ENSMUST00000158792 (Gm22009-201) 69085105-69085447 snoRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001ZB_0001ENSG00000186432ENST00000334256ENST00000469804ENST00000483437ENSG00000213186ENST00000309784ENST00000468542ENST00000471155ENST00000471396ENST00000479460ENST00000494486ENST00000496222ENST00000543469ENSG00000238741ENST00000458797ENSG00000244009ENST00000471720ENSG00000248710ENST00000483754CIL_0001ZB_0002ENSMUSG00000027782ENSMUST00000029353ENSMUST00000127497ENSMUSG00000034317ENSMUST00000107802ENSMUST00000136512ENSMUST00000142560ENSMUST00000143454ENSMUST00000153259ENSMUSG00000089417ENSMUST00000158792
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001ZB_0001ENSG00000186432ENST00000334256ENST00000483437ENSG00000213186ENST00000309784ENST00000543469ENSG00000238741ENST00000458797ENSG00000244009ENST00000471720ENSG00000248710ENST00000483754CIL_0001ZB_0002ENSMUSG00000027782ENSMUST00000029353ENSMUSG00000034317ENSMUST00000107802ENSMUST00000136512ENSMUST00000142560ENSMUST00000143454ENSMUST00000153259ENSMUSG00000089417ENSMUST00000158792
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000186432 ENST00000334256 10.477±0.00 5.700±0.00 2.103±0.00 6.140±1.64 8.388±1.86 6.918±2.10 9.085±5.24 4.153±2.72 6.165±3.43 7.022±0.70 18.303±10.66 6.612±1.70 6.486±2.95 13.659±1.74
ENST00000469804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.916±0.00 35.172±0.00 60.899±0.00
ENSG00000213186 ENST00000309784 N/A N/A N/A 2.812±0.64 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471396 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494486 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543469 0.888±0.00 N/A N/A N/A 1.072±0.00 1.295±0.00 1.010±0.00 1.834±0.00 0.729±0.00 1.826±0.00 0.538±0.00 N/A N/A 3.290±0.00
ENSG00000238741 ENST00000458797 3.684±0.00 3.614±0.00 117.880±0.00 68.533±59.15 120.824±117.89 111.406±107.29 80.213±78.33 72.979±71.06 451.333±0.00 241.980±0.00 71.991±70.04 140.689±222.21 10.246±13.74 4.155±1.00
ENSG00000244009 ENST00000471720 N/A N/A N/A 0.083±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.096±0.00 0.468±0.21
ENSG00000248710 ENST00000483754 N/A N/A N/A 2.916±0.38 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027782 ENSMUST00000029353 6.093±0.79 8.377±1.24 8.337±0.43 6.722±1.46 6.126±2.50 5.160±0.65 3.581±0.22 4.256±0.57 4.420±0.84 7.821±0.60 14.040±0.80 6.268±2.03 9.834±1.85 8.884±2.70
ENSMUST00000127497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000034317 ENSMUST00000107802 0.812±0.61 0.256±0.11 0.991±0.07 5.762±3.62 0.843±0.51 0.535±0.24 0.101±0.05 0.251±0.11 14.824±15.67 0.312±0.15 0.130±0.19 1.884±1.41 3.833±2.18 2.840±1.10
ENSMUST00000136512 N/A 0.190±0.07 N/A N/A 0.354±0.01 0.165±0.07 0.028±0.00 0.034±0.00 0.038±0.00 0.146±0.00 N/A 0.477±0.22 N/A 3.359±0.00
ENSMUST00000142560 N/A N/A N/A N/A N/A N/A N/A 0.208±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000143454 N/A N/A N/A N/A N/A 0.270±0.00 N/A N/A 0.078±0.00 N/A N/A 0.866±0.42 N/A N/A
ENSMUST00000153259 N/A 0.347±0.17 N/A N/A 0.425±0.04 0.241±0.03 N/A 0.148±0.00 N/A 0.088±0.00 N/A 1.738±0.75 N/A N/A
ENSMUSG00000089417 ENSMUST00000158792 144.766±55.33 61.854±10.83 268.728±55.19 146.141±111.59 116.148±42.81 75.429±20.84 63.291±11.77 74.676±9.94 91.401±34.30 176.732±39.31 2.599±1.00 153.888±124.03 88.711±117.91 65.687±27.22

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