C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00020P_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000155754-ENSG00000155755 CGP 9606 2:201487425-201643570
GeneTranscriptPositionBiotype
ENSG00000155754 (ALS2CR11)
amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11 		ENST00000286195 (ALS2CR11-001) 201487425-201619175 protein_coding
ENST00000439140 (ALS2CR11-003) 201487608-201619175 protein_coding
ENST00000439802 (ALS2CR11-002) 201487525-201619154 protein_coding
ENST00000450242 (ALS2CR11-005) 201535004-201619178 protein_coding
ENST00000482942 (ALS2CR11-006) 201487801-201511827 processed_transcript
ENSG00000155755 (TMEM237)
transmembrane protein 237 		ENST00000286196 (TMEM237-008) 201623756-201643484 nonsense_mediated_decay
ENST00000409444 (TMEM237-002) 201620184-201642944 protein_coding
ENST00000409883 (TMEM237-001) 201620184-201643517 protein_coding
ENST00000432684 (TMEM237-003) 201629288-201643570 nonsense_mediated_decay
ENST00000444047 (TMEM237-012) 201629730-201643402 nonsense_mediated_decay
ENST00000463205 (TMEM237-010) 201638451-201642653 retained_intron
ENST00000466641 (TMEM237-006) 201627360-201633403 processed_transcript
ENST00000466839 (TMEM237-013) 201627387-201631375 processed_transcript
ENST00000471318 (TMEM237-016) 201623882-201629420 processed_transcript
ENST00000480124 (TMEM237-014) 201636170-201639031 retained_intron
ENST00000489550 (TMEM237-011) 201632149-201643418 processed_transcript
ENST00000495329 (TMEM237-007) 201620186-201626323 retained_intron
ENST00000621467 (TMEM237-201) 201623700-201642692 protein_coding
ENSG00000224299 (AC007282.6)
 ENST00000434543 (AC007282.6-001) 201550524-201551049 unprocessed_pseudogene
ENSG00000224590 (AC007163.10)
 ENST00000452205 (AC007163.10-001) 201553688-201554031 unprocessed_pseudogene
ENSG00000227736 (AC007163.9)
 ENST00000454456 (AC007163.9-001) 201552859-201553612 unprocessed_pseudogene
ENSG00000227841 (MTND5P31)
MT-ND5 pseudogene 31 		ENST00000419366 (MTND5P31-001) 201556892-201558265 unprocessed_pseudogene
ENSG00000234842 (AC007163.8)
 ENST00000436962 (AC007163.8-001) 201549631-201550307 unprocessed_pseudogene
ENSG00000241790 (ENO1P4)
enolase 1, (alpha) pseudogene 4 		ENST00000416471 (ENO1P4-001) 201621646-201623430 processed_pseudogene
ENSG00000249177 (MTND4P29)
MT-ND4 pseudogene 29 		ENST00000503122 (MTND4P29-001) 201554384-201556051 unprocessed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_00020P_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000072295-ENSMUSG00000038079 CGP 10090 1:59050506-59120408
GeneTranscriptPositionBiotype
ENSMUSG00000038079 (Tmem237)
transmembrane protein 237 		ENSMUST00000087475 (Tmem237-003) 59100597-59119806 protein_coding
ENSMUST00000094917 (Tmem237-001) 59100590-59120094 protein_coding
ENSMUST00000185951 (Tmem237-006) 59108784-59114316 retained_intron
ENSMUST00000186395 (Tmem237-005) 59109090-59120408 protein_coding
ENSMUST00000186794 (Tmem237-002) 59100911-59120382 protein_coding
ENSMUST00000186820 (Tmem237-007) 59109871-59115958 retained_intron
ENSMUST00000190014 (Tmem237-004) 59108195-59120112 protein_coding
ENSMUSG00000072295 (Als2cr11)
amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11 (human) 		ENSMUST00000097080 (Als2cr11-001) 59050506-59094900 protein_coding
ENSMUST00000149784 (Als2cr11-002) 59069820-59084523 processed_transcript
ENSMUSG00000097573 (G730003C15Rik)
RIKEN cDNA G730003C15 gene 		ENSMUST00000180570 (G730003C15Rik-201) 59119833-59122139 antisense
ENSMUST00000189096 (G730003C15Rik-001) 59119833-59122141 antisense
ENSMUSG00000099752 (RP24-535E21.1)
predicted gene 29018 		ENSMUST00000188707 (RP24-535E21.1-001) 59014224-59059481 antisense
ENSMUST00000191356 (RP24-535E21.1-002) 59036055-59037906 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00020P_0001ENSG00000155754ENST00000286195ENST00000439140ENST00000439802ENST00000450242ENST00000482942ENSG00000155755ENST00000286196ENST00000409444ENST00000409883ENST00000432684ENST00000444047ENST00000463205ENST00000466641ENST00000466839ENST00000471318ENST00000480124ENST00000489550ENST00000495329ENST00000621467ENSG00000224299ENST00000434543ENSG00000224590ENST00000452205ENSG00000227736ENST00000454456ENSG00000227841ENST00000419366ENSG00000234842ENST00000436962ENSG00000241790ENST00000416471ENSG00000249177ENST00000503122CIL_00020P_0002ENSMUSG00000038079ENSMUST00000087475ENSMUST00000094917ENSMUST00000185951ENSMUST00000186395ENSMUST00000186794ENSMUST00000186820ENSMUST00000190014ENSMUSG00000072295ENSMUST00000097080ENSMUST00000149784ENSMUSG00000097573ENSMUST00000180570ENSMUST00000189096ENSMUSG00000099752ENSMUST00000188707ENSMUST00000191356
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00020P_0001ENSG00000155754ENST00000286195ENST00000439140ENST00000439802ENST00000450242ENSG00000155755ENST00000286196ENST00000409444ENST00000409883ENST00000432684ENST00000466641ENST00000471318ENST00000489550ENST00000495329ENST00000621467ENSG00000224299ENST00000434543ENSG00000224590ENST00000452205ENSG00000227736ENST00000454456ENSG00000227841ENST00000419366ENSG00000234842ENST00000436962ENSG00000241790ENST00000416471ENSG00000249177ENST00000503122CIL_00020P_0002ENSMUSG00000038079ENSMUST00000087475ENSMUST00000094917ENSMUST00000186794ENSMUSG00000072295ENSMUST00000097080ENSMUST00000149784ENSMUSG00000097573ENSMUST00000180570ENSMUST00000189096ENSMUSG00000099752ENSMUST00000188707ENSMUST00000191356
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000155754 ENST00000286195 0.087±0.00 0.045±0.00 N/A 0.145±0.00 0.233±0.00 N/A 0.359±0.10 N/A N/A 0.086±0.00 N/A 0.043±0.00 0.024±0.00 10.901±0.00
ENST00000439140 0.011±0.00 0.039±0.00 0.025±0.00 0.065±0.00 0.040±0.00 0.001±0.00 0.069±0.01 0.021±0.00 0.011±0.00 N/A N/A 0.090±0.03 0.007±0.00 6.338±0.82
ENST00000439802 N/A N/A 0.054±0.00 0.562±0.00 N/A 0.039±0.00 0.837±0.00 0.047±0.00 0.142±0.00 0.268±0.25 0.174±0.00 0.182±0.05 0.048±0.00 N/A
ENST00000450242 N/A N/A N/A N/A 0.104±0.01 0.013±0.00 0.583±0.00 N/A N/A N/A N/A 0.172±0.18 0.044±0.00 N/A
ENST00000482942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000155755 ENST00000286196 0.814±0.00 1.161±0.00 N/A N/A 2.605±0.00 0.967±0.55 1.439±0.76 2.021±0.00 0.389±0.00 1.949±0.00 2.864±0.00 2.972±1.43 1.854±0.41 2.416±0.08
ENST00000409444 0.597±0.00 0.627±0.00 0.876±0.00 2.472±0.47 0.872±0.27 N/A 0.423±0.08 0.393±0.00 0.795±0.00 N/A 1.013±0.00 1.180±0.89 0.191±0.02 0.607±0.07
ENST00000409883 N/A 0.722±0.00 N/A 1.814±0.00 0.935±0.00 0.472±0.16 0.627±0.00 0.675±0.00 0.125±0.00 0.500±0.00 1.026±0.00 1.816±0.87 0.340±0.12 N/A
ENST00000432684 1.633±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.458±0.00 N/A N/A N/A
ENST00000444047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466641 N/A N/A N/A N/A N/A 2.752±0.00 2.760±0.00 N/A N/A N/A N/A 12.846±0.00 6.302±4.53 8.218±3.99
ENST00000466839 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471318 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.279±0.00 N/A N/A N/A N/A
ENST00000480124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489550 N/A N/A N/A N/A N/A N/A N/A 1.217±0.00 N/A N/A N/A N/A N/A 5.596±0.00
ENST00000495329 N/A 0.546±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621467 0.798±0.00 N/A N/A N/A N/A N/A N/A N/A 0.511±0.00 N/A N/A N/A 0.866±0.00 N/A
ENSG00000224299 ENST00000434543 N/A N/A N/A 0.060±0.00 0.110±0.00 N/A N/A N/A N/A 0.058±0.00 N/A 0.031±0.00 N/A 0.264±0.19
ENSG00000224590 ENST00000452205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.274±0.00 N/A N/A
ENSG00000227736 ENST00000454456 N/A N/A N/A N/A 0.286±0.00 N/A 0.012±0.00 N/A N/A N/A N/A N/A N/A 0.136±0.08
ENSG00000227841 ENST00000419366 N/A N/A N/A 0.029±0.01 0.017±0.00 N/A 0.241±0.00 N/A 0.172±0.00 N/A N/A 0.067±0.04 N/A 0.071±0.04
ENSG00000234842 ENST00000436962 0.052±0.00 N/A N/A 0.060±0.00 0.383±0.00 N/A 0.093±0.00 N/A 0.102±0.00 0.074±0.00 N/A 0.138±0.10 N/A 0.118±0.08
ENSG00000241790 ENST00000416471 N/A N/A N/A N/A N/A N/A 0.467±0.00 0.261±0.00 1.135±0.00 1.467±0.00 1.234±0.00 2.000±0.00 N/A N/A
ENSG00000249177 ENST00000503122 N/A N/A N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A N/A 0.035±0.00 0.067±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038079 ENSMUST00000087475 5.762±1.05 2.201±0.00 7.547±1.52 8.504±2.34 5.344±0.00 1.578±0.09 N/A 6.701±0.97 4.056±0.42 7.290±0.48 N/A 4.978±1.00 4.533±0.00 6.928±0.00
ENSMUST00000094917 N/A 2.533±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186794 N/A 2.667±0.00 N/A 8.819±0.00 3.934±0.11 N/A 1.627±0.31 6.289±0.00 N/A N/A N/A 4.989±0.00 N/A 9.278±2.87
ENSMUST00000186820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000072295 ENSMUST00000097080 N/A N/A N/A 0.022±0.01 N/A N/A N/A 0.050±0.02 0.006±0.00 0.042±0.00 0.017±0.00 0.026±0.00 0.019±0.01 65.904±69.09
ENSMUST00000149784 N/A N/A N/A 0.124±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000097573 ENSMUST00000180570 N/A 1.538±0.66 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.405±0.68
ENSMUST00000189096 N/A 1.062±0.17 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000099752 ENSMUST00000188707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.891±0.36
ENSMUST00000191356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.255±0.00

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