C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00021Z_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000024920-ENSDARG00000030532 CGP 7955 15:21400009-21499016
GeneTranscriptPositionBiotype
ENSDARG00000024920 (tmem136a)
transmembrane protein 136a 		ENSDART00000031976 (tmem136a-201) 21400009-21406386 protein_coding
ENSDARG00000030532 (ARHGEF12 (1 of 2))
Rho guanine nucleotide exchange factor (GEF) 12 		ENSDART00000040542 (ARHGEF12 (1 of 2)-201) 21410227-21499016 protein_coding
CIL_00021Z_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000181264-ENSG00000196914 CGP 9606 11:120325129-120489936
GeneTranscriptPositionBiotype
ENSG00000181264 (TMEM136)
transmembrane protein 136 		ENST00000314475 (TMEM136-003) 120325296-120330818 protein_coding
ENST00000375095 (TMEM136-002) 120325129-120333679 protein_coding
ENST00000524680 (TMEM136-005) 120327120-120327641 processed_transcript
ENST00000529187 (TMEM136-001) 120325307-120333682 protein_coding
ENST00000531346 (TMEM136-004) 120325296-120333679 processed_transcript
ENSG00000196914 (ARHGEF12)
Rho guanine nucleotide exchange factor (GEF) 12 		ENST00000356641 (ARHGEF12-015) 120336914-120487060 protein_coding
ENST00000397843 (ARHGEF12-001) 120337078-120489936 protein_coding
ENST00000525222 (ARHGEF12-012) 120449275-120459194 retained_intron
ENST00000525960 (ARHGEF12-009) 120445422-120447266 retained_intron
ENST00000526067 (ARHGEF12-014) 120475975-120480107 retained_intron
ENST00000528225 (ARHGEF12-008) 120438448-120451633 retained_intron
ENST00000528681 (ARHGEF12-007) 120477000-120477573 retained_intron
ENST00000529970 (ARHGEF12-006) 120385321-120477646 retained_intron
ENST00000530388 (ARHGEF12-005) 120405933-120411837 retained_intron
ENST00000530747 (ARHGEF12-013) 120457718-120467308 retained_intron
ENST00000531616 (ARHGEF12-010) 120462549-120473127 retained_intron
ENST00000532823 (ARHGEF12-011) 120448494-120457752 retained_intron
ENST00000532993 (ARHGEF12-003) 120385294-120489034 protein_coding
ENST00000612968 (ARHGEF12-016) 120457051-120459339 retained_intron
ENSG00000274303 (7SK)
7SK RNA 		ENST00000621414 (7SK.1-213) 120365666-120365963 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00021Z_0001ENSDARG00000024920ENSDART00000031976ENSDARG00000030532ENSDART00000040542CIL_00021Z_0002ENSG00000181264ENST00000314475ENST00000375095ENST00000524680ENST00000529187ENST00000531346ENSG00000196914ENST00000356641ENST00000397843ENST00000525222ENST00000525960ENST00000526067ENST00000528225ENST00000528681ENST00000529970ENST00000530388ENST00000530747ENST00000531616ENST00000532823ENST00000532993ENST00000612968ENSG00000274303ENST00000621414
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00021Z_0001ENSDARG00000024920ENSDART00000031976ENSDARG00000030532ENSDART00000040542CIL_00021Z_0002ENSG00000181264ENST00000314475ENST00000375095ENST00000524680ENST00000529187ENST00000531346ENSG00000196914ENST00000356641ENST00000397843ENST00000529970ENST00000532993ENSG00000274303ENST00000621414
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000024920 ENSDART00000031976 N/A N/A N/A 9.795±2.13 N/A N/A 0.963±0.36 1.302±0.51 0.058±0.00 N/A 1.304±0.00 N/A N/A N/A
ENSDARG00000030532 ENSDART00000040542 N/A N/A N/A 1.390±1.29 N/A N/A 1.760±1.73 1.578±1.73 0.610±0.00 N/A 0.732±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000181264 ENST00000314475 N/A N/A N/A N/A 1.020±0.00 N/A 1.061±0.00 N/A 1.057±0.00 1.335±0.31 0.138±0.00 0.336±0.00 0.902±0.33 N/A
ENST00000375095 0.785±0.00 0.106±0.00 N/A 1.769±0.21 0.551±0.00 0.754±0.00 1.073±0.13 1.367±0.00 N/A 0.852±0.00 N/A 1.682±0.20 0.618±0.23 1.546±0.00
ENST00000524680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.056±0.00 N/A N/A N/A
ENST00000529187 N/A N/A N/A N/A 0.531±0.00 0.347±0.00 0.320±0.00 N/A N/A N/A 0.078±0.00 0.536±0.09 0.381±0.22 N/A
ENST00000531346 N/A 0.358±0.00 0.759±0.00 1.197±0.00 N/A 0.233±0.00 N/A 0.151±0.00 0.533±0.40 0.734±0.30 0.017±0.00 0.681±0.13 0.930±0.56 0.614±0.00
ENSG00000196914 ENST00000356641 N/A N/A N/A N/A 6.880±0.00 8.531±0.00 N/A N/A N/A N/A 1.891±0.00 2.738±0.00 N/A 2.201±0.00
ENST00000397843 N/A 2.911±0.00 11.924±0.00 6.803±1.80 4.594±2.69 4.013±0.00 1.984±0.00 4.634±1.21 6.452±0.00 3.974±0.70 1.430±0.61 2.962±1.11 1.571±0.14 N/A
ENST00000525222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528681 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529970 N/A N/A N/A 13.879±0.00 6.649±0.00 N/A N/A N/A N/A N/A 2.076±0.00 N/A N/A N/A
ENST00000530388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532993 N/A 10.825±0.00 N/A 10.155±3.11 7.388±0.00 7.599±2.95 4.824±0.28 10.948±4.42 3.484±0.00 8.450±2.46 N/A 7.446±3.22 6.115±0.00 6.024±2.35
ENST00000612968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000274303 ENST00000621414 0.162±0.00 0.317±0.00 N/A N/A 0.190±0.00 N/A 0.224±0.00 0.229±0.00 0.134±0.00 0.367±0.07 N/A N/A N/A N/A

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