C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000258_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196821-ENSG00000124562 CGP 9606 6:34587288-34773794
GeneTranscriptPositionBiotype
ENSG00000124562 (SNRPC)
small nuclear ribonucleoprotein polypeptide C 		ENST00000244520 (SNRPC-001) 34757406-34773794 protein_coding
ENST00000374017 (SNRPC-002) 34757554-34773794 protein_coding
ENST00000374018 (SNRPC-003) 34757525-34773714 protein_coding
ENST00000474635 (SNRPC-004) 34757912-34773532 processed_transcript
ENSG00000196821 (C6orf106)
chromosome 6 open reading frame 106 		ENST00000374021 (C6orf106-002) 34590509-34671956 protein_coding
ENST00000374023 (C6orf106-001) 34587288-34696847 protein_coding
ENST00000374026 (C6orf106-003) 34587288-34696859 protein_coding
ENSG00000216636 (RPL7P25)
ribosomal protein L7 pseudogene 25 		ENST00000404151 (RPL7P25-001) 34616538-34617258 processed_pseudogene
ENSG00000217130 (RP3-375P9.2)
 ENST00000408001 (RP3-375P9.2-001) 34744176-34744673 processed_pseudogene
ENSG00000220643 (RP3-391O22.1)
 ENST00000404133 (RP3-391O22.1-001) 34686602-34687106 processed_pseudogene
ENSG00000265123 (RN7SL200P)
RNA, 7SL, cytoplasmic 200, pseudogene 		ENST00000585129 (RN7SL200P-201) 34685355-34685642 misc_RNA
CIL_000258_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000056692-ENSMUSG00000024217 CGP 10090 17:27751232-27851968
GeneTranscriptPositionBiotype
ENSMUSG00000024217 (Snrpc)
U1 small nuclear ribonucleoprotein C 		ENSMUST00000071006 (Snrpc-001) 27839974-27851964 protein_coding
ENSMUST00000137581 (Snrpc-002) 27840134-27851968 retained_intron
ENSMUSG00000056692 (D17Wsu92e)
DNA segment, Chr 17, Wayne State University 92, expressed 		ENSMUST00000075076 (D17Wsu92e-002) 27767489-27820542 protein_coding
ENSMUST00000114859 (D17Wsu92e-003) 27751246-27820491 protein_coding
ENSMUST00000114863 (D17Wsu92e-001) 27751232-27820558 protein_coding
ENSMUSG00000080731 (Rps2-ps9)
ribosomal protein S2, pseudogene 9 		ENSMUST00000121414 (Rps2-ps9-001) 27784427-27785243 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000258_0001ENSG00000124562ENST00000244520ENST00000374017ENST00000374018ENST00000474635ENSG00000196821ENST00000374021ENST00000374023ENST00000374026ENSG00000216636ENST00000404151ENSG00000217130ENST00000408001ENSG00000220643ENST00000404133ENSG00000265123ENST00000585129CIL_000258_0002ENSMUSG00000024217ENSMUST00000071006ENSMUST00000137581ENSMUSG00000056692ENSMUST00000075076ENSMUST00000114859ENSMUST00000114863ENSMUSG00000080731ENSMUST00000121414
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000258_0001ENSG00000124562ENST00000244520ENST00000374017ENST00000374018ENST00000474635ENSG00000196821ENST00000374021ENST00000374023ENST00000374026ENSG00000216636ENST00000404151ENSG00000217130ENST00000408001ENSG00000220643ENST00000404133ENSG00000265123ENST00000585129CIL_000258_0002ENSMUSG00000024217ENSMUST00000071006ENSMUST00000137581ENSMUSG00000056692ENSMUST00000075076ENSMUST00000114859ENSMUST00000114863ENSMUSG00000080731ENSMUST00000121414
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124562 ENST00000244520 17.711±0.00 40.440±0.00 2.299±0.00 15.239±6.49 12.589±5.86 11.041±2.64 25.564±12.81 16.740±3.82 15.352±9.82 10.634±6.58 22.046±8.80 36.853±15.39 45.852±12.61 48.170±10.82
ENST00000374017 N/A N/A 1.390±0.00 N/A N/A N/A N/A N/A 0.824±0.00 N/A N/A N/A N/A N/A
ENST00000374018 3.394±0.00 N/A N/A 8.121±0.00 5.730±3.73 16.167±0.00 17.104±0.00 9.853±0.00 3.596±0.00 5.506±3.51 5.269±0.00 29.185±17.56 52.896±2.16 11.251±0.00
ENST00000474635 N/A N/A 4.996±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000196821 ENST00000374021 N/A N/A N/A 5.924±0.00 4.321±0.00 N/A 2.257±0.00 5.896±0.00 N/A N/A N/A N/A N/A 30.653±0.00
ENST00000374023 17.041±0.00 22.308±0.00 1.320±0.00 14.715±13.56 29.148±27.24 16.660±11.68 30.431±29.44 20.237±17.38 18.638±15.75 26.197±24.07 42.796±39.38 10.830±6.16 15.245±3.51 30.934±9.66
ENST00000374026 N/A N/A 0.767±0.00 N/A N/A N/A 0.719±0.00 N/A N/A N/A 6.461±4.18 3.574±0.45 N/A N/A
ENSG00000216636 ENST00000404151 N/A 0.077±0.00 0.601±0.00 0.054±0.00 0.530±0.51 N/A 0.068±0.00 N/A 0.130±0.00 0.072±0.02 0.027±0.00 0.025±0.00 N/A 0.014±0.00
ENSG00000217130 ENST00000408001 0.147±0.00 0.475±0.00 N/A N/A 0.210±0.00 0.267±0.00 0.073±0.00 N/A 0.209±0.14 0.156±0.00 0.138±0.00 0.141±0.06 0.212±0.09 0.114±0.03
ENSG00000220643 ENST00000404133 N/A 0.233±0.00 N/A N/A N/A N/A 0.043±0.00 0.136±0.00 N/A N/A N/A N/A N/A 0.041±0.00
ENSG00000265123 ENST00000585129 0.133±0.00 0.557±0.00 1.289±0.00 N/A 1.044±0.46 4.457±0.00 N/A 0.342±0.00 0.197±0.00 N/A 0.065±0.00 0.592±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024217 ENSMUST00000071006 16.660±3.65 58.052±2.36 30.330±1.12 34.585±19.90 29.123±12.97 34.741±2.56 14.699±3.58 19.203±1.58 41.319±31.49 26.636±1.87 33.554±1.75 41.933±6.01 57.812±32.30 55.693±22.89
ENSMUST00000137581 0.585±0.11 N/A 0.609±0.01 0.739±0.37 0.484±0.19 N/A 0.211±0.00 N/A N/A 0.811±0.00 N/A 0.472±0.06 0.213±0.05 0.180±0.00
ENSMUSG00000056692 ENSMUST00000075076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.257±1.40 27.278±13.38
ENSMUST00000114859 28.398±7.38 77.475±9.56 11.815±0.06 12.273±7.15 34.110±8.89 25.264±4.98 27.260±3.20 46.687±6.81 32.089±25.67 42.311±1.30 18.453±2.55 20.091±6.07 10.838±2.24 4.651±0.31
ENSMUST00000114863 18.893±1.22 10.596±0.00 20.460±3.11 14.344±12.39 14.594±4.98 20.475±3.32 21.172±2.60 27.970±2.54 18.555±8.85 15.631±3.52 69.028±3.49 20.164±4.64 21.858±10.49 10.865±1.36
ENSMUSG00000080731 ENSMUST00000121414 0.352±0.00 0.746±0.10 0.384±0.03 0.333±0.24 0.624±0.12 0.385±0.20 0.161±0.04 0.325±0.07 0.228±0.12 0.605±0.00 0.068±0.00 0.715±0.51 0.330±0.23 0.191±0.11

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