C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00026H_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000164690-ENSG00000105982 CGP 9606 7:155799986-156677130
GeneTranscriptPositionBiotype
ENSG00000105983 (LMBR1)
limb development membrane protein 1 		ENST00000353442 (LMBR1-001) 156677791-156893230 protein_coding
ENST00000359422 (LMBR1-201) 156680877-156893208 protein_coding
ENST00000414218 (LMBR1-010) 156796474-156893179 nonsense_mediated_decay
ENST00000415428 (LMBR1-004) 156682211-156892987 protein_coding
ENST00000430278 (LMBR1-008) 156763110-156893183 processed_transcript
ENST00000430825 (LMBR1-019) 156668946-156682093 processed_transcript
ENST00000433968 (LMBR1-011) 156826634-156893183 processed_transcript
ENST00000434278 (LMBR1-009) 156763125-156893182 nonsense_mediated_decay
ENST00000434453 (LMBR1-002) 156822241-156893216 nonsense_mediated_decay
ENST00000434503 (LMBR1-014) 156688098-156893208 nonsense_mediated_decay
ENST00000444719 (LMBR1-013) 156763143-156893157 nonsense_mediated_decay
ENST00000448926 (LMBR1-005) 156681520-156796493 nonsense_mediated_decay
ENST00000454132 (LMBR1-003) 156682991-156893159 nonsense_mediated_decay
ENST00000461469 (LMBR1-007) 156763703-156892579 processed_transcript
ENST00000461603 (LMBR1-015) 156688103-156747978 processed_transcript
ENST00000477983 (LMBR1-016) 156733861-156763177 retained_intron
ENST00000485985 (LMBR1-012) 156833478-156893183 retained_intron
ENST00000486837 (LMBR1-017) 156688114-156726103 retained_intron
ENST00000498034 (LMBR1-006) 156826599-156892590 processed_transcript
ENST00000609081 (LMBR1-020) 156676251-156679109 processed_transcript
ENST00000609774 (LMBR1-018) 156677843-156679133 processed_transcript
ENSG00000164690 (SHH)
sonic hedgehog 		ENST00000297261 (SHH-001) 155799986-155812273 protein_coding
ENST00000430104 (SHH-003) 155800040-155809072 protein_coding
ENST00000435425 (SHH-004) 155800050-155809072 nonsense_mediated_decay
ENST00000441114 (SHH-005) 155800039-155809072 nonsense_mediated_decay
ENST00000472308 (SHH-002) 155806582-155807370 processed_transcript
ENSG00000204876 (AC021218.2)
 ENST00000377722 (AC021218.2-001) 155962632-155966343 lincRNA
ENSG00000228569 (AC073133.2)
 ENST00000426187 (AC073133.2-001) 156432523-156435833 lincRNA
ENSG00000233878 (AC073133.1)
 ENST00000436670 (AC073133.1-001) 156437789-156445588 lincRNA
ENSG00000234450 (AC005534.6)
 ENST00000431047 (AC005534.6-001) 156633355-156633787 processed_pseudogene
ENSG00000270584 (RP11-362B23.1)
 ENST00000605066 (RP11-362B23.1-001) 156263547-156263802 processed_pseudogene
ENSG00000279418 (LINC00244)
long intergenic non-protein coding RNA 244 		ENST00000625073 (LINC00244-001) 156540491-156541103 lincRNA
CIL_00026H_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000002633-ENSMUSG00000029130 CGP 10090 5:28456815-29225524
GeneTranscriptPositionBiotype
ENSMUSG00000002633 (Shh)
sonic hedgehog 		ENSMUST00000002708 (Shh-001) 28456815-28467101 protein_coding
ENSMUSG00000029130 (Rnf32)
ring finger protein 32 		ENSMUST00000001247 (Rnf32-002) 29195997-29225522 protein_coding
ENSMUST00000159272 (Rnf32-008) 29195995-29198747 protein_coding
ENSMUST00000160051 (Rnf32-006) 29196084-29197991 processed_transcript
ENSMUST00000160246 (Rnf32-001) 29196006-29225524 protein_coding
ENSMUST00000160383 (Rnf32-003) 29195993-29225481 nonsense_mediated_decay
ENSMUST00000160887 (Rnf32-005) 29196058-29207651 retained_intron
ENSMUST00000160888 (Rnf32-009) 29195992-29203135 protein_coding
ENSMUST00000161398 (Rnf32-007) 29196003-29203195 protein_coding
ENSMUST00000162975 (Rnf32-010) 29198671-29225301 protein_coding
ENSMUST00000163050 (Rnf32-004) 29196055-29225485 nonsense_mediated_decay
ENSMUST00000168460 (Rnf32-201) 29198006-29225291 protein_coding
ENSMUSG00000089975 (Gm7420)
predicted gene 7420 		ENSMUST00000162836 (Gm7420-001) 29217724-29218569 processed_pseudogene
ENSMUSG00000097453 (Gm26894)
predicted gene, 26894 		ENSMUST00000180828 (Gm26894-201) 28466374-28480973 lincRNA
ENSMUSG00000097726 (9530036O11Rik)
RIKEN cDNA 9530036O11Rik 		ENSMUST00000180878 (9530036O11Rik-201) 28458274-28933995 lincRNA
ENSMUST00000181202 (9530036O11Rik-202) 28466984-28719209 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00026H_0001ENSG00000105983ENST00000353442ENST00000359422ENST00000414218ENST00000415428ENST00000430278ENST00000430825ENST00000433968ENST00000434278ENST00000434453ENST00000434503ENST00000444719ENST00000448926ENST00000454132ENST00000461469ENST00000461603ENST00000477983ENST00000485985ENST00000486837ENST00000498034ENST00000609081ENST00000609774ENSG00000164690ENST00000297261ENST00000430104ENST00000435425ENST00000441114ENST00000472308ENSG00000204876ENST00000377722ENSG00000228569ENST00000426187ENSG00000233878ENST00000436670ENSG00000234450ENST00000431047ENSG00000270584ENST00000605066ENSG00000279418ENST00000625073CIL_00026H_0002ENSMUSG00000002633ENSMUST00000002708ENSMUSG00000029130ENSMUST00000001247ENSMUST00000159272ENSMUST00000160051ENSMUST00000160246ENSMUST00000160383ENSMUST00000160887ENSMUST00000160888ENSMUST00000161398ENSMUST00000162975ENSMUST00000163050ENSMUST00000168460ENSMUSG00000089975ENSMUST00000162836ENSMUSG00000097453ENSMUST00000180828ENSMUSG00000097726ENSMUST00000180878ENSMUST00000181202
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00026H_0001ENSG00000105983ENST00000353442ENST00000359422ENST00000415428ENST00000448926ENST00000454132ENSG00000164690ENST00000297261ENST00000430104ENSG00000204876ENST00000377722ENSG00000228569ENST00000426187ENSG00000233878ENST00000436670ENSG00000234450ENST00000431047ENSG00000270584ENST00000605066ENSG00000279418ENST00000625073CIL_00026H_0002ENSMUSG00000002633ENSMUST00000002708ENSMUSG00000029130ENSMUST00000001247ENSMUST00000159272ENSMUST00000160051ENSMUST00000160246ENSMUST00000160383ENSMUST00000160887ENSMUST00000160888ENSMUST00000161398ENSMUST00000162975ENSMUST00000163050ENSMUST00000168460ENSMUSG00000089975ENSMUST00000162836ENSMUSG00000097453ENSMUST00000180828ENSMUSG00000097726ENSMUST00000180878ENSMUST00000181202
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000105983 ENST00000353442 N/A N/A 0.897±0.00 1.675±0.00 0.981±0.58 N/A 0.422±0.00 1.650±0.00 N/A 1.531±0.83 N/A 2.012±0.80 N/A N/A
ENST00000359422 1.361±0.00 1.135±0.00 2.068±0.00 2.883±0.00 2.438±1.53 2.060±0.67 0.836±0.21 1.976±0.00 N/A 1.806±0.00 0.828±0.15 2.333±0.56 1.146±0.00 6.786±0.00
ENST00000414218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415428 2.043±0.00 1.528±0.00 1.943±0.00 N/A 1.307±0.00 2.475±0.00 1.108±0.18 N/A 3.675±0.00 5.311±0.00 N/A 5.120±0.00 2.585±0.00 N/A
ENST00000430278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448926 3.797±0.00 2.083±0.00 N/A 3.480±0.27 1.585±0.00 3.028±0.00 1.794±0.00 3.552±0.78 1.587±0.00 1.965±0.00 1.119±0.17 3.939±2.19 2.836±0.70 9.420±0.00
ENST00000454132 2.829±0.00 1.765±0.00 2.039±0.00 5.134±1.29 2.685±1.11 2.609±0.00 1.592±0.35 5.915±0.00 3.272±0.00 3.471±0.00 1.030±0.00 6.474±3.55 4.229±2.14 22.965±0.00
ENST00000461469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486837 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000164690 ENST00000297261 0.090±0.00 N/A 0.129±0.00 0.333±0.00 0.258±0.00 N/A 0.011±0.00 0.720±0.29 N/A 0.362±0.00 0.007±0.00 0.728±0.79 0.014±0.00 0.193±0.15
ENST00000430104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.044±0.00
ENST00000435425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000204876 ENST00000377722 0.033±0.00 N/A 0.322±0.00 N/A 0.275±0.00 0.532±0.00 0.032±0.00 0.167±0.07 0.078±0.02 0.005±0.00 N/A 1.120±0.83 N/A 0.005±0.00
ENSG00000228569 ENST00000426187 N/A N/A N/A 0.423±0.00 0.416±0.00 0.284±0.02 N/A 0.824±0.00 N/A N/A 1.924±0.00 0.116±0.02 N/A 0.375±0.27
ENSG00000233878 ENST00000436670 0.042±0.00 0.041±0.00 0.217±0.00 0.017±0.00 0.371±0.31 0.093±0.06 0.009±0.00 0.055±0.00 N/A 0.054±0.00 N/A 0.038±0.02 0.017±0.00 0.158±0.00
ENSG00000234450 ENST00000431047 0.064±0.00 0.337±0.00 N/A 0.464±0.26 0.542±0.24 0.095±0.00 0.090±0.00 0.236±0.00 0.378±0.15 0.546±0.00 0.087±0.00 0.222±0.10 0.143±0.00 0.085±0.06
ENSG00000270584 ENST00000605066 0.381±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000279418 ENST00000625073 N/A 0.024±0.00 N/A 0.053±0.00 1.186±0.00 0.068±0.00 N/A 0.049±0.00 N/A N/A N/A 0.162±0.05 N/A 0.122±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000002633 ENSMUST00000002708 0.109±0.07 11.250±6.24 31.060±2.27 1.155±0.43 N/A 0.322±0.06 N/A 0.382±0.03 0.024±0.01 2.459±1.27 0.021±0.00 0.040±0.02 0.078±0.09 0.123±0.14
ENSMUSG00000029130 ENSMUST00000001247 0.222±0.00 N/A 0.708±0.00 2.424±0.08 N/A N/A N/A 0.107±0.00 0.043±0.00 0.172±0.00 N/A 0.273±0.00 0.136±0.00 82.812±8.24
ENSMUST00000159272 N/A N/A N/A N/A N/A N/A N/A N/A 0.231±0.04 N/A N/A 1.249±0.00 0.662±0.00 N/A
ENSMUST00000160051 N/A N/A N/A N/A 0.246±0.06 1.984±0.48 N/A N/A N/A N/A N/A 0.985±0.00 N/A N/A
ENSMUST00000160246 N/A N/A N/A 0.818±0.00 N/A 0.546±0.00 N/A N/A 0.080±0.03 N/A 0.131±0.04 1.771±0.00 0.187±0.16 19.279±0.00
ENSMUST00000160383 0.086±0.00 0.422±0.00 0.361±0.00 1.856±0.00 0.111±0.00 N/A 0.122±0.04 0.244±0.12 0.053±0.03 0.346±0.22 0.209±0.00 0.744±0.22 0.111±0.00 N/A
ENSMUST00000160887 0.099±0.07 N/A N/A 0.509±0.16 0.103±0.01 0.685±0.06 0.087±0.06 0.135±0.04 0.062±0.03 0.212±0.04 0.104±0.05 0.394±0.10 0.081±0.00 N/A
ENSMUST00000160888 N/A N/A N/A N/A N/A N/A N/A N/A 0.132±0.03 N/A 0.096±0.00 0.651±0.15 0.194±0.00 N/A
ENSMUST00000161398 N/A N/A N/A N/A N/A N/A N/A 0.503±0.01 N/A N/A N/A N/A N/A N/A
ENSMUST00000162975 0.045±0.00 1.727±0.00 N/A N/A 0.208±0.00 N/A 0.045±0.00 0.366±0.02 0.094±0.00 N/A 0.092±0.00 0.858±0.36 N/A N/A
ENSMUST00000163050 N/A N/A N/A N/A N/A N/A N/A N/A 0.055±0.00 N/A 0.071±0.00 0.463±0.00 0.276±0.10 N/A
ENSMUST00000168460 0.234±0.14 1.015±0.47 N/A 0.845±0.00 0.193±0.03 N/A N/A 0.286±0.10 0.095±0.01 0.515±0.13 0.158±0.15 1.134±0.51 0.239±0.09 38.097±7.22
ENSMUSG00000089975 ENSMUST00000162836 0.138±0.06 0.254±0.08 0.226±0.00 0.680±0.05 0.440±0.13 0.384±0.13 0.074±0.02 0.288±0.08 0.101±0.13 0.227±0.12 0.064±0.03 0.417±0.26 0.132±0.07 1.060±0.45
ENSMUSG00000097453 ENSMUST00000180828 N/A N/A 19.351±2.45 2.556±0.00 0.090±0.03 N/A N/A 0.236±0.04 0.047±0.03 N/A N/A 0.102±0.07 0.054±0.04 0.158±0.00
ENSMUSG00000097726 ENSMUST00000180878 0.042±0.00 16.598±0.00 N/A N/A N/A N/A 0.042±0.01 0.400±0.04 0.007±0.00 N/A N/A N/A N/A 0.036±0.00
ENSMUST00000181202 0.017±0.00 N/A N/A 0.113±0.00 0.023±0.00 N/A 0.026±0.00 0.058±0.01 0.014±0.00 N/A N/A 0.055±0.03 0.025±0.02 0.094±0.06

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