C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00028W_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163660-ENSG00000197415 CGP 9606 3:157146508-157533619
GeneTranscriptPositionBiotype
ENSG00000163660 (CCNL1)
cyclin L1 		ENST00000295925 (CCNL1-201) 157157023-157160094 protein_coding
ENST00000295926 (CCNL1-001) 157147553-157160213 protein_coding
ENST00000461804 (CCNL1-002) 157146508-157160760 protein_coding
ENST00000464316 (CCNL1-006) 157147795-157154666 retained_intron
ENST00000464575 (CCNL1-015) 157153042-157159255 retained_intron
ENST00000464679 (CCNL1-019) 157149444-157152210 retained_intron
ENST00000465947 (CCNL1-012) 157152177-157160136 nonsense_mediated_decay
ENST00000466101 (CCNL1-011) 157158915-157160137 retained_intron
ENST00000467081 (CCNL1-014) 157152740-157159441 retained_intron
ENST00000467849 (CCNL1-022) 157148949-157149633 retained_intron
ENST00000468977 (CCNL1-020) 157148316-157150074 nonsense_mediated_decay
ENST00000470121 (CCNL1-005) 157148241-157160094 nonsense_mediated_decay
ENST00000471044 (CCNL1-010) 157158665-157160158 retained_intron
ENST00000471247 (CCNL1-008) 157147796-157152501 retained_intron
ENST00000474539 (CCNL1-007) 157147796-157153828 retained_intron
ENST00000475298 (CCNL1-003) 157147796-157160155 nonsense_mediated_decay
ENST00000476367 (CCNL1-004) 157149005-157160110 retained_intron
ENST00000476744 (CCNL1-021) 157148121-157149945 retained_intron
ENST00000477127 (CCNL1-009) 157149287-157160178 nonsense_mediated_decay
ENST00000478454 (CCNL1-016) 157152017-157158951 retained_intron
ENST00000479052 (CCNL1-017) 157150128-157153628 processed_transcript
ENST00000479596 (CCNL1-013) 157152082-157160135 retained_intron
ENST00000481173 (CCNL1-024) 157149947-157150629 retained_intron
ENST00000483789 (CCNL1-018) 157151400-157153106 retained_intron
ENST00000495471 (CCNL1-023) 157149941-157150799 retained_intron
ENSG00000163661 (PTX3)
pentraxin 3, long 		ENST00000295927 (PTX3-001) 157436789-157443628 protein_coding
ENSG00000197415 (VEPH1)
ventricular zone expressed PH domain-containing 1 		ENST00000362010 (VEPH1-001) 157259742-157503427 protein_coding
ENST00000392832 (VEPH1-005) 157260909-157499554 protein_coding
ENST00000392833 (VEPH1-004) 157259742-157503339 protein_coding
ENST00000461299 (VEPH1-007) 157470480-157533616 protein_coding
ENST00000468233 (VEPH1-002) 157459622-157503626 protein_coding
ENST00000469007 (VEPH1-016) 157409669-157428427 processed_transcript
ENST00000472419 (VEPH1-018) 157363293-157364481 retained_intron
ENST00000473907 (VEPH1-010) 157470419-157533608 nonsense_mediated_decay
ENST00000475050 (VEPH1-009) 157470452-157533615 nonsense_mediated_decay
ENST00000479987 (VEPH1-012) 157428322-157533619 protein_coding
ENST00000482434 (VEPH1-013) 157460095-157489356 retained_intron
ENST00000482685 (VEPH1-015) 157381273-157436953 processed_transcript
ENST00000483440 (VEPH1-008) 157489061-157499555 processed_transcript
ENST00000487753 (VEPH1-011) 157460215-157533606 protein_coding
ENST00000488772 (VEPH1-017) 157363692-157381673 processed_transcript
ENST00000489602 (VEPH1-006) 157470502-157533614 protein_coding
ENST00000490235 (VEPH1-014) 157459622-157470529 processed_transcript
ENST00000494677 (VEPH1-003) 157459519-157503574 protein_coding
ENST00000537559 (VEPH1-201) 157459621-157495506 protein_coding
ENSG00000241770 (RP11-555M1.3)
 ENST00000480817 (RP11-555M1.3-001) 157163452-157169133 antisense
ENSG00000244515 (KRT18P34)
keratin 18 pseudogene 34 		ENST00000488218 (KRT18P34-001) 157162663-157163932 processed_pseudogene
ENSG00000270981 (RP11-550I24.3)
 ENST00000605443 (RP11-550I24.3-001) 157230320-157231208 processed_pseudogene
CIL_00028W_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027829-ENSMUSG00000027831 CGP 10090 3:65946151-66296837
GeneTranscriptPositionBiotype
ENSMUSG00000027829 (Ccnl1)
cyclin L1 		ENSMUST00000029416 (Ccnl1-001) 65946151-65958249 protein_coding
ENSMUST00000122919 (Ccnl1-004) 65946151-65958199 retained_intron
ENSMUST00000129002 (Ccnl1-002) 65946151-65958162 nonsense_mediated_decay
ENSMUST00000132998 (Ccnl1-012) 65950407-65951868 retained_intron
ENSMUST00000135719 (Ccnl1-003) 65946195-65958032 nonsense_mediated_decay
ENSMUST00000142153 (Ccnl1-005) 65946509-65958163 retained_intron
ENSMUST00000144810 (Ccnl1-009) 65947954-65956856 nonsense_mediated_decay
ENSMUST00000145186 (Ccnl1-010) 65949901-65956889 nonsense_mediated_decay
ENSMUST00000146284 (Ccnl1-011) 65951249-65952993 retained_intron
ENSMUST00000148623 (Ccnl1-008) 65951434-65957653 retained_intron
ENSMUST00000149160 (Ccnl1-006) 65948892-65958181 retained_intron
ENSMUST00000149729 (Ccnl1-014) 65946782-65947998 retained_intron
ENSMUST00000150304 (Ccnl1-013) 65948508-65950978 retained_intron
ENSMUST00000154585 (Ccnl1-007) 65946151-65958169 nonsense_mediated_decay
ENSMUSG00000027831 (Veph1)
ventricular zone expressed PH domain-containing 1 		ENSMUST00000029419 (Veph1-001) 66053558-66296837 protein_coding
ENSMUST00000107837 (Veph1-003) 66056637-66136438 processed_transcript
ENSMUST00000182815 (Veph1-002) 66243998-66296748 retained_intron
ENSMUSG00000027832 (Ptx3)
pentraxin related gene 		ENSMUST00000029421 (Ptx3-001) 66219910-66225805 protein_coding
ENSMUST00000182521 (Ptx3-002) 66220245-66221430 retained_intron
ENSMUSG00000097968 (Tpi-rs2)
triosephosphate isomerase related sequence 2 		ENSMUST00000182471 (Tpi-rs2-001) 66128968-66129723 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00028W_0001ENSG00000163660ENST00000295925ENST00000295926ENST00000461804ENST00000464316ENST00000464679ENST00000467849ENST00000468977ENST00000470121ENST00000471044ENST00000471247ENST00000474539ENST00000475298ENST00000476744ENST00000479596ENSG00000163661ENST00000295927ENSG00000197415ENST00000362010ENST00000392832ENST00000392833ENST00000461299ENST00000479987ENST00000482685ENST00000488772ENSG00000241770ENST00000480817ENSG00000244515ENST00000488218ENSG00000270981ENST00000605443CIL_00028W_0002ENSMUSG00000027829ENSMUST00000029416ENSMUST00000122919ENSMUST00000129002ENSMUST00000135719ENSMUST00000142153ENSMUST00000149160ENSMUST00000154585ENSMUSG00000027831ENSMUST00000029419ENSMUST00000107837ENSMUST00000182815ENSMUSG00000027832ENSMUST00000029421ENSMUST00000182521ENSMUSG00000097968ENSMUST00000182471
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163660 ENST00000295925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.736±0.00 N/A N/A N/A
ENST00000295926 N/A N/A N/A N/A N/A 2.832±0.00 N/A N/A N/A N/A N/A 10.781±0.73 2.737±0.09 1.800±0.00
ENST00000461804 N/A N/A N/A N/A N/A N/A N/A 3.345±0.00 N/A N/A N/A N/A N/A N/A
ENST00000464316 N/A 6.841±0.00 N/A N/A 2.988±0.00 N/A 0.813±0.00 N/A N/A 6.735±0.00 0.728±0.00 N/A N/A 0.798±0.00
ENST00000464575 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 52.495±0.00 21.167±0.00 31.055±0.00
ENST00000465947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 37.011±0.00 10.083±0.00 21.999±0.00
ENST00000468977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.454±0.00 14.139±0.00
ENST00000470121 N/A N/A N/A 3.019±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.985±0.00
ENST00000471044 N/A N/A N/A N/A N/A N/A 4.715±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000471247 N/A 9.396±0.00 N/A N/A 4.003±0.00 N/A 0.657±0.00 3.122±0.00 1.560±0.00 6.636±0.00 N/A 11.373±2.15 1.355±0.00 N/A
ENST00000474539 2.000±0.00 4.293±0.00 2.502±0.00 2.227±0.32 5.587±2.02 6.022±0.00 0.937±0.00 3.350±0.00 0.846±0.00 7.923±4.20 1.597±0.00 4.583±1.29 0.723±0.00 0.616±0.00
ENST00000475298 5.265±0.00 11.992±0.00 N/A 3.299±0.00 6.276±0.00 4.178±0.00 2.761±0.00 9.201±0.00 6.196±0.00 18.055±0.00 4.398±0.00 24.764±0.00 3.840±0.23 4.126±0.00
ENST00000476367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476744 N/A N/A N/A N/A N/A N/A N/A 3.575±0.00 N/A N/A N/A 30.727±0.00 N/A N/A
ENST00000477127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.490±0.00 N/A N/A N/A
ENST00000481173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163661 ENST00000295927 80.792±0.00 2.910±0.00 N/A 0.391±0.30 1.700±0.98 18.354±17.79 0.837±0.75 4.211±0.00 2.658±2.08 15.957±0.00 0.417±0.00 0.950±1.09 4.789±3.23 1.046±0.00
ENSG00000197415 ENST00000362010 N/A N/A 1.544±0.00 N/A N/A N/A N/A 2.141±0.00 N/A 3.338±0.00 N/A 0.095±0.00 0.369±0.21 0.392±0.00
ENST00000392832 N/A N/A 1.985±0.00 N/A N/A N/A N/A 0.020±0.00 N/A 4.998±0.00 N/A 0.144±0.00 N/A N/A
ENST00000392833 N/A N/A 0.882±0.00 N/A 0.084±0.00 N/A 0.011±0.00 N/A 0.114±0.00 N/A N/A 0.034±0.01 N/A N/A
ENST00000461299 N/A N/A N/A N/A N/A 0.547±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469007 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472419 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473907 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479987 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.996±0.00
ENST00000482434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.227±0.00
ENST00000483440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488772 N/A N/A N/A N/A N/A N/A N/A 0.734±0.00 N/A N/A N/A N/A N/A N/A
ENST00000489602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000241770 ENST00000480817 N/A N/A N/A N/A 0.369±0.00 0.056±0.00 0.432±0.00 0.477±0.00 2.669±0.00 N/A N/A 0.204±0.00 0.541±0.30 0.277±0.00
ENSG00000244515 ENST00000488218 0.161±0.00 0.225±0.00 0.074±0.00 0.261±0.00 0.120±0.05 0.157±0.09 0.077±0.04 0.193±0.01 N/A 0.166±0.00 0.111±0.00 0.030±0.00 0.070±0.02 N/A
ENSG00000270981 ENST00000605443 N/A N/A N/A N/A 0.120±0.06 0.543±0.00 N/A 0.244±0.00 0.040±0.00 0.563±0.00 N/A 0.123±0.00 N/A 0.047±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027829 ENSMUST00000029416 8.797±2.53 53.428±13.54 11.047±0.41 18.607±4.32 55.298±33.64 41.023±9.11 2.390±1.00 7.309±4.89 10.631±5.52 26.863±12.39 1.528±0.04 85.379±12.85 9.029±1.11 9.453±3.25
ENSMUST00000122919 N/A N/A 4.262±0.00 3.981±1.30 N/A N/A N/A N/A 4.389±1.27 N/A 0.607±0.03 N/A N/A N/A
ENSMUST00000129002 4.699±0.38 N/A 8.872±1.93 5.404±0.00 5.295±1.21 N/A 1.778±0.14 2.325±0.49 7.600±3.17 4.962±0.00 1.648±0.56 8.643±0.17 6.316±1.03 3.490±0.49
ENSMUST00000132998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135719 N/A N/A N/A 4.781±0.00 6.797±0.00 N/A 1.973±0.88 2.229±0.00 N/A N/A 2.216±0.55 21.010±10.55 10.004±3.94 5.146±0.92
ENSMUST00000142153 4.976±0.73 N/A 6.102±1.16 4.216±0.00 4.586±1.27 N/A 1.568±0.68 2.203±0.22 4.006±2.00 7.401±0.72 1.404±0.09 7.928±3.62 5.059±1.64 1.185±0.00
ENSMUST00000144810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146284 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149160 4.111±1.32 54.075±19.30 N/A 2.536±0.00 34.385±5.24 8.478±1.20 1.081±0.23 N/A 2.684±0.86 10.135±3.71 N/A 44.600±15.70 N/A N/A
ENSMUST00000149729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154585 N/A N/A N/A N/A 4.554±0.00 N/A 1.716±0.00 1.812±0.00 N/A N/A N/A N/A N/A N/A
ENSMUSG00000027831 ENSMUST00000029419 0.076±0.04 0.034±0.02 0.011±0.00 0.664±0.20 0.020±0.00 0.026±0.01 0.034±0.00 3.168±0.99 0.046±0.04 0.301±0.10 0.003±0.00 0.188±0.06 0.095±0.10 0.113±0.03
ENSMUST00000107837 N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A 0.066±0.00 0.191±0.00 0.061±0.00
ENSMUST00000182815 N/A 0.104±0.00 0.015±0.00 N/A N/A N/A N/A N/A 0.027±0.01 N/A N/A 0.207±0.00 N/A N/A
ENSMUSG00000027832 ENSMUST00000029421 1.172±0.04 0.277±0.06 0.389±0.13 4.741±4.11 3.166±2.23 0.173±0.07 0.321±0.10 0.364±0.20 0.065±0.05 0.370±0.21 2.092±0.87 1.828±0.73 0.207±0.24 0.166±0.08
ENSMUST00000182521 0.676±0.27 0.458±0.22 0.138±0.00 0.101±0.00 4.873±1.12 0.308±0.16 0.117±0.03 0.140±0.09 0.035±0.02 0.356±0.00 3.196±0.64 1.037±0.63 0.099±0.06 0.031±0.00
ENSMUSG00000097968 ENSMUST00000182471 N/A N/A N/A 0.018±0.00 N/A N/A N/A 0.103±0.03 0.009±0.00 N/A N/A 0.275±0.00 0.008±0.00 N/A

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