C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00028X_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000197980-ENSG00000163660 CGP 9606 3:156825481-157160760
GeneTranscriptPositionBiotype
ENSG00000163660 (CCNL1)
cyclin L1 		ENST00000295925 (CCNL1-201) 157157023-157160094 protein_coding
ENST00000295926 (CCNL1-001) 157147553-157160213 protein_coding
ENST00000461804 (CCNL1-002) 157146508-157160760 protein_coding
ENST00000464316 (CCNL1-006) 157147795-157154666 retained_intron
ENST00000464575 (CCNL1-015) 157153042-157159255 retained_intron
ENST00000464679 (CCNL1-019) 157149444-157152210 retained_intron
ENST00000465947 (CCNL1-012) 157152177-157160136 nonsense_mediated_decay
ENST00000466101 (CCNL1-011) 157158915-157160137 retained_intron
ENST00000467081 (CCNL1-014) 157152740-157159441 retained_intron
ENST00000467849 (CCNL1-022) 157148949-157149633 retained_intron
ENST00000468977 (CCNL1-020) 157148316-157150074 nonsense_mediated_decay
ENST00000470121 (CCNL1-005) 157148241-157160094 nonsense_mediated_decay
ENST00000471044 (CCNL1-010) 157158665-157160158 retained_intron
ENST00000471247 (CCNL1-008) 157147796-157152501 retained_intron
ENST00000474539 (CCNL1-007) 157147796-157153828 retained_intron
ENST00000475298 (CCNL1-003) 157147796-157160155 nonsense_mediated_decay
ENST00000476367 (CCNL1-004) 157149005-157160110 retained_intron
ENST00000476744 (CCNL1-021) 157148121-157149945 retained_intron
ENST00000477127 (CCNL1-009) 157149287-157160178 nonsense_mediated_decay
ENST00000478454 (CCNL1-016) 157152017-157158951 retained_intron
ENST00000479052 (CCNL1-017) 157150128-157153628 processed_transcript
ENST00000479596 (CCNL1-013) 157152082-157160135 retained_intron
ENST00000481173 (CCNL1-024) 157149947-157150629 retained_intron
ENST00000483789 (CCNL1-018) 157151400-157153106 retained_intron
ENST00000495471 (CCNL1-023) 157149941-157150799 retained_intron
ENSG00000197980 (LEKR1)
leucine, glutamate and lysine rich 1 		ENST00000356539 (LEKR1-201) 156826307-157046129 protein_coding
ENST00000465728 (LEKR1-008) 156825481-156852840 processed_transcript
ENST00000467376 (LEKR1-007) 156826334-156921039 retained_intron
ENST00000470811 (LEKR1-010) 156826307-157046129 protein_coding
ENST00000477399 (LEKR1-002) 156826314-156924625 protein_coding
ENST00000483177 (LEKR1-001) 156826311-156888469 protein_coding
ENST00000485017 (LEKR1-005) 156826682-156852973 processed_transcript
ENST00000489350 (LEKR1-006) 156826329-156979558 processed_transcript
ENST00000491763 (LEKR1-004) 156826359-156925256 protein_coding
ENST00000495252 (LEKR1-009) 156920667-156942797 retained_intron
ENST00000498839 (LEKR1-003) 156826300-156853214 protein_coding
ENSG00000222499 (RN7SKP177)
RNA, 7SK small nuclear pseudogene 177 		ENST00000410567 (RN7SKP177-201) 157017342-157017696 misc_RNA
ENSG00000239706 (RP11-6F2.3)
 ENST00000487061 (RP11-6F2.3-001) 156988117-156988712 processed_pseudogene
ENSG00000241544 (RP11-6F2.5)
 ENST00000469196 (RP11-6F2.5-001) 157081841-157088547 lincRNA
ENSG00000243629 (LINC00880)
long intergenic non-protein coding RNA 880 		ENST00000471357 (LINC00880-001) 157081667-157123004 lincRNA
CIL_00028X_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000074579-ENSMUSG00000027829 CGP 10090 3:65666228-65958249
GeneTranscriptPositionBiotype
ENSMUSG00000027829 (Ccnl1)
cyclin L1 		ENSMUST00000029416 (Ccnl1-001) 65946151-65958249 protein_coding
ENSMUST00000122919 (Ccnl1-004) 65946151-65958199 retained_intron
ENSMUST00000129002 (Ccnl1-002) 65946151-65958162 nonsense_mediated_decay
ENSMUST00000132998 (Ccnl1-012) 65950407-65951868 retained_intron
ENSMUST00000135719 (Ccnl1-003) 65946195-65958032 nonsense_mediated_decay
ENSMUST00000142153 (Ccnl1-005) 65946509-65958163 retained_intron
ENSMUST00000144810 (Ccnl1-009) 65947954-65956856 nonsense_mediated_decay
ENSMUST00000145186 (Ccnl1-010) 65949901-65956889 nonsense_mediated_decay
ENSMUST00000146284 (Ccnl1-011) 65951249-65952993 retained_intron
ENSMUST00000148623 (Ccnl1-008) 65951434-65957653 retained_intron
ENSMUST00000149160 (Ccnl1-006) 65948892-65958181 retained_intron
ENSMUST00000149729 (Ccnl1-014) 65946782-65947998 retained_intron
ENSMUST00000150304 (Ccnl1-013) 65948508-65950978 retained_intron
ENSMUST00000154585 (Ccnl1-007) 65946151-65958169 nonsense_mediated_decay
ENSMUSG00000074579 (Lekr1)
leucine, glutamate and lysine rich 1 		ENSMUST00000099075 (Lekr1-001) 65666228-65686179 protein_coding
ENSMUST00000107848 (Lekr1-002) 65666235-65684224 protein_coding
ENSMUST00000161534 (Lekr1-003) 65666282-65773285 protein_coding
ENSMUST00000161794 (Lekr1-004) 65666246-65739695 protein_coding
ENSMUST00000161851 (Lekr1-005) 65666317-65728551 protein_coding
ENSMUST00000177434 (Lekr1-006) 65684053-65831159 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00028X_0001ENSG00000163660ENST00000295925ENST00000295926ENST00000461804ENST00000464316ENST00000464679ENST00000467849ENST00000468977ENST00000470121ENST00000471044ENST00000471247ENST00000474539ENST00000475298ENST00000476744ENST00000479596ENSG00000197980ENST00000356539ENST00000465728ENST00000467376ENST00000470811ENST00000483177ENST00000485017ENST00000489350ENST00000491763ENST00000495252ENST00000498839ENSG00000222499ENST00000410567ENSG00000239706ENST00000487061ENSG00000241544ENST00000469196ENSG00000243629ENST00000471357CIL_00028X_0002ENSMUSG00000027829ENSMUST00000029416ENSMUST00000122919ENSMUST00000129002ENSMUST00000135719ENSMUST00000142153ENSMUST00000149160ENSMUST00000154585ENSMUSG00000074579ENSMUST00000099075ENSMUST00000107848ENSMUST00000161534ENSMUST00000161851ENSMUST00000177434
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163660 ENST00000295925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.736±0.00 N/A N/A N/A
ENST00000295926 N/A N/A N/A N/A N/A 2.832±0.00 N/A N/A N/A N/A N/A 10.781±0.73 2.737±0.09 1.800±0.00
ENST00000461804 N/A N/A N/A N/A N/A N/A N/A 3.345±0.00 N/A N/A N/A N/A N/A N/A
ENST00000464316 N/A 6.841±0.00 N/A N/A 2.988±0.00 N/A 0.813±0.00 N/A N/A 6.735±0.00 0.728±0.00 N/A N/A 0.798±0.00
ENST00000464575 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 52.495±0.00 21.167±0.00 31.055±0.00
ENST00000465947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 37.011±0.00 10.083±0.00 21.999±0.00
ENST00000468977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.454±0.00 14.139±0.00
ENST00000470121 N/A N/A N/A 3.019±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.985±0.00
ENST00000471044 N/A N/A N/A N/A N/A N/A 4.715±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000471247 N/A 9.396±0.00 N/A N/A 4.003±0.00 N/A 0.657±0.00 3.122±0.00 1.560±0.00 6.636±0.00 N/A 11.373±2.15 1.355±0.00 N/A
ENST00000474539 2.000±0.00 4.293±0.00 2.502±0.00 2.227±0.32 5.587±2.02 6.022±0.00 0.937±0.00 3.350±0.00 0.846±0.00 7.923±4.20 1.597±0.00 4.583±1.29 0.723±0.00 0.616±0.00
ENST00000475298 5.265±0.00 11.992±0.00 N/A 3.299±0.00 6.276±0.00 4.178±0.00 2.761±0.00 9.201±0.00 6.196±0.00 18.055±0.00 4.398±0.00 24.764±0.00 3.840±0.23 4.126±0.00
ENST00000476367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476744 N/A N/A N/A N/A N/A N/A N/A 3.575±0.00 N/A N/A N/A 30.727±0.00 N/A N/A
ENST00000477127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.490±0.00 N/A N/A N/A
ENST00000481173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000197980 ENST00000356539 N/A N/A 0.012±0.00 0.016±0.00 0.027±0.00 N/A N/A N/A N/A N/A N/A 0.027±0.01 0.015±0.00 5.053±0.00
ENST00000465728 N/A N/A N/A N/A N/A N/A N/A 0.182±0.00 N/A N/A N/A 0.940±0.00 N/A N/A
ENST00000467376 N/A N/A N/A 0.234±0.00 N/A N/A N/A N/A N/A N/A N/A 0.564±0.00 N/A N/A
ENST00000470811 0.004±0.00 N/A N/A N/A N/A 0.003±0.00 N/A 0.013±0.00 N/A 0.028±0.00 N/A 0.035±0.00 N/A 0.748±0.00
ENST00000477399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483177 0.036±0.00 N/A N/A N/A N/A N/A N/A N/A 0.234±0.00 0.216±0.00 N/A 0.178±0.04 N/A N/A
ENST00000485017 0.018±0.00 N/A 0.163±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.739±0.00
ENST00000489350 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.032±0.00 0.114±0.00 N/A N/A
ENST00000491763 0.007±0.00 0.231±0.00 0.056±0.00 N/A 0.350±0.19 0.097±0.07 0.060±0.01 0.214±0.10 0.097±0.00 0.069±0.00 N/A 0.144±0.08 0.111±0.00 0.803±0.00
ENST00000495252 N/A N/A 0.296±0.00 N/A N/A N/A N/A N/A 0.126±0.00 1.484±0.00 N/A N/A N/A N/A
ENST00000498839 N/A N/A N/A N/A N/A N/A 0.236±0.00 N/A N/A 1.224±0.00 N/A N/A N/A N/A
ENSG00000222499 ENST00000410567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.102±0.00 N/A 1.347±0.00
ENSG00000239706 ENST00000487061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.249±0.00
ENSG00000241544 ENST00000469196 0.042±0.00 N/A N/A 0.411±0.00 0.072±0.01 0.162±0.00 0.089±0.00 0.022±0.00 0.066±0.00 N/A N/A 0.071±0.04 0.075±0.03 2.641±0.56
ENSG00000243629 ENST00000471357 0.008±0.00 0.016±0.00 N/A 0.145±0.00 0.025±0.00 N/A 0.023±0.00 0.050±0.00 0.092±0.08 0.015±0.00 N/A 0.038±0.00 0.020±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027829 ENSMUST00000029416 8.797±2.53 53.428±13.54 11.047±0.41 18.607±4.32 55.298±33.64 41.023±9.11 2.390±1.00 7.309±4.89 10.631±5.52 26.863±12.39 1.528±0.04 85.379±12.85 9.029±1.11 9.453±3.25
ENSMUST00000122919 N/A N/A 4.262±0.00 3.981±1.30 N/A N/A N/A N/A 4.389±1.27 N/A 0.607±0.03 N/A N/A N/A
ENSMUST00000129002 4.699±0.38 N/A 8.872±1.93 5.404±0.00 5.295±1.21 N/A 1.778±0.14 2.325±0.49 7.600±3.17 4.962±0.00 1.648±0.56 8.643±0.17 6.316±1.03 3.490±0.49
ENSMUST00000132998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135719 N/A N/A N/A 4.781±0.00 6.797±0.00 N/A 1.973±0.88 2.229±0.00 N/A N/A 2.216±0.55 21.010±10.55 10.004±3.94 5.146±0.92
ENSMUST00000142153 4.976±0.73 N/A 6.102±1.16 4.216±0.00 4.586±1.27 N/A 1.568±0.68 2.203±0.22 4.006±2.00 7.401±0.72 1.404±0.09 7.928±3.62 5.059±1.64 1.185±0.00
ENSMUST00000144810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146284 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149160 4.111±1.32 54.075±19.30 N/A 2.536±0.00 34.385±5.24 8.478±1.20 1.081±0.23 N/A 2.684±0.86 10.135±3.71 N/A 44.600±15.70 N/A N/A
ENSMUST00000149729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154585 N/A N/A N/A N/A 4.554±0.00 N/A 1.716±0.00 1.812±0.00 N/A N/A N/A N/A N/A N/A
ENSMUSG00000074579 ENSMUST00000099075 0.729±0.17 0.194±0.05 1.964±0.40 1.487±0.94 0.361±0.25 0.275±0.16 0.565±0.07 0.958±0.37 0.396±0.21 0.648±0.19 0.090±0.03 1.003±0.41 0.376±0.21 1.123±0.17
ENSMUST00000107848 N/A 0.171±0.00 N/A 11.017±0.00 0.607±0.00 0.204±0.00 N/A 0.547±0.00 N/A N/A 0.102±0.00 18.272±0.00 6.894±4.43 87.181±0.00
ENSMUST00000161534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.144±0.01 N/A N/A
ENSMUST00000161794 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161851 N/A 0.123±0.05 N/A N/A N/A N/A N/A N/A N/A 0.175±0.01 N/A 0.145±0.00 N/A N/A
ENSMUST00000177434 0.175±0.00 N/A N/A N/A N/A 0.076±0.00 N/A 0.203±0.00 N/A N/A 0.028±0.01 0.277±0.17 0.170±0.00 3.695±3.98

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