C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002AU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000155744-ENSG00000119013 CGP 9606 2:200973718-201085750
GeneTranscriptPositionBiotype
ENSG00000119013 (NDUFB3)
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa 		ENST00000237889 (NDUFB3-001) 201071739-201085750 protein_coding
ENST00000433898 (NDUFB3-003) 201072008-201085744 protein_coding
ENST00000450023 (NDUFB3-002) 201071433-201085513 protein_coding
ENST00000454214 (NDUFB3-004) 201072030-201085750 protein_coding
ENSG00000155744 (FAM126B)
family with sequence similarity 126, member B 		ENST00000286181 (FAM126B-002) 200978493-201071665 nonsense_mediated_decay
ENST00000418596 (FAM126B-001) 200973718-201071669 protein_coding
ENST00000446678 (FAM126B-008) 201017127-201071653 protein_coding
ENST00000452799 (FAM126B-006) 200997445-201071645 protein_coding
ENST00000453765 (FAM126B-007) 201017062-201071579 protein_coding
ENST00000474118 (FAM126B-009) 201022481-201071628 retained_intron
ENST00000485144 (FAM126B-005) 201021448-201022884 processed_transcript
ENST00000485636 (FAM126B-010) 201022546-201071671 retained_intron
ENST00000490725 (FAM126B-003) 200996050-201009452 retained_intron
ENST00000494881 (FAM126B-011) 201023616-201045557 retained_intron
ENST00000498780 (FAM126B-004) 200996050-201071669 retained_intron
ENSG00000225695 (HNRNPA1P35)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 35 		ENST00000429216 (HNRNPA1P35-001) 201063089-201064051 processed_pseudogene
ENSG00000226658 (AC005037.4)
 ENST00000432419 (AC005037.4-001) 201066691-201067191 processed_pseudogene
ENSG00000252148 (RNU6-1206P)
RNA, U6 small nuclear 1206, pseudogene 		ENST00000516339 (RNU6-1206P-201) 201079842-201079944 snRNA
CIL_0002AU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038174-ENSMUSG00000026032 CGP 10090 1:58522806-58595964
GeneTranscriptPositionBiotype
ENSMUSG00000026032 (Ndufb3)
NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3 		ENSMUST00000027193 (Ndufb3-001) 58586384-58595964 protein_coding
ENSMUSG00000038174 (Fam126b)
family with sequence similarity 126, member B 		ENSMUST00000038372 (Fam126b-003) 58529083-58586191 protein_coding
ENSMUST00000097724 (Fam126b-002) 58527021-58586266 protein_coding
ENSMUST00000159185 (Fam126b-004) 58565604-58586297 retained_intron
ENSMUST00000159980 (Fam126b-005) 58557360-58586277 retained_intron
ENSMUST00000160546 (Fam126b-006) 58557333-58586264 processed_transcript
ENSMUST00000161000 (Fam126b-007) 58552187-58586275 protein_coding
ENSMUST00000161600 (Fam126b-001) 58522806-58586323 protein_coding
ENSMUST00000187717 (Fam126b-009) 58527743-58565954 nonsense_mediated_decay
ENSMUST00000191472 (Fam126b-008) 58562431-58565220 retained_intron
ENSMUSG00000085054 (Gm15834)
predicted gene 15834 		ENSMUST00000129740 (Gm15834-002) 58505152-58517530 lincRNA
ENSMUST00000139825 (Gm15834-001) 58505155-58523230 lincRNA
ENSMUST00000160947 (Gm15834-003) 58505148-58512616 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002AU_0001ENSG00000119013ENST00000237889ENST00000433898ENST00000450023ENST00000454214ENSG00000155744ENST00000286181ENST00000418596ENST00000446678ENST00000452799ENST00000453765ENST00000474118ENST00000485144ENST00000485636ENST00000490725ENST00000494881ENST00000498780ENSG00000225695ENST00000429216ENSG00000226658ENST00000432419ENSG00000252148ENST00000516339CIL_0002AU_0002ENSMUSG00000026032ENSMUST00000027193ENSMUSG00000038174ENSMUST00000038372ENSMUST00000097724ENSMUST00000159185ENSMUST00000159980ENSMUST00000160546ENSMUST00000161000ENSMUST00000161600ENSMUST00000187717ENSMUST00000191472ENSMUSG00000085054ENSMUST00000129740ENSMUST00000139825ENSMUST00000160947
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002AU_0001ENSG00000119013ENST00000237889ENST00000433898ENST00000454214ENSG00000155744ENST00000286181ENST00000418596ENSG00000225695ENST00000429216ENSG00000226658ENST00000432419ENSG00000252148ENST00000516339CIL_0002AU_0002ENSMUSG00000026032ENSMUST00000027193ENSMUSG00000038174ENSMUST00000038372ENSMUST00000097724ENSMUST00000161600ENSMUST00000187717ENSMUSG00000085054ENSMUST00000129740ENSMUST00000139825
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000119013 ENST00000237889 N/A N/A N/A 22.235±0.00 18.340±0.00 15.814±0.00 21.103±8.69 N/A 6.058±0.00 N/A 8.187±0.78 72.675±0.00 11.254±5.39 31.145±11.61
ENST00000433898 N/A 34.420±0.00 N/A 53.225±0.00 30.981±0.00 29.195±0.00 61.952±49.05 58.385±0.00 18.632±0.00 20.796±0.00 9.502±0.00 45.293±0.00 22.992±3.78 39.557±0.00
ENST00000450023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454214 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 85.935±0.00 37.219±0.00 N/A
ENSG00000155744 ENST00000286181 N/A N/A 1.206±0.00 N/A 1.643±0.00 2.666±0.00 1.406±0.00 N/A 2.306±0.00 2.274±0.00 0.733±0.00 2.617±0.00 N/A N/A
ENST00000418596 2.145±0.00 1.349±0.00 N/A 3.381±0.00 2.123±0.00 N/A 1.140±0.00 N/A 0.423±0.00 2.169±0.00 0.631±0.00 2.563±1.37 1.161±0.76 2.496±1.39
ENST00000446678 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453765 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485144 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225695 ENST00000429216 0.236±0.00 0.512±0.00 N/A 0.191±0.06 0.180±0.02 0.320±0.20 0.108±0.01 0.111±0.04 0.108±0.04 0.104±0.04 0.090±0.00 0.201±0.16 0.032±0.01 0.054±0.00
ENSG00000226658 ENST00000432419 N/A 0.163±0.00 N/A 0.027±0.00 0.107±0.00 0.078±0.00 0.048±0.00 0.081±0.00 N/A N/A N/A 0.117±0.05 N/A N/A
ENSG00000252148 ENST00000516339 N/A 0.173±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026032 ENSMUST00000027193 85.901±30.33 13.081±3.36 84.570±14.82 70.010±41.49 45.113±17.61 20.786±2.03 135.143±10.95 96.676±21.05 59.415±24.10 30.711±8.31 89.065±9.53 28.463±31.64 58.286±27.29 33.459±11.11
ENSMUSG00000038174 ENSMUST00000038372 2.004±0.58 0.536±0.17 N/A N/A 2.336±1.17 0.899±0.00 0.388±0.10 1.217±0.40 0.897±0.19 0.707±0.00 N/A 0.984±0.23 N/A 1.557±0.79
ENSMUST00000097724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.455±0.00 N/A N/A
ENSMUST00000159185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159980 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161000 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161600 1.085±0.00 0.812±0.39 2.528±1.41 2.401±0.26 1.033±0.09 0.534±0.17 0.216±0.02 1.761±0.50 0.866±0.33 1.226±0.34 0.418±0.29 0.971±0.18 1.242±0.65 0.470±0.21
ENSMUST00000187717 0.767±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.844±0.00 N/A 0.800±0.36 N/A 0.321±0.07
ENSMUST00000191472 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085054 ENSMUST00000129740 N/A 0.320±0.05 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.555±0.00 N/A N/A
ENSMUST00000139825 N/A 0.338±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.332±0.00 N/A N/A
ENSMUST00000160947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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