C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002B8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000076624-ENSDARG00000086462 CGP 7955 4:59499479-59639641
GeneTranscriptPositionBiotype
ENSDARG00000076624 (ptprb)
protein tyrosine phosphatase, receptor type, b 		ENSDART00000110037 (ptprb-201) 59505313-59513238 protein_coding
ENSDART00000127299 (ptprb-202) 59499479-59598537 protein_coding
ENSDARG00000086462 (PTPRR)
protein tyrosine phosphatase, receptor type, R 		ENSDART00000123045 (PTPRR-201) 59603883-59639641 protein_coding
CIL_0002B8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000127329-ENSG00000153233 CGP 9606 12:70515866-70920843
GeneTranscriptPositionBiotype
ENSG00000127329 (PTPRB)
protein tyrosine phosphatase, receptor type, B 		ENST00000261266 (PTPRB-007) 70521403-70609844 protein_coding
ENST00000334414 (PTPRB-001) 70515866-70637440 protein_coding
ENST00000451516 (PTPRB-201) 70521317-70637421 protein_coding
ENST00000538174 (PTPRB-005) 70584965-70637414 processed_transcript
ENST00000538708 (PTPRB-008) 70521403-70609843 protein_coding
ENST00000547715 (PTPRB-010) 70608729-70609788 protein_coding
ENST00000548122 (PTPRB-006) 70559473-70637411 protein_coding
ENST00000549400 (PTPRB-011) 70539414-70540059 retained_intron
ENST00000550358 (PTPRB-003) 70521316-70637421 protein_coding
ENST00000550857 (PTPRB-009) 70521403-70609843 protein_coding
ENST00000551525 (PTPRB-004) 70558788-70637420 protein_coding
ENST00000552253 (PTPRB-002) 70591734-70637440 retained_intron
ENSG00000153233 (PTPRR)
protein tyrosine phosphatase, receptor type, R 		ENST00000283228 (PTPRR-001) 70638082-70920843 protein_coding
ENST00000342084 (PTPRR-002) 70638931-70788982 protein_coding
ENST00000378778 (PTPRR-201) 70638074-70754759 protein_coding
ENST00000440835 (PTPRR-005) 70638073-70754661 protein_coding
ENST00000537619 (PTPRR-007) 70638079-70664677 processed_transcript
ENST00000547752 (PTPRR-008) 70638082-70664372 processed_transcript
ENST00000548220 (PTPRR-003) 70660990-70754759 processed_transcript
ENST00000549107 (PTPRR-010) 70639130-70684896 processed_transcript
ENST00000549308 (PTPRR-004) 70639060-70754716 protein_coding
ENST00000550661 (PTPRR-009) 70684732-70754735 protein_coding
ENST00000551219 (PTPRR-006) 70638079-70754591 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002B8_0001ENSDARG00000076624ENSDART00000110037ENSDART00000127299ENSDARG00000086462ENSDART00000123045CIL_0002B8_0002ENSG00000127329ENST00000261266ENST00000334414ENST00000451516ENST00000538174ENST00000538708ENST00000547715ENST00000548122ENST00000549400ENST00000550358ENST00000550857ENST00000551525ENST00000552253ENSG00000153233ENST00000283228ENST00000342084ENST00000378778ENST00000440835ENST00000537619ENST00000547752ENST00000548220ENST00000549107ENST00000549308ENST00000550661ENST00000551219
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002B8_0001ENSDARG00000076624ENSDART00000110037ENSDART00000127299ENSDARG00000086462ENSDART00000123045CIL_0002B8_0002ENSG00000127329ENST00000261266ENST00000334414ENST00000451516ENST00000538174ENST00000538708ENST00000548122ENST00000550358ENST00000550857ENSG00000153233ENST00000283228ENST00000342084ENST00000378778ENST00000440835ENST00000537619ENST00000547752ENST00000549107ENST00000549308ENST00000550661ENST00000551219
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000076624 ENSDART00000110037 N/A N/A N/A N/A N/A N/A 27.886±0.00 11.971±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000127299 N/A N/A N/A 5.826±1.67 N/A N/A 16.651±6.90 15.889±8.75 1.018±0.00 N/A 10.627±0.00 N/A N/A N/A
ENSDARG00000086462 ENSDART00000123045 N/A N/A N/A 2.056±1.37 N/A N/A 0.708±0.29 5.688±0.00 0.150±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000127329 ENST00000261266 9.143±0.00 2.850±0.00 N/A 0.764±0.05 3.180±0.69 2.632±0.00 4.756±3.33 6.515±0.00 4.807±0.00 N/A N/A 1.171±0.22 6.638±3.38 0.574±0.00
ENST00000334414 N/A N/A N/A N/A 0.878±0.00 N/A N/A N/A 0.425±0.00 9.370±0.00 0.348±0.00 1.324±0.00 N/A N/A
ENST00000451516 N/A N/A N/A N/A N/A N/A N/A 1.194±0.00 0.645±0.00 3.302±0.00 N/A N/A N/A N/A
ENST00000538174 N/A N/A 4.508±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538708 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.978±0.00 0.695±0.27 N/A 3.012±0.00 N/A
ENST00000547715 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548122 N/A N/A N/A N/A N/A 1.875±0.00 N/A N/A 1.202±0.00 N/A N/A 1.101±0.00 N/A N/A
ENST00000549400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550358 N/A N/A N/A N/A N/A 1.716±0.00 N/A 1.156±0.00 N/A N/A N/A N/A N/A N/A
ENST00000550857 N/A 2.609±0.00 N/A 1.224±0.00 2.061±0.00 2.839±0.00 N/A 5.846±0.00 N/A 5.819±0.00 1.120±0.00 N/A N/A 2.294±0.00
ENST00000551525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552253 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000153233 ENST00000283228 N/A N/A N/A 4.773±1.90 N/A 0.215±0.03 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000342084 N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A 2.088±0.07 N/A N/A
ENST00000378778 0.044±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.681±0.00 0.173±0.09 N/A
ENST00000440835 N/A N/A N/A N/A N/A 0.772±0.00 N/A N/A 0.154±0.00 N/A N/A 1.425±0.08 0.194±0.00 N/A
ENST00000537619 N/A 0.071±0.00 N/A N/A 0.108±0.00 0.716±0.00 N/A N/A N/A N/A N/A 0.803±0.74 0.076±0.00 N/A
ENST00000547752 N/A N/A N/A N/A 0.039±0.00 N/A 0.041±0.03 0.019±0.00 0.337±0.00 0.160±0.00 N/A 0.291±0.00 0.151±0.02 0.073±0.00
ENST00000548220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549107 0.213±0.00 N/A 0.577±0.00 N/A N/A N/A N/A 0.106±0.00 0.727±0.00 N/A N/A N/A 0.202±0.08 0.038±0.00
ENST00000549308 N/A N/A N/A N/A 0.594±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550661 N/A N/A N/A N/A N/A N/A N/A N/A 0.698±0.00 N/A 0.040±0.00 1.499±0.00 N/A N/A
ENST00000551219 N/A N/A N/A N/A 0.124±0.00 N/A 0.027±0.00 N/A N/A N/A N/A N/A N/A N/A

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