C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002C0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000008880-ENSDARG00000061749 CGP 7955 21:22165897-22246582
GeneTranscriptPositionBiotype
ENSDARG00000008880 (usp28)
ubiquitin specific peptidase 28 		ENSDART00000003076 (usp28-201) 22165897-22225756 protein_coding
ENSDART00000147896 (usp28-001) 22165897-22225823 protein_coding
ENSDARG00000061749 (htr3b)
5-hydroxytryptamine (serotonin) receptor 3B 		ENSDART00000088452 (htr3b-201) 22227511-22246582 protein_coding
ENSDART00000088459 (htr3b-202) 22227022-22246582 protein_coding
ENSDART00000134019 (htr3b-001) 22227526-22241324 protein_coding
CIL_0002C0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000048028-ENSG00000149305 CGP 9606 11:113797874-113946565
GeneTranscriptPositionBiotype
ENSG00000048028 (USP28)
ubiquitin specific peptidase 28 		ENST00000003302 (USP28-001) 113797874-113875570 protein_coding
ENST00000535607 (USP28-011) 113817706-113833517 nonsense_mediated_decay
ENST00000537490 (USP28-013) 113817831-113830976 nonsense_mediated_decay
ENST00000537642 (USP28-009) 113829221-113875496 protein_coding
ENST00000537706 (USP28-002) 113813755-113875528 protein_coding
ENST00000538224 (USP28-014) 113804928-113809175 protein_coding
ENST00000538475 (USP28-012) 113812279-113833470 protein_coding
ENST00000540438 (USP28-005) 113799062-113875566 nonsense_mediated_decay
ENST00000540925 (USP28-007) 113852527-113875536 protein_coding
ENST00000542033 (USP28-003) 113830883-113875533 processed_transcript
ENST00000544272 (USP28-015) 113798979-113801701 retained_intron
ENST00000544750 (USP28-008) 113852622-113875533 protein_coding
ENST00000544967 (USP28-006) 113798092-113829467 protein_coding
ENST00000545540 (USP28-004) 113798805-113875570 protein_coding
ENST00000545608 (USP28-010) 113815264-113833552 nonsense_mediated_decay
ENSG00000149305 (HTR3B)
5-hydroxytryptamine (serotonin) receptor 3B, ionotropic 		ENST00000260191 (HTR3B-001) 113904677-113946565 protein_coding
ENST00000537778 (HTR3B-002) 113908992-113946252 protein_coding
ENST00000543092 (HTR3B-003) 113931385-113944702 protein_coding
ENSG00000201687 (RNU6-1107P)
RNA, U6 small nuclear 1107, pseudogene 		ENST00000364817 (RNU6-1107P-201) 113859346-113859449 snRNA
ENSG00000255710 (RP11-667M19.9)
 ENST00000536944 (RP11-667M19.9-001) 113820856-113821885 processed_pseudogene
ENSG00000256452 (RP11-667M19.10)
 ENST00000399123 (RP11-667M19.10-001) 113818077-113822458 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002C0_0001ENSDARG00000008880ENSDART00000003076ENSDART00000147896ENSDARG00000061749ENSDART00000088452ENSDART00000088459ENSDART00000134019CIL_0002C0_0002ENSG00000048028ENST00000003302ENST00000535607ENST00000537490ENST00000537642ENST00000537706ENST00000538224ENST00000538475ENST00000540438ENST00000540925ENST00000542033ENST00000544272ENST00000544750ENST00000544967ENST00000545540ENST00000545608ENSG00000149305ENST00000260191ENST00000537778ENST00000543092ENSG00000201687ENST00000364817ENSG00000255710ENST00000536944ENSG00000256452ENST00000399123
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002C0_0001ENSDARG00000008880ENSDART00000003076ENSDART00000147896ENSDARG00000061749ENSDART00000088452ENSDART00000088459CIL_0002C0_0002ENSG00000048028ENST00000003302ENST00000537706ENST00000540438ENST00000542033ENST00000544272ENST00000544967ENST00000545540ENSG00000149305ENST00000260191ENST00000537778ENST00000543092ENSG00000201687ENST00000364817ENSG00000255710ENST00000536944ENSG00000256452ENST00000399123
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000008880 ENSDART00000003076 N/A N/A N/A 0.156±0.05 N/A N/A 82.352±3.94 3.084±0.00 0.128±0.00 N/A 36.963±0.00 N/A N/A N/A
ENSDART00000147896 N/A N/A N/A 0.069±0.00 N/A N/A 8.742±5.56 1.228±0.17 N/A N/A 7.585±0.00 N/A N/A N/A
ENSDARG00000061749 ENSDART00000088452 N/A N/A N/A 0.046±0.00 N/A N/A 0.046±0.00 N/A 0.039±0.00 N/A N/A N/A N/A N/A
ENSDART00000088459 N/A N/A N/A N/A N/A N/A 0.045±0.00 0.151±0.00 N/A N/A 0.100±0.00 N/A N/A N/A
ENSDART00000134019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000048028 ENST00000003302 N/A N/A N/A N/A 0.545±0.00 1.130±0.00 7.443±5.71 N/A 1.075±0.00 N/A 12.752±0.00 2.767±0.00 0.478±0.00 1.167±0.00
ENST00000535607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537706 N/A N/A N/A 0.920±0.00 1.825±0.00 1.009±0.00 3.928±0.00 N/A N/A 1.946±0.00 N/A 1.337±0.00 N/A N/A
ENST00000538224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.806±0.00 N/A N/A
ENST00000540925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542033 N/A N/A N/A 2.952±0.00 5.164±0.00 2.842±0.00 12.424±0.00 1.548±0.00 6.089±0.00 3.745±0.00 11.013±0.00 5.818±0.00 N/A N/A
ENST00000544272 N/A N/A 4.393±0.00 N/A N/A N/A N/A 3.200±0.00 N/A N/A N/A N/A N/A N/A
ENST00000544750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544967 0.846±0.00 1.675±0.00 0.379±0.00 0.659±0.32 1.427±0.54 2.784±0.00 5.425±0.00 1.757±0.00 0.840±0.10 1.388±0.16 5.004±0.00 3.344±1.00 1.197±0.28 4.151±0.42
ENST00000545540 N/A N/A N/A 0.299±0.00 N/A N/A 3.847±0.00 0.929±0.00 1.034±0.00 N/A N/A 1.421±0.24 0.601±0.24 1.143±0.00
ENST00000545608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000149305 ENST00000260191 0.022±0.00 N/A N/A N/A N/A 0.056±0.00 N/A 0.052±0.00 0.026±0.00 0.157±0.00 0.006±0.00 0.038±0.02 N/A 0.150±0.00
ENST00000537778 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.134±0.00
ENST00000543092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.317±0.00
ENSG00000201687 ENST00000364817 N/A N/A N/A 0.722±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000255710 ENST00000536944 0.030±0.00 0.300±0.00 0.151±0.00 0.322±0.00 0.085±0.00 0.137±0.11 0.503±0.09 N/A N/A N/A 0.098±0.00 0.083±0.02 N/A 0.224±0.15
ENSG00000256452 ENST00000399123 N/A 0.287±0.00 N/A 0.472±0.00 0.128±0.00 0.343±0.00 0.070±0.00 N/A 0.179±0.00 N/A 0.449±0.00 N/A N/A 1.331±0.00

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