C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002C7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000041720-ENSDARG00000008979 CGP 7955 8:43492486-43557865
GeneTranscriptPositionBiotype
ENSDARG00000041720 (arpc5la)
actin related protein 2/3 complex, subunit 5-like, a 		ENSDART00000061144 (arpc5la-001) 43492486-43501527 protein_coding
ENSDART00000061146 (arpc5la-201) 43492733-43501528 protein_coding
CIL_0002C7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136950-ENSG00000136935 CGP 9606 9:124862130-124948492
GeneTranscriptPositionBiotype
ENSG00000136950 (ARPC5L)
actin related protein 2/3 complex, subunit 5-like 		ENST00000259477 (ARPC5L-001) 124869205-124877717 protein_coding
ENST00000353214 (ARPC5L-002) 124862130-124877733 protein_coding
ENST00000465124 (ARPC5L-003) 124872589-124877401 processed_transcript
ENSG00000173611 (SCAI)
suppressor of cancer cell invasion 		ENST00000336505 (SCAI-001) 124942608-125143496 protein_coding
ENST00000373549 (SCAI-003) 124952788-125143496 protein_coding
ENST00000467917 (SCAI-006) 124952869-124999923 nonsense_mediated_decay
ENST00000468569 (SCAI-005) 125142254-125143506 retained_intron
ENST00000477186 (SCAI-004) 124952788-125143487 nonsense_mediated_decay
ENST00000487795 (SCAI-002) 124999911-125003690 processed_transcript
ENST00000494102 (SCAI-007) 124971258-124976186 nonsense_mediated_decay
ENSG00000199313 (RNU4-82P)
RNA, U4 small nuclear 82, pseudogene 		ENST00000362443 (RNU4-82P-201) 124887410-124887549 snRNA
ENSG00000264641 (AL354928.1)
 ENST00000580940 (AL354928.1-201) 124896833-124896932 miRNA
CIL_0002C7_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026755-ENSMUSG00000026754 CGP 10090 2:39008076-39065541
GeneTranscriptPositionBiotype
ENSMUSG00000026754 (Golga1)
golgi autoantigen, golgin subfamily a, 1 		ENSMUST00000039165 (Golga1-001) 39016261-39065541 protein_coding
ENSMUST00000112850 (Golga1-003) 39016261-39065488 protein_coding
ENSMUST00000124463 (Golga1-008) 39016779-39018406 processed_transcript
ENSMUST00000126520 (Golga1-004) 39022712-39065488 processed_transcript
ENSMUST00000136261 (Golga1-005) 39047072-39065485 processed_transcript
ENSMUST00000149810 (Golga1-007) 39047021-39056117 processed_transcript
ENSMUST00000149842 (Golga1-009) 39018154-39019241 processed_transcript
ENSMUST00000153914 (Golga1-006) 39016503-39053008 processed_transcript
ENSMUST00000154210 (Golga1-010) 39017813-39019561 processed_transcript
ENSMUST00000184996 (Golga1-002) 39017653-39065488 nonsense_mediated_decay
ENSMUSG00000026755 (Arpc5l)
actin related protein 2/3 complex, subunit 5-like 		ENSMUST00000090993 (Arpc5l-201) 39008139-39015872 protein_coding
ENSMUST00000112862 (Arpc5l-001) 39008076-39015877 protein_coding
ENSMUST00000135049 (Arpc5l-003) 39010018-39015877 processed_transcript
ENSMUST00000141467 (Arpc5l-002) 39008141-39015877 processed_transcript
ENSMUSG00000065127 (Gm26127)
predicted gene, 26127 		ENSMUST00000083193 (Gm26127-201) 39027777-39027883 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002C7_0001ENSDARG00000041720ENSDART00000061144ENSDART00000061146CIL_0002C7_0002ENSG00000136950ENST00000259477ENST00000353214ENST00000465124ENSG00000173611ENST00000336505ENST00000373549ENST00000467917ENST00000468569ENST00000477186ENST00000487795ENST00000494102ENSG00000199313ENST00000362443ENSG00000264641ENST00000580940CIL_0002C7_0003ENSMUSG00000026754ENSMUST00000039165ENSMUST00000112850ENSMUST00000124463ENSMUST00000126520ENSMUST00000136261ENSMUST00000149810ENSMUST00000149842ENSMUST00000153914ENSMUST00000154210ENSMUST00000184996ENSMUSG00000026755ENSMUST00000090993ENSMUST00000112862ENSMUST00000135049ENSMUST00000141467ENSMUSG00000065127ENSMUST00000083193
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002C7_0001ENSDARG00000041720ENSDART00000061144ENSDART00000061146CIL_0002C7_0002ENSG00000136950ENST00000259477ENST00000353214ENST00000465124ENSG00000173611ENST00000336505ENST00000373549ENSG00000199313ENST00000362443ENSG00000264641ENST00000580940CIL_0002C7_0003ENSMUSG00000026754ENSMUST00000039165ENSMUST00000126520ENSMUST00000153914ENSMUST00000184996ENSMUSG00000026755ENSMUST00000090993ENSMUST00000112862ENSMUST00000135049ENSMUST00000141467ENSMUSG00000065127ENSMUST00000083193
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000041720 ENSDART00000061144 N/A N/A N/A 12.297±9.20 N/A N/A 4.133±4.07 2.312±2.81 1.665±0.00 N/A 3.513±0.00 N/A N/A N/A
ENSDART00000061146 N/A N/A N/A 1.498±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136950 ENST00000259477 17.491±0.00 37.180±0.00 1.356±0.00 22.558±18.59 18.517±0.00 9.759±8.16 18.561±0.00 13.141±12.49 17.744±0.00 20.458±20.34 7.172±5.58 35.257±38.60 40.334±14.63 71.257±27.44
ENST00000353214 N/A N/A N/A 0.582±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465124 N/A 7.308±0.00 N/A 0.539±0.00 1.064±0.00 0.576±0.00 N/A N/A N/A 0.105±0.00 N/A 0.616±0.00 N/A N/A
ENSG00000173611 ENST00000336505 0.297±0.00 N/A N/A 2.811±0.17 N/A 0.218±0.00 0.335±0.11 N/A 1.182±0.00 0.939±0.67 0.627±0.00 0.630±0.24 N/A N/A
ENST00000373549 N/A N/A 1.366±0.00 8.250±0.00 2.476±0.00 N/A 0.653±0.00 N/A N/A 3.128±0.00 0.723±0.00 N/A N/A N/A
ENST00000467917 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494102 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000199313 ENST00000362443 N/A N/A N/A N/A N/A N/A 0.127±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000264641 ENST00000580940 1.220±0.00 2.599±0.00 N/A N/A N/A N/A 1.238±0.00 1.044±0.00 N/A 0.828±0.00 0.487±0.00 N/A N/A 0.918±0.26
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026754 ENSMUST00000039165 1.518±0.56 2.297±0.09 2.703±0.75 3.324±0.12 1.115±0.38 2.491±0.69 1.001±0.29 1.245±0.36 1.160±0.36 1.205±0.30 1.105±0.37 2.351±0.67 1.559±0.50 2.512±0.80
ENSMUST00000112850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126520 N/A N/A N/A N/A N/A 2.294±0.00 N/A N/A 1.152±0.45 N/A N/A 3.164±0.70 2.747±1.08 N/A
ENSMUST00000136261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153914 4.594±0.36 3.407±0.32 3.513±2.50 8.653±4.83 3.399±1.15 3.155±1.14 1.927±0.54 3.740±0.95 2.007±0.75 3.275±0.94 1.080±0.34 3.811±1.59 2.442±1.14 3.672±0.30
ENSMUST00000154210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184996 N/A N/A N/A 7.454±0.00 N/A N/A N/A N/A N/A N/A N/A 14.632±0.00 13.086±0.44 18.907±0.00
ENSMUSG00000026755 ENSMUST00000090993 16.107±2.13 46.035±8.77 28.179±4.71 25.503±6.21 41.112±21.31 26.462±4.03 19.278±1.29 17.516±4.33 15.872±7.14 19.343±2.32 61.954±4.41 29.694±5.85 26.203±5.53 32.729±11.87
ENSMUST00000112862 3.869±0.00 16.585±0.66 4.280±0.00 4.489±0.00 N/A 11.214±1.79 4.948±0.80 5.620±1.89 4.249±2.19 3.013±0.00 9.632±1.26 7.288±0.00 4.062±0.23 32.084±6.08
ENSMUST00000135049 1.933±0.67 N/A 2.807±0.68 3.066±1.29 3.923±0.62 N/A 0.870±0.05 1.139±0.09 2.214±0.85 2.262±0.45 N/A 2.558±0.39 1.915±0.32 N/A
ENSMUST00000141467 N/A 15.661±2.24 N/A N/A 15.621±0.00 N/A N/A N/A 3.115±0.55 N/A N/A 4.668±0.00 4.715±0.00 N/A
ENSMUSG00000065127 ENSMUST00000083193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 205.353±0.00 N/A

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