C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002CM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000072042-ENSG00000139988 CGP 9606 14:67676801-67734452
GeneTranscriptPositionBiotype
ENSG00000072042 (RDH11)
retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 		ENST00000381346 (RDH11-001) 67676801-67695814 protein_coding
ENST00000428130 (RDH11-004) 67678034-67695733 protein_coding
ENST00000553384 (RDH11-003) 67677364-67695754 protein_coding
ENST00000553578 (RDH11-006) 67677393-67692851 retained_intron
ENST00000553816 (RDH11-012) 67684510-67695717 retained_intron
ENST00000554035 (RDH11-013) 67678087-67692483 protein_coding
ENST00000554731 (RDH11-009) 67678073-67695766 nonsense_mediated_decay
ENST00000556692 (RDH11-007) 67692416-67695793 retained_intron
ENST00000557273 (RDH11-011) 67685073-67695730 protein_coding
ENST00000557331 (RDH11-008) 67690275-67695774 nonsense_mediated_decay
ENST00000557726 (RDH11-010) 67685153-67695764 protein_coding
ENSG00000072121 (ZFYVE26)
zinc finger, FYVE domain containing 26 		ENST00000347230 (ZFYVE26-001) 67746520-67816589 protein_coding
ENST00000394455 (ZFYVE26-009) 67727374-67770477 retained_intron
ENST00000553399 (ZFYVE26-010) 67815529-67816590 retained_intron
ENST00000554523 (ZFYVE26-004) 67748229-67816587 retained_intron
ENST00000554557 (ZFYVE26-007) 67748033-67816580 nonsense_mediated_decay
ENST00000554783 (ZFYVE26-012) 67753711-67756421 retained_intron
ENST00000555452 (ZFYVE26-002) 67760782-67816587 protein_coding
ENST00000557204 (ZFYVE26-011) 67777584-67778327 retained_intron
ENST00000557306 (ZFYVE26-008) 67750473-67761491 protein_coding
ENST00000557366 (ZFYVE26-006) 67796221-67816585 retained_intron
ENST00000557407 (ZFYVE26-005) 67797320-67816585 retained_intron
ENSG00000139988 (RDH12)
retinol dehydrogenase 12 (all-trans/9-cis/11-cis) 		ENST00000267502 (RDH12-201) 67720842-67734450 protein_coding
ENST00000547463 (RDH12-003) 67717806-67720899 processed_transcript
ENST00000551171 (RDH12-001) 67701886-67734452 protein_coding
ENST00000552873 (RDH12-002) 67727164-67729746 retained_intron

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0002CM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000066441-ENSMUSG00000021123 CGP 10090 12:79174337-79222665
GeneTranscriptPositionBiotype
ENSMUSG00000021123 (Rdh12)
retinol dehydrogenase 12 		ENSMUST00000021548 (Rdh12-001) 79208914-79222665 protein_coding
ENSMUST00000122227 (Rdh12-003) 79208931-79222664 protein_coding
ENSMUST00000140823 (Rdh12-004) 79210661-79212755 protein_coding
ENSMUST00000151980 (Rdh12-002) 79208947-79222664 retained_intron
ENSMUSG00000066441 (Rdh11)
retinol dehydrogenase 11 		ENSMUST00000085254 (Rdh11-002) 79175551-79190961 protein_coding
ENSMUST00000159500 (Rdh11-003) 79176165-79191793 nonsense_mediated_decay
ENSMUST00000161204 (Rdh11-001) 79174337-79192293 protein_coding

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002CM_0001ENSG00000072042ENST00000381346ENST00000428130ENST00000553384ENST00000553578ENST00000553816ENST00000554035ENST00000554731ENST00000556692ENST00000557273ENST00000557331ENST00000557726ENSG00000072121ENST00000347230ENST00000394455ENST00000553399ENST00000554523ENST00000554557ENST00000554783ENST00000555452ENST00000557204ENST00000557306ENST00000557366ENST00000557407ENSG00000139988ENST00000267502ENST00000547463ENST00000551171ENST00000552873CIL_0002CM_0002ENSMUSG00000021123ENSMUST00000021548ENSMUST00000122227ENSMUST00000140823ENSMUST00000151980ENSMUSG00000066441ENSMUST00000085254ENSMUST00000159500ENSMUST00000161204
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002CM_0001ENSG00000072042ENST00000381346ENST00000553384ENST00000553578ENSG00000072121ENST00000347230ENST00000394455ENST00000554523ENST00000554557ENST00000555452ENST00000557407ENSG00000139988ENST00000267502CIL_0002CM_0002ENSMUSG00000021123ENSMUST00000021548ENSMUST00000122227ENSMUST00000140823ENSMUST00000151980ENSMUSG00000066441ENSMUST00000085254ENSMUST00000159500ENSMUST00000161204
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000072042 ENST00000381346 11.275±0.00 16.437±0.00 6.815±0.00 21.119±11.10 7.224±3.15 15.899±0.00 5.116±0.00 34.705±21.57 20.879±15.24 9.771±4.94 N/A 12.750±6.54 8.442±1.03 23.941±0.00
ENST00000428130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553384 N/A N/A N/A 9.969±0.00 5.143±0.00 N/A N/A 11.652±0.00 14.837±7.00 14.345±0.00 N/A 8.040±3.62 12.576±0.00 17.764±0.00
ENST00000553578 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.387±0.00 N/A N/A N/A N/A
ENST00000553816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556692 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000072121 ENST00000347230 1.447±0.00 1.037±0.00 0.941±0.00 1.034±0.19 1.367±0.42 1.055±0.62 1.390±1.12 0.559±0.00 0.927±0.28 1.420±0.50 1.065±0.17 1.299±0.52 1.325±0.63 1.286±0.01
ENST00000394455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.740±0.00 N/A N/A
ENST00000553399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554523 N/A N/A 0.285±0.00 N/A N/A N/A N/A N/A 0.571±0.00 1.341±0.00 N/A N/A N/A N/A
ENST00000554557 N/A 0.941±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555452 N/A 0.809±0.00 N/A 0.464±0.00 0.790±0.14 N/A 0.405±0.00 N/A N/A 0.969±0.00 0.741±0.00 1.215±0.00 N/A N/A
ENST00000557204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.299±0.00 N/A N/A N/A
ENSG00000139988 ENST00000267502 N/A N/A 1.888±0.00 N/A N/A N/A N/A N/A 3.732±0.00 N/A N/A N/A N/A N/A
ENST00000547463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551171 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021123 ENSMUST00000021548 0.327±0.06 0.065±0.01 2.613±0.52 0.423±0.15 1.029±0.63 0.330±0.17 0.215±0.00 0.217±0.15 0.655±0.64 2.284±1.84 0.124±0.08 0.393±0.21 5.855±2.13 0.135±0.10
ENSMUST00000122227 0.220±0.08 0.073±0.04 N/A N/A N/A 0.297±0.13 0.257±0.09 0.335±0.08 0.066±0.01 N/A 0.105±0.03 0.285±0.19 N/A 0.089±0.00
ENSMUST00000140823 N/A N/A N/A N/A N/A 0.515±0.00 N/A N/A N/A N/A 0.172±0.00 0.271±0.00 N/A 0.159±0.00
ENSMUST00000151980 0.155±0.07 N/A 0.636±0.03 0.093±0.00 0.636±0.22 0.089±0.01 0.081±0.01 0.104±0.07 0.129±0.15 0.592±0.52 0.061±0.02 0.194±0.10 N/A 0.063±0.04
ENSMUSG00000066441 ENSMUST00000085254 1.593±0.27 1.056±0.19 2.137±0.15 2.571±0.52 1.735±0.54 1.738±0.72 0.410±0.04 2.008±0.69 7.485±2.34 2.086±0.91 0.735±0.15 4.155±2.85 6.191±1.96 36.276±5.42
ENSMUST00000159500 2.921±0.47 3.701±1.54 N/A N/A 2.823±1.62 2.800±0.91 0.527±0.09 3.763±0.80 11.496±2.67 2.347±0.39 0.738±0.00 7.147±0.99 N/A N/A
ENSMUST00000161204 3.771±0.63 3.049±0.70 4.896±0.81 4.868±1.04 2.838±0.95 2.164±0.31 0.654±0.07 3.604±0.41 15.652±5.72 3.064±0.35 0.498±0.16 4.375±1.00 7.315±7.97 30.182±7.38

Loading