C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002CM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000072042-ENSG00000139988 CGP 9606 14:67676801-67734452
GeneTranscriptPositionBiotype
ENSG00000072042 (RDH11)
retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 		ENST00000381346 (RDH11-001) 67676801-67695814 protein_coding
ENST00000428130 (RDH11-004) 67678034-67695733 protein_coding
ENST00000553384 (RDH11-003) 67677364-67695754 protein_coding
ENST00000553578 (RDH11-006) 67677393-67692851 retained_intron
ENST00000553816 (RDH11-012) 67684510-67695717 retained_intron
ENST00000554035 (RDH11-013) 67678087-67692483 protein_coding
ENST00000554731 (RDH11-009) 67678073-67695766 nonsense_mediated_decay
ENST00000556692 (RDH11-007) 67692416-67695793 retained_intron
ENST00000557273 (RDH11-011) 67685073-67695730 protein_coding
ENST00000557331 (RDH11-008) 67690275-67695774 nonsense_mediated_decay
ENST00000557726 (RDH11-010) 67685153-67695764 protein_coding
ENSG00000072121 (ZFYVE26)
zinc finger, FYVE domain containing 26 		ENST00000347230 (ZFYVE26-001) 67746520-67816589 protein_coding
ENST00000394455 (ZFYVE26-009) 67727374-67770477 retained_intron
ENST00000553399 (ZFYVE26-010) 67815529-67816590 retained_intron
ENST00000554523 (ZFYVE26-004) 67748229-67816587 retained_intron
ENST00000554557 (ZFYVE26-007) 67748033-67816580 nonsense_mediated_decay
ENST00000554783 (ZFYVE26-012) 67753711-67756421 retained_intron
ENST00000555452 (ZFYVE26-002) 67760782-67816587 protein_coding
ENST00000557204 (ZFYVE26-011) 67777584-67778327 retained_intron
ENST00000557306 (ZFYVE26-008) 67750473-67761491 protein_coding
ENST00000557366 (ZFYVE26-006) 67796221-67816585 retained_intron
ENST00000557407 (ZFYVE26-005) 67797320-67816585 retained_intron
ENSG00000139988 (RDH12)
retinol dehydrogenase 12 (all-trans/9-cis/11-cis) 		ENST00000267502 (RDH12-201) 67720842-67734450 protein_coding
ENST00000547463 (RDH12-003) 67717806-67720899 processed_transcript
ENST00000551171 (RDH12-001) 67701886-67734452 protein_coding
ENST00000552873 (RDH12-002) 67727164-67729746 retained_intron
CIL_0002CM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000066441-ENSMUSG00000021123 CGP 10090 12:79174337-79222665
GeneTranscriptPositionBiotype
ENSMUSG00000021123 (Rdh12)
retinol dehydrogenase 12 		ENSMUST00000021548 (Rdh12-001) 79208914-79222665 protein_coding
ENSMUST00000122227 (Rdh12-003) 79208931-79222664 protein_coding
ENSMUST00000140823 (Rdh12-004) 79210661-79212755 protein_coding
ENSMUST00000151980 (Rdh12-002) 79208947-79222664 retained_intron
ENSMUSG00000066441 (Rdh11)
retinol dehydrogenase 11 		ENSMUST00000085254 (Rdh11-002) 79175551-79190961 protein_coding
ENSMUST00000159500 (Rdh11-003) 79176165-79191793 nonsense_mediated_decay
ENSMUST00000161204 (Rdh11-001) 79174337-79192293 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002CM_0001ENSG00000072042ENST00000381346ENST00000428130ENST00000553384ENST00000553578ENST00000553816ENST00000554035ENST00000554731ENST00000556692ENST00000557273ENST00000557331ENST00000557726ENSG00000072121ENST00000347230ENST00000394455ENST00000553399ENST00000554523ENST00000554557ENST00000554783ENST00000555452ENST00000557204ENST00000557306ENST00000557366ENST00000557407ENSG00000139988ENST00000267502ENST00000547463ENST00000551171ENST00000552873CIL_0002CM_0002ENSMUSG00000021123ENSMUST00000021548ENSMUST00000122227ENSMUST00000140823ENSMUST00000151980ENSMUSG00000066441ENSMUST00000085254ENSMUST00000159500ENSMUST00000161204
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002CM_0001ENSG00000072042ENST00000381346ENST00000553384ENST00000553578ENSG00000072121ENST00000347230ENST00000394455ENST00000554523ENST00000554557ENST00000555452ENST00000557407ENSG00000139988ENST00000267502CIL_0002CM_0002ENSMUSG00000021123ENSMUST00000021548ENSMUST00000122227ENSMUST00000140823ENSMUST00000151980ENSMUSG00000066441ENSMUST00000085254ENSMUST00000159500ENSMUST00000161204
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000072042 ENST00000381346 11.275±0.00 16.437±0.00 6.815±0.00 21.119±11.10 7.224±3.15 15.899±0.00 5.116±0.00 34.705±21.57 20.879±15.24 9.771±4.94 N/A 12.750±6.54 8.442±1.03 23.941±0.00
ENST00000428130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553384 N/A N/A N/A 9.969±0.00 5.143±0.00 N/A N/A 11.652±0.00 14.837±7.00 14.345±0.00 N/A 8.040±3.62 12.576±0.00 17.764±0.00
ENST00000553578 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.387±0.00 N/A N/A N/A N/A
ENST00000553816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556692 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000072121 ENST00000347230 1.447±0.00 1.037±0.00 0.941±0.00 1.034±0.19 1.367±0.42 1.055±0.62 1.390±1.12 0.559±0.00 0.927±0.28 1.420±0.50 1.065±0.17 1.299±0.52 1.325±0.63 1.286±0.01
ENST00000394455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.740±0.00 N/A N/A
ENST00000553399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554523 N/A N/A 0.285±0.00 N/A N/A N/A N/A N/A 0.571±0.00 1.341±0.00 N/A N/A N/A N/A
ENST00000554557 N/A 0.941±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555452 N/A 0.809±0.00 N/A 0.464±0.00 0.790±0.14 N/A 0.405±0.00 N/A N/A 0.969±0.00 0.741±0.00 1.215±0.00 N/A N/A
ENST00000557204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.299±0.00 N/A N/A N/A
ENSG00000139988 ENST00000267502 N/A N/A 1.888±0.00 N/A N/A N/A N/A N/A 3.732±0.00 N/A N/A N/A N/A N/A
ENST00000547463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551171 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021123 ENSMUST00000021548 0.327±0.06 0.065±0.01 2.613±0.52 0.423±0.15 1.029±0.63 0.330±0.17 0.215±0.00 0.217±0.15 0.655±0.64 2.284±1.84 0.124±0.08 0.393±0.21 5.855±2.13 0.135±0.10
ENSMUST00000122227 0.220±0.08 0.073±0.04 N/A N/A N/A 0.297±0.13 0.257±0.09 0.335±0.08 0.066±0.01 N/A 0.105±0.03 0.285±0.19 N/A 0.089±0.00
ENSMUST00000140823 N/A N/A N/A N/A N/A 0.515±0.00 N/A N/A N/A N/A 0.172±0.00 0.271±0.00 N/A 0.159±0.00
ENSMUST00000151980 0.155±0.07 N/A 0.636±0.03 0.093±0.00 0.636±0.22 0.089±0.01 0.081±0.01 0.104±0.07 0.129±0.15 0.592±0.52 0.061±0.02 0.194±0.10 N/A 0.063±0.04
ENSMUSG00000066441 ENSMUST00000085254 1.593±0.27 1.056±0.19 2.137±0.15 2.571±0.52 1.735±0.54 1.738±0.72 0.410±0.04 2.008±0.69 7.485±2.34 2.086±0.91 0.735±0.15 4.155±2.85 6.191±1.96 36.276±5.42
ENSMUST00000159500 2.921±0.47 3.701±1.54 N/A N/A 2.823±1.62 2.800±0.91 0.527±0.09 3.763±0.80 11.496±2.67 2.347±0.39 0.738±0.00 7.147±0.99 N/A N/A
ENSMUST00000161204 3.771±0.63 3.049±0.70 4.896±0.81 4.868±1.04 2.838±0.95 2.164±0.31 0.654±0.07 3.604±0.41 15.652±5.72 3.064±0.35 0.498±0.16 4.375±1.00 7.315±7.97 30.182±7.38

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