C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002DT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000093515-ENSDARG00000094510 CGP 7955 13:14881835-15096108
GeneTranscriptPositionBiotype
ENSDARG00000093515 (sfxn5a)
sideroflexin 5a 		ENSDART00000144464 (sfxn5a-001) 14881835-14943029 protein_coding
ENSDARG00000094510 (rab11fip5a)
RAB11 family interacting protein 5a (class I) 		ENSDART00000146036 (rab11fip5a-001) 14952269-15096108 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0002DT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144040-ENSG00000135631 CGP 9606 2:72942036-73156721
GeneTranscriptPositionBiotype
ENSG00000135631 (RAB11FIP5)
RAB11 family interacting protein 5 (class I) 		ENST00000258098 (RAB11FIP5-001) 73073382-73113018 protein_coding
ENST00000475951 (RAB11FIP5-007) 73088942-73156721 processed_transcript
ENST00000479196 (RAB11FIP5-005) 73081204-73088328 processed_transcript
ENST00000482554 (RAB11FIP5-003) 73073384-73084396 processed_transcript
ENST00000486777 (RAB11FIP5-004) 73073382-73080211 processed_transcript
ENST00000493523 (RAB11FIP5-002) 73073384-73089655 processed_transcript
ENSG00000144040 (SFXN5)
sideroflexin 5 		ENST00000272433 (SFXN5-001) 72942036-73071836 protein_coding
ENST00000410065 (SFXN5-002) 72945022-73071724 protein_coding
ENST00000411783 (SFXN5-003) 72944864-73071673 protein_coding
ENST00000416579 (SFXN5-014) 72973181-73071728 processed_transcript
ENST00000442582 (SFXN5-011) 72998951-73071725 protein_coding
ENST00000450185 (SFXN5-006) 72996512-73071709 nonsense_mediated_decay
ENST00000461352 (SFXN5-004) 72942036-73059180 processed_transcript
ENST00000463277 (SFXN5-015) 72968447-73020839 processed_transcript
ENST00000464825 (SFXN5-018) 72988292-73044615 processed_transcript
ENST00000472259 (SFXN5-007) 73049086-73071266 processed_transcript
ENST00000474528 (SFXN5-005) 72942036-73059172 processed_transcript
ENST00000475630 (SFXN5-020) 73022535-73070567 processed_transcript
ENST00000479293 (SFXN5-013) 73019447-73071289 processed_transcript
ENST00000482289 (SFXN5-010) 72944740-72988348 processed_transcript
ENST00000482542 (SFXN5-016) 72961202-72994964 processed_transcript
ENST00000484123 (SFXN5-019) 73053329-73071662 processed_transcript
ENST00000485057 (SFXN5-023) 73020086-73075619 processed_transcript
ENST00000487508 (SFXN5-017) 72998957-73059176 processed_transcript
ENST00000488839 (SFXN5-021) 73058077-73059158 retained_intron
ENST00000490056 (SFXN5-008) 72944740-72981234 processed_transcript
ENST00000495208 (SFXN5-009) 72944603-72981117 processed_transcript
ENST00000497144 (SFXN5-022) 73001527-73071330 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0002DT_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033720-ENSMUSG00000051343 CGP 10090 6:85213051-85374634
GeneTranscriptPositionBiotype
ENSMUSG00000033720 (Sfxn5)
sideroflexin 5 		ENSMUST00000045846 (Sfxn5-001) 85213051-85333422 protein_coding
ENSMUST00000059034 (Sfxn5-003) 85234380-85333419 protein_coding
ENSMUST00000113787 (Sfxn5-005) 85318872-85332750 protein_coding
ENSMUST00000113788 (Sfxn5-002) 85299083-85333422 protein_coding
ENSMUST00000134392 (Sfxn5-008) 85229307-85264933 processed_transcript
ENSMUST00000138489 (Sfxn5-004) 85299085-85320398 processed_transcript
ENSMUST00000148179 (Sfxn5-007) 85268714-85333406 processed_transcript
ENSMUST00000149362 (Sfxn5-006) 85294922-85333419 processed_transcript
ENSMUSG00000051343 (Rab11fip5)
RAB11 family interacting protein 5 (class I) 		ENSMUST00000060837 (Rab11fip5-201) 85334963-85374634 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002DT_0001ENSDARG00000093515ENSDART00000144464ENSDARG00000094510ENSDART00000146036CIL_0002DT_0002ENSG00000135631ENST00000258098ENST00000475951ENST00000479196ENST00000482554ENST00000486777ENST00000493523ENSG00000144040ENST00000272433ENST00000410065ENST00000411783ENST00000416579ENST00000442582ENST00000450185ENST00000461352ENST00000463277ENST00000464825ENST00000472259ENST00000474528ENST00000475630ENST00000479293ENST00000482289ENST00000482542ENST00000484123ENST00000485057ENST00000487508ENST00000488839ENST00000490056ENST00000495208ENST00000497144CIL_0002DT_0003ENSMUSG00000033720ENSMUST00000045846ENSMUST00000059034ENSMUST00000113787ENSMUST00000113788ENSMUST00000134392ENSMUST00000138489ENSMUST00000148179ENSMUST00000149362ENSMUSG00000051343ENSMUST00000060837
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002DT_0001ENSDARG00000093515ENSDART00000144464ENSDARG00000094510ENSDART00000146036CIL_0002DT_0002ENSG00000135631ENST00000258098ENST00000482554ENST00000486777ENST00000493523ENSG00000144040ENST00000272433ENST00000474528ENST00000490056ENST00000495208CIL_0002DT_0003ENSMUSG00000033720ENSMUST00000045846ENSMUST00000059034ENSMUST00000113788ENSMUST00000149362ENSMUSG00000051343ENSMUST00000060837
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000093515 ENSDART00000144464 N/A N/A N/A 0.409±0.22 N/A N/A 0.708±0.03 0.452±0.00 0.363±0.00 N/A 0.728±0.00 N/A N/A N/A
ENSDARG00000094510 ENSDART00000146036 N/A N/A N/A 3.022±0.88 N/A N/A 0.213±0.01 0.814±0.00 0.096±0.00 N/A 0.209±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135631 ENST00000258098 9.232±0.00 8.540±0.00 2.586±0.00 10.471±5.66 3.987±2.82 3.247±1.74 3.282±3.15 13.164±0.00 2.019±0.00 11.950±0.00 5.152±4.73 5.973±3.53 2.873±0.56 N/A
ENST00000475951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479196 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482554 N/A N/A N/A N/A N/A N/A 0.256±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000486777 5.347±0.00 7.215±0.00 N/A 10.355±0.00 4.445±0.00 4.434±0.00 4.024±0.00 10.848±0.00 N/A 4.123±2.33 3.230±0.00 7.237±0.85 3.291±0.29 32.931±4.37
ENST00000493523 N/A N/A N/A N/A N/A N/A 0.129±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000144040 ENST00000272433 N/A N/A N/A 5.699±0.00 N/A 0.803±0.00 N/A 8.098±0.09 2.466±1.77 N/A 0.144±0.00 3.544±0.00 1.616±0.00 N/A
ENST00000410065 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000411783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474528 N/A N/A N/A 15.588±7.90 N/A N/A N/A N/A N/A 0.624±0.00 N/A N/A 2.982±0.00 N/A
ENST00000475630 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488839 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490056 N/A N/A 6.878±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.125±0.00 N/A N/A N/A
ENST00000497144 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000033720 ENSMUST00000045846 9.099±3.56 6.761±1.25 1.660±0.04 8.980±5.86 6.527±1.51 6.700±0.61 1.141±0.24 8.466±0.21 5.939±5.18 3.007±0.40 0.761±0.26 4.221±1.21 1.282±1.14 0.186±0.09
ENSMUST00000059034 5.323±1.55 N/A N/A N/A 6.363±1.15 3.025±0.12 0.952±0.13 6.386±1.11 4.548±2.49 1.391±0.00 0.783±0.00 2.589±0.50 N/A 0.299±0.10
ENSMUST00000113787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000113788 N/A 16.898±1.22 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149362 N/A N/A N/A N/A 10.626±0.00 7.388±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000051343 ENSMUST00000060837 12.929±0.67 15.289±1.66 15.858±3.77 5.841±3.07 11.156±4.91 5.611±0.68 11.182±0.25 18.965±2.27 0.366±0.18 6.462±1.75 7.757±0.58 16.689±5.50 12.566±11.93 30.505±11.52

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