C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002ET_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000124678-ENSG00000146197 CGP 9606 6:35118071-35253079
GeneTranscriptPositionBiotype
ENSG00000146197 (SCUBE3)
signal peptide, CUB domain, EGF-like 3 		ENST00000274938 (SCUBE3-001) 35214419-35253079 protein_coding
ENSG00000266330 (AL138721.2)
 ENST00000582442 (AL138721.2-201) 35139088-35139192 miRNA
ENSG00000272374 (RP3-329A5.8)
 ENST00000605896 (RP3-329A5.8-001) 35220370-35224630 lincRNA
CIL_0002ET_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000062859-ENSMUSG00000038677 CGP 10090 17:28066747-28174852
GeneTranscriptPositionBiotype
ENSMUSG00000038677 (Scube3)
signal peptide, CUB domain, EGF-like 3 		ENSMUST00000043503 (Scube3-001) 28142316-28174852 protein_coding
ENSMUST00000132670 (Scube3-004) 28153602-28170145 protein_coding
ENSMUST00000137147 (Scube3-002) 28152445-28171514 processed_transcript
ENSMUST00000142170 (Scube3-005) 28165809-28167648 retained_intron
ENSMUST00000148342 (Scube3-003) 28160761-28173027 processed_transcript
ENSMUSG00000062859 (Tcp11)
t-complex protein 11 		ENSMUST00000042692 (Tcp11-001) 28066747-28080584 protein_coding
ENSMUST00000043925 (Tcp11-201) 28066748-28080639 protein_coding
ENSMUST00000114836 (Tcp11-002) 28066751-28080567 protein_coding
ENSMUST00000123628 (Tcp11-005) 28066797-28068476 processed_transcript
ENSMUST00000129046 (Tcp11-004) 28069635-28080639 protein_coding
ENSMUST00000141806 (Tcp11-003) 28074653-28080601 protein_coding
ENSMUSG00000085521 (4930526A20Rik)
RIKEN cDNA 4930526A20 gene 		ENSMUST00000134228 (4930526A20Rik-001) 28075415-28076355 transcribed_processed_pseudogene
ENSMUST00000142461 (4930526A20Rik-002) 28075050-28076677 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002ET_0001ENSG00000146197ENST00000274938ENSG00000266330ENST00000582442ENSG00000272374ENST00000605896CIL_0002ET_0002ENSMUSG00000038677ENSMUST00000043503ENSMUST00000132670ENSMUST00000137147ENSMUST00000142170ENSMUST00000148342ENSMUSG00000062859ENSMUST00000042692ENSMUST00000043925ENSMUST00000114836ENSMUST00000123628ENSMUST00000129046ENSMUST00000141806ENSMUSG00000085521ENSMUST00000134228ENSMUST00000142461
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002ET_0001ENSG00000146197ENST00000274938ENSG00000266330ENST00000582442ENSG00000272374ENST00000605896CIL_0002ET_0002ENSMUSG00000038677ENSMUST00000043503ENSMUST00000132670ENSMUST00000137147ENSMUST00000142170ENSMUST00000148342ENSMUSG00000062859ENSMUST00000042692ENSMUST00000043925ENSMUST00000114836ENSMUST00000123628ENSMUST00000129046ENSMUST00000141806ENSMUSG00000085521ENSMUST00000134228ENSMUST00000142461
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000146197 ENST00000274938 0.388±0.00 0.426±0.00 0.493±0.00 0.200±0.01 0.307±0.13 0.533±0.36 2.066±0.00 1.245±0.00 0.319±0.30 0.886±0.00 0.212±0.00 0.486±0.13 1.160±0.88 1.627±0.49
ENSG00000266330 ENST00000582442 0.544±0.00 5.511±0.00 N/A 0.322±0.00 N/A 1.678±0.00 0.558±0.00 N/A N/A N/A N/A 10.659±8.85 1.251±0.00 0.980±0.71
ENSG00000272374 ENST00000605896 N/A N/A N/A 0.029±0.00 0.140±0.00 N/A 0.043±0.00 0.185±0.00 0.268±0.23 0.327±0.15 0.009±0.00 0.305±0.15 0.041±0.02 1.262±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038677 ENSMUST00000043503 0.114±0.07 4.933±0.46 0.575±0.00 4.660±3.08 0.753±0.29 0.148±0.00 0.184±0.04 0.678±0.14 0.072±0.07 0.775±0.48 0.054±0.01 1.082±0.59 0.119±0.00 1.277±0.06
ENSMUST00000132670 0.161±0.09 N/A N/A N/A 0.154±0.00 N/A N/A N/A N/A 0.269±0.00 0.052±0.00 0.433±0.00 N/A 1.595±0.27
ENSMUST00000137147 0.151±0.00 N/A 0.332±0.00 N/A 0.432±0.09 0.230±0.05 N/A N/A 0.089±0.07 N/A 0.059±0.02 0.785±0.45 0.196±0.05 N/A
ENSMUST00000142170 N/A N/A N/A N/A 1.887±0.00 0.791±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148342 N/A N/A N/A N/A N/A 0.241±0.00 N/A N/A N/A N/A 0.042±0.01 0.301±0.00 0.116±0.00 N/A
ENSMUSG00000062859 ENSMUST00000042692 0.302±0.24 N/A N/A 0.398±0.02 0.093±0.01 0.237±0.08 0.132±0.00 0.109±0.04 0.026±0.01 1.127±0.32 N/A 1.204±0.34 0.146±0.00 294.351±35.74
ENSMUST00000043925 N/A N/A N/A 0.042±0.00 N/A N/A 0.261±0.00 0.449±0.09 0.061±0.00 N/A N/A 2.867±0.00 0.191±0.07 531.494±73.13
ENSMUST00000114836 0.027±0.01 0.032±0.00 N/A N/A 0.108±0.04 N/A 0.258±0.00 0.216±0.12 0.056±0.05 1.286±0.04 N/A 0.769±0.31 0.118±0.03 210.328±59.87
ENSMUST00000123628 0.860±0.00 0.249±0.10 N/A N/A 0.215±0.01 0.854±0.18 0.440±0.30 0.512±0.14 0.092±0.06 4.114±0.24 N/A 2.077±0.29 0.254±0.10 N/A
ENSMUST00000129046 N/A N/A N/A 0.063±0.00 N/A N/A N/A N/A 0.139±0.00 N/A N/A N/A 0.058±0.00 N/A
ENSMUST00000141806 0.089±0.00 N/A N/A N/A 0.145±0.06 N/A N/A N/A 0.069±0.04 N/A 0.100±0.00 0.974±0.00 0.154±0.00 N/A
ENSMUSG00000085521 ENSMUST00000134228 0.311±0.13 0.367±0.21 0.027±0.01 0.017±0.00 0.278±0.00 0.315±0.13 0.121±0.01 0.128±0.09 0.072±0.05 0.441±0.33 N/A 0.723±0.39 N/A 1.825±0.19
ENSMUST00000142461 0.176±0.10 0.141±0.06 0.471±0.44 0.534±0.39 0.208±0.07 0.379±0.16 0.033±0.01 0.156±0.06 0.091±0.08 0.544±0.14 N/A 0.439±0.27 0.202±0.12 6.111±1.10

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