C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002H0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000122786-ENSG00000146856 CGP 9606 7:134744252-135147963
GeneTranscriptPositionBiotype
ENSG00000122786 (CALD1)
caldesmon 1 		ENST00000361675 (CALD1-005) 134779650-134969346 protein_coding
ENST00000361901 (CALD1-001) 134779678-134970641 protein_coding
ENST00000393118 (CALD1-201) 134891400-134970728 protein_coding
ENST00000417172 (CALD1-002) 134744252-134968402 protein_coding
ENST00000422748 (CALD1-003) 134779420-134968859 protein_coding
ENST00000424922 (CALD1-010) 134891610-134968859 protein_coding
ENST00000430085 (CALD1-004) 134779637-134968653 nonsense_mediated_decay
ENST00000435928 (CALD1-020) 134866841-134928900 protein_coding
ENST00000436461 (CALD1-012) 134745467-134960056 protein_coding
ENST00000443197 (CALD1-009) 134891458-134970641 nonsense_mediated_decay
ENST00000445569 (CALD1-027) 134843884-134933123 protein_coding
ENST00000454108 (CALD1-017) 134779625-134928900 protein_coding
ENST00000462181 (CALD1-016) 134779639-134822061 processed_transcript
ENST00000466704 (CALD1-015) 134950375-134968875 processed_transcript
ENST00000472096 (CALD1-024) 134941182-134948102 retained_intron
ENST00000473714 (CALD1-025) 134960531-134965437 retained_intron
ENST00000475772 (CALD1-019) 134779634-134868241 retained_intron
ENST00000478075 (CALD1-023) 134941141-134944551 processed_transcript
ENST00000480638 (CALD1-028) 134965211-134968723 retained_intron
ENST00000482470 (CALD1-008) 134779650-134962389 retained_intron
ENST00000489019 (CALD1-026) 134843884-134900053 processed_transcript
ENST00000495522 (CALD1-029) 134891610-134968859 protein_coding
ENST00000496024 (CALD1-021) 134920566-134933242 processed_transcript
ENST00000498254 (CALD1-018) 134779715-134867975 retained_intron
ENSG00000146856 (AGBL3)
ATP/GTP binding protein-like 3 		ENST00000275763 (AGBL3-001) 134986513-135115875 nonsense_mediated_decay
ENST00000435976 (AGBL3-006) 134986513-135147963 protein_coding
ENST00000436302 (AGBL3-007) 134986508-135135778 protein_coding
ENST00000455283 (AGBL3-008) 134986530-135017207 protein_coding
ENST00000470839 (AGBL3-004) 134986604-134988364 retained_intron
ENST00000476700 (AGBL3-003) 134986548-135012511 retained_intron
ENST00000494702 (AGBL3-005) 134986555-134995550 processed_transcript
ENSG00000223500 (AC083862.6)
 ENST00000427378 (AC083862.6-001) 135128444-135129685 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0002H0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029761-ENSMUSG00000038836 CGP 10090 6:34598500-34859459
GeneTranscriptPositionBiotype
ENSMUSG00000038836 (Agbl3)
ATP/GTP binding protein-like 3 		ENSMUST00000115009 (Agbl3-009) 34780890-34785683 protein_coding
ENSMUST00000115012 (Agbl3-008) 34780875-34785719 protein_coding
ENSMUST00000115014 (Agbl3-006) 34780889-34785644 protein_coding
ENSMUST00000115016 (Agbl3-001) 34780432-34857932 protein_coding
ENSMUST00000115017 (Agbl3-010) 34780432-34857932 protein_coding
ENSMUST00000135304 (Agbl3-002) 34780442-34803789 nonsense_mediated_decay
ENSMUST00000143474 (Agbl3-003) 34780452-34799042 retained_intron
ENSMUST00000148834 (Agbl3-007) 34780848-34859459 nonsense_mediated_decay
ENSMUST00000155726 (Agbl3-004) 34780875-34805631 retained_intron
ENSMUST00000155890 (Agbl3-005) 34780876-34801610 retained_intron
ENSMUSG00000082118 (Gm13862)
predicted gene 13862 		ENSMUST00000121220 (Gm13862-001) 34810631-34810827 processed_pseudogene
ENSMUSG00000082446 (Gm13863)
predicted gene 13863 		ENSMUST00000118782 (Gm13863-001) 34820204-34820899 processed_pseudogene
ENSMUSG00000082920 (Gm13864)
predicted gene 13864 		ENSMUST00000119745 (Gm13864-001) 34786679-34787463 processed_pseudogene
ENSMUSG00000085382 (Gm13861)
predicted gene 13861 		ENSMUST00000137136 (Gm13861-001) 34651354-34653894 lincRNA
ENSMUSG00000086834 (Gm14547)
predicted gene 14547 		ENSMUST00000138341 (Gm14547-001) 34727221-34735389 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002H0_0001ENSG00000122786ENST00000361675ENST00000361901ENST00000393118ENST00000443197ENST00000454108ENST00000472096ENST00000482470ENSG00000146856ENST00000275763ENST00000435976ENST00000436302ENST00000455283ENST00000470839ENST00000476700ENST00000494702ENSG00000223500ENST00000427378CIL_0002H0_0002ENSMUSG00000038836ENSMUST00000115009ENSMUST00000115012ENSMUST00000115014ENSMUST00000115017ENSMUST00000135304ENSMUST00000143474ENSMUST00000148834ENSMUST00000155726ENSMUST00000155890ENSMUSG00000082118ENSMUST00000121220ENSMUSG00000082446ENSMUST00000118782ENSMUSG00000082920ENSMUST00000119745ENSMUSG00000085382ENSMUST00000137136ENSMUSG00000086834ENSMUST00000138341
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122786 ENST00000361675 N/A N/A N/A N/A N/A N/A N/A 12.116±0.00 N/A N/A N/A 7.363±0.00 N/A N/A
ENST00000361901 44.467±0.00 N/A 3.785±0.00 0.458±0.00 27.399±8.58 11.404±0.00 6.953±5.53 21.032±18.13 42.481±29.72 37.414±29.01 6.821±0.00 56.677±33.59 94.096±34.75 20.435±0.00
ENST00000393118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 33.222±0.00 N/A N/A
ENST00000417172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443197 N/A N/A N/A 0.779±0.00 13.380±0.00 N/A 9.185±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000445569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454108 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.227±0.00 N/A N/A N/A
ENST00000462181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466704 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472096 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.756±0.00 N/A N/A N/A
ENST00000473714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482470 N/A N/A N/A N/A N/A N/A 1.029±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000489019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000146856 ENST00000275763 N/A N/A N/A 0.078±0.00 N/A N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A
ENST00000435976 N/A N/A 0.291±0.00 N/A 0.085±0.00 N/A 0.265±0.00 0.057±0.00 0.222±0.00 N/A N/A N/A N/A 1.482±0.00
ENST00000436302 N/A 0.106±0.00 0.113±0.00 0.129±0.00 0.052±0.00 N/A 0.027±0.00 N/A 0.084±0.00 0.230±0.00 N/A N/A N/A 0.657±0.00
ENST00000455283 N/A N/A 1.246±0.00 1.009±0.00 N/A N/A N/A 1.702±0.00 N/A N/A N/A N/A N/A N/A
ENST00000470839 0.128±0.00 0.688±0.00 N/A N/A N/A N/A 0.236±0.00 N/A N/A N/A N/A N/A 0.053±0.01 N/A
ENST00000476700 0.125±0.00 0.293±0.00 N/A 0.224±0.00 0.108±0.00 0.188±0.00 0.092±0.02 0.104±0.00 0.128±0.07 N/A N/A 0.479±0.24 0.032±0.01 0.439±0.00
ENST00000494702 0.265±0.00 N/A N/A N/A 0.688±0.00 0.225±0.00 0.100±0.00 1.273±0.00 0.335±0.05 0.666±0.00 N/A 0.712±0.00 0.110±0.04 N/A
ENSG00000223500 ENST00000427378 0.038±0.00 0.029±0.00 0.324±0.00 0.152±0.02 0.128±0.10 0.038±0.02 0.014±0.01 0.114±0.00 0.156±0.15 N/A 0.072±0.00 0.034±0.00 0.016±0.00 0.411±0.22
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038836 ENSMUST00000115009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.437±0.00 N/A N/A N/A
ENSMUST00000115012 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.311±0.07 N/A 0.932±0.82 N/A
ENSMUST00000115014 2.919±1.70 N/A 2.871±0.85 2.958±0.61 3.366±0.00 0.699±0.00 0.763±0.29 3.951±0.00 1.567±0.45 N/A 0.663±0.18 2.555±1.69 1.181±0.87 N/A
ENSMUST00000115016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000115017 N/A N/A N/A N/A 0.348±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 5.725±1.79
ENSMUST00000135304 0.348±0.04 N/A 0.463±0.00 1.459±0.00 0.491±0.05 0.201±0.05 0.148±0.03 N/A 0.372±0.13 0.417±0.01 0.152±0.09 0.665±0.05 0.128±0.05 N/A
ENSMUST00000143474 1.738±0.18 4.560±2.16 N/A N/A 2.149±0.89 0.769±0.23 0.494±0.00 1.781±0.43 0.661±0.17 1.024±0.00 N/A 5.591±0.76 0.046±0.00 N/A
ENSMUST00000148834 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.688±0.37
ENSMUST00000155726 N/A N/A N/A N/A 0.293±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155890 N/A N/A 0.472±0.00 0.179±0.00 0.327±0.00 N/A N/A 0.924±0.00 N/A N/A 0.097±0.02 0.396±0.17 0.079±0.06 N/A
ENSMUSG00000082118 ENSMUST00000121220 5.582±0.00 3.518±1.42 N/A 1.006±0.00 N/A N/A N/A 1.336±0.00 N/A 3.468±0.63 N/A N/A N/A 5.299±0.32
ENSMUSG00000082446 ENSMUST00000118782 0.086±0.00 0.356±0.00 N/A 0.111±0.00 0.124±0.01 N/A N/A 0.150±0.06 N/A 0.286±0.05 N/A 0.316±0.26 N/A 1.086±0.91
ENSMUSG00000082920 ENSMUST00000119745 0.047±0.00 0.081±0.00 0.160±0.07 0.232±0.12 0.066±0.00 0.225±0.08 0.078±0.02 0.136±0.06 0.192±0.08 0.137±0.01 0.042±0.00 0.240±0.10 0.112±0.04 0.126±0.05
ENSMUSG00000085382 ENSMUST00000137136 0.903±0.29 0.899±0.34 2.274±0.99 0.204±0.10 0.298±0.10 0.435±0.10 0.289±0.06 0.636±0.22 0.025±0.00 0.226±0.12 1.022±0.49 0.712±0.56 0.085±0.00 0.149±0.04
ENSMUSG00000086834 ENSMUST00000138341 N/A N/A 0.036±0.00 N/A 0.454±0.00 N/A N/A N/A 0.313±0.09 N/A N/A N/A 0.363±0.40 0.254±0.08

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