Institute of Cardiovascular Regeneration Webtool Repository

CIL_0002HW_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000197849-ENSG00000255298	CGP	9606	11:124249676-124265867
Gene	Transcript	Position	Biotype
ENSG00000255298 (OR8G5) olfactory receptor, family 8, subfamily G, member 5	ENST00000524943 (OR8G5-001)	124264827-124265867	protein_coding

CIL_0002HW_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000049708-ENSMUSG00000094970	CGP	10090	9:39128167-39185124
Gene	Transcript	Position	Biotype
ENSMUSG00000049708 (Olfr27) olfactory receptor 27	ENSMUST00000057811 (Olfr27-201)	39128167-39145072	protein_coding
ENSMUSG00000094970 (Olfr943) olfactory receptor 943	ENSMUST00000071617 (Olfr943-201)	39166310-39185124	protein_coding

CIL_0002HW_0003 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000057349-ENSMUSG00000094269	CGP	10090	9:39318647-39394737
Gene	Transcript	Position	Biotype
ENSMUSG00000057349 (Olfr948) olfactory receptor 948	ENSMUST00000076516 (Olfr948-201)	39318647-39319612	protein_coding
ENSMUSG00000094269 (Olfr951) olfactory receptor 951	ENSMUST00000078531 (Olfr951-201)	39393793-39394737	protein_coding

CIL_0002HW_0004 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000058820-ENSMUSG00000095194	CGP	10090	9:39018559-39047549
Gene	Transcript	Position	Biotype
ENSMUSG00000058820 (Olfr146) olfactory receptor 146	ENSMUST00000073671 (Olfr146-201)	39018559-39019619	protein_coding

CIL_0002HW_0005 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000059595-ENSMUSG00000058820	CGP	10090	9:38994507-39019619
Gene	Transcript	Position	Biotype
ENSMUSG00000058820 (Olfr146) olfactory receptor 146	ENSMUST00000073671 (Olfr146-201)	39018559-39019619	protein_coding

CIL_0002HW_0006 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000063380-ENSMUSG00000057349	CGP	10090	9:39257720-39319612
Gene	Transcript	Position	Biotype
ENSMUSG00000057349 (Olfr948) olfactory receptor 948	ENSMUST00000076516 (Olfr948-201)	39318647-39319612	protein_coding

CIL_0002HW_0007 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000094970-ENSMUSG00000096555	CGP	10090	9:39166310-39218294
Gene	Transcript	Position	Biotype
ENSMUSG00000094970 (Olfr943) olfactory receptor 943	ENSMUST00000071617 (Olfr943-201)	39166310-39185124	protein_coding
ENSMUSG00000096555 (Olfr944) olfactory receptor 944	ENSMUST00000079650 (Olfr944-201)	39217359-39218294	protein_coding

CIL_0002HW_0008 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000095194-ENSMUSG00000094182	CGP	10090	9:39046614-39060664
Gene	Transcript	Position	Biotype
ENSMUSG00000094182 (Olfr937) olfactory receptor 937	ENSMUST00000055567 (Olfr937-201)	39059729-39060664	protein_coding

CIL_0002HW_0009 (Click to Hide/Show)

Notice (8): Undefined index: CIL_0002HW_0009 [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0002HW_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_000A' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000197849' => 'olfactory receptor, family 8, subfamily G, member 1 (gene/pseudogene)',
		'ENSG00000255298' => 'olfactory receptor, family 8, subfamily G, member 5',
		'ENSMUSG00000049708' => 'olfactory receptor 27',
		'ENSMUSG00000094970' => 'olfactory receptor 943',
		'ENSMUSG00000057349' => 'olfactory receptor 948',
		'ENSMUSG00000094269' => 'olfactory receptor 951',
		'ENSMUSG00000058820' => 'olfactory receptor 146',
		'ENSMUSG00000095194' => 'olfactory receptor 936',
		'ENSMUSG00000059595' => 'olfactory receptor 935',
		'ENSMUSG00000063380' => 'olfactory receptor 945',
		'ENSMUSG00000096555' => 'olfactory receptor 944',
		'ENSMUSG00000093935' => 'predicted gene, 25529',
		'ENSMUSG00000094182' => 'olfactory receptor 937',
		'ENSMUSG00000096109' => 'olfactory receptor 1537'
	),
	'gene_name_arr' => array(
		'ENSG00000197849' => 'OR8G1',
		'ENSG00000255298' => 'OR8G5',
		'ENSMUSG00000049708' => 'Olfr27',
		'ENSMUSG00000094970' => 'Olfr943',
		'ENSMUSG00000057349' => 'Olfr948',
		'ENSMUSG00000094269' => 'Olfr951',
		'ENSMUSG00000058820' => 'Olfr146',
		'ENSMUSG00000095194' => 'Olfr936',
		'ENSMUSG00000059595' => 'Olfr935',
		'ENSMUSG00000063380' => 'Olfr945',
		'ENSMUSG00000096555' => 'Olfr944',
		'ENSMUSG00000093935' => 'Gm25529',
		'ENSMUSG00000094182' => 'Olfr937',
		'ENSMUSG00000096109' => 'Olfr1537'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 5 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 6 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 7 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 8 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 9 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adrenal',
		(int) 1 => 'Heart',
		(int) 2 => 'Lung',
		(int) 3 => 'Placenta',
		(int) 4 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 21,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000341493' => array(
			'start' => '124249676',
			'end' => '124250611',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'OR8G1-001'
		),
		'ENST00000524943' => array(
			'start' => '124264827',
			'end' => '124265867',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'OR8G5-001'
		),
		'ENSMUST00000057811' => array(
			'start' => '39128167',
			'end' => '39145072',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr27-201'
		),
		'ENSMUST00000071617' => array(
			'start' => '39166310',
			'end' => '39185124',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr943-201'
		),
		'ENSMUST00000076516' => array(
			'start' => '39318647',
			'end' => '39319612',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr948-201'
		),
		'ENSMUST00000078531' => array(
			'start' => '39393793',
			'end' => '39394737',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr951-201'
		),
		'ENSMUST00000073671' => array(
			'start' => '39018559',
			'end' => '39019619',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr146-201'
		),
		'ENSMUST00000178303' => array(
			'start' => '39046614',
			'end' => '39047549',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr936-201'
		),
		'ENSMUST00000080748' => array(
			'start' => '38994507',
			'end' => '38995433',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr935-201'
		),
		'ENSMUST00000076903' => array(
			'start' => '39257720',
			'end' => '39258682',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr945-201'
		),
		'ENSMUST00000079650' => array(
			'start' => '39217359',
			'end' => '39218294',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr944-201'
		),
		'ENSMUST00000104850' => array(
			'start' => '39048558',
			'end' => '39048649',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Gm25529-201'
		),
		'ENSMUST00000055567' => array(
			'start' => '39059729',
			'end' => '39060664',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr937-201'
		),
		'ENSMUST00000073248' => array(
			'start' => '39237487',
			'end' => '39238431',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr1537-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0002HW_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_000A' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0002HW_0001' => array(
		'genes_in_region' => array(
			'ENSG00000255298' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Heart',
			(int) 2 => 'Lung',
			(int) 3 => 'Placenta',
			(int) 4 => 'Testis'
		)
	),
	'CIL_0002HW_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000049708' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000094970' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis',
			(int) 1 => 'Testis'
		)
	),
	'CIL_0002HW_0003' => array(
		'genes_in_region' => array(
			'ENSMUSG00000057349' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000094269' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis',
			(int) 1 => 'Testis'
		)
	),
	'CIL_0002HW_0004' => array(
		'genes_in_region' => array(
			'ENSMUSG00000058820' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis'
		)
	),
	'CIL_0002HW_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000058820' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis'
		)
	),
	'CIL_0002HW_0006' => array(
		'genes_in_region' => array(
			'ENSMUSG00000057349' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis'
		)
	),
	'CIL_0002HW_0007' => array(
		'genes_in_region' => array(
			'ENSMUSG00000094970' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096555' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis',
			(int) 1 => 'Testis'
		)
	),
	'CIL_0002HW_0008' => array(
		'genes_in_region' => array(
			'ENSMUSG00000094182' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis'
		)
	),
	'CIL_0002HW_000A' => array(
		'genes_in_region' => array(
			'ENSMUSG00000096555' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000197849' => 'olfactory receptor, family 8, subfamily G, member 1 (gene/pseudogene)',
	'ENSG00000255298' => 'olfactory receptor, family 8, subfamily G, member 5',
	'ENSMUSG00000049708' => 'olfactory receptor 27',
	'ENSMUSG00000094970' => 'olfactory receptor 943',
	'ENSMUSG00000057349' => 'olfactory receptor 948',
	'ENSMUSG00000094269' => 'olfactory receptor 951',
	'ENSMUSG00000058820' => 'olfactory receptor 146',
	'ENSMUSG00000095194' => 'olfactory receptor 936',
	'ENSMUSG00000059595' => 'olfactory receptor 935',
	'ENSMUSG00000063380' => 'olfactory receptor 945',
	'ENSMUSG00000096555' => 'olfactory receptor 944',
	'ENSMUSG00000093935' => 'predicted gene, 25529',
	'ENSMUSG00000094182' => 'olfactory receptor 937',
	'ENSMUSG00000096109' => 'olfactory receptor 1537'
)
$gene_name_arr = array(
	'ENSG00000197849' => 'OR8G1',
	'ENSG00000255298' => 'OR8G5',
	'ENSMUSG00000049708' => 'Olfr27',
	'ENSMUSG00000094970' => 'Olfr943',
	'ENSMUSG00000057349' => 'Olfr948',
	'ENSMUSG00000094269' => 'Olfr951',
	'ENSMUSG00000058820' => 'Olfr146',
	'ENSMUSG00000095194' => 'Olfr936',
	'ENSMUSG00000059595' => 'Olfr935',
	'ENSMUSG00000063380' => 'Olfr945',
	'ENSMUSG00000096555' => 'Olfr944',
	'ENSMUSG00000093935' => 'Gm25529',
	'ENSMUSG00000094182' => 'Olfr937',
	'ENSMUSG00000096109' => 'Olfr1537'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0002HW_0001',
			'tax_id' => '9606',
			'chromosome' => '11',
			'seq_start' => '124249676',
			'seq_end' => '124265867',
			'region_length' => '16191',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000197849-ENSG00000255298'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0002HW_0002',
			'tax_id' => '10090',
			'chromosome' => '9',
			'seq_start' => '39128167',
			'seq_end' => '39185124',
			'region_length' => '56957',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000049708-ENSMUSG00000094970'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0002HW_0003',
			'tax_id' => '10090',
			'chromosome' => '9',
			'seq_start' => '39318647',
			'seq_end' => '39394737',
			'region_length' => '76090',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000057349-ENSMUSG00000094269'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0002HW_0004',
			'tax_id' => '10090',
			'chromosome' => '9',
			'seq_start' => '39018559',
			'seq_end' => '39047549',
			'region_length' => '28990',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000058820-ENSMUSG00000095194'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0002HW_0005',
			'tax_id' => '10090',
			'chromosome' => '9',
			'seq_start' => '38994507',
			'seq_end' => '39019619',
			'region_length' => '25112',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000059595-ENSMUSG00000058820'
		)
	),
	(int) 5 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0002HW_0006',
			'tax_id' => '10090',
			'chromosome' => '9',
			'seq_start' => '39257720',
			'seq_end' => '39319612',
			'region_length' => '61892',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000063380-ENSMUSG00000057349'
		)
	),
	(int) 6 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0002HW_0007',
			'tax_id' => '10090',
			'chromosome' => '9',
			'seq_start' => '39166310',
			'seq_end' => '39218294',
			'region_length' => '51984',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000094970-ENSMUSG00000096555'
		)
	),
	(int) 7 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0002HW_0008',
			'tax_id' => '10090',
			'chromosome' => '9',
			'seq_start' => '39046614',
			'seq_end' => '39060664',
			'region_length' => '14050',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000095194-ENSMUSG00000094182'
		)
	),
	(int) 8 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0002HW_0009',
			'tax_id' => '10090',
			'chromosome' => '9',
			'seq_start' => '39237487',
			'seq_end' => '39258682',
			'region_length' => '21195',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000096109-ENSMUSG00000063380'
		)
	),
	(int) 9 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0002HW_000A',
			'tax_id' => '10090',
			'chromosome' => '9',
			'seq_start' => '39217359',
			'seq_end' => '39238431',
			'region_length' => '21072',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000096555-ENSMUSG00000096109'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adrenal',
	(int) 1 => 'Heart',
	(int) 2 => 'Lung',
	(int) 3 => 'Placenta',
	(int) 4 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 21
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000341493' => array(
		'start' => '124249676',
		'end' => '124250611',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'OR8G1-001'
	),
	'ENST00000524943' => array(
		'start' => '124264827',
		'end' => '124265867',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'OR8G5-001'
	),
	'ENSMUST00000057811' => array(
		'start' => '39128167',
		'end' => '39145072',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr27-201'
	),
	'ENSMUST00000071617' => array(
		'start' => '39166310',
		'end' => '39185124',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr943-201'
	),
	'ENSMUST00000076516' => array(
		'start' => '39318647',
		'end' => '39319612',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr948-201'
	),
	'ENSMUST00000078531' => array(
		'start' => '39393793',
		'end' => '39394737',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr951-201'
	),
	'ENSMUST00000073671' => array(
		'start' => '39018559',
		'end' => '39019619',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr146-201'
	),
	'ENSMUST00000178303' => array(
		'start' => '39046614',
		'end' => '39047549',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr936-201'
	),
	'ENSMUST00000080748' => array(
		'start' => '38994507',
		'end' => '38995433',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr935-201'
	),
	'ENSMUST00000076903' => array(
		'start' => '39257720',
		'end' => '39258682',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr945-201'
	),
	'ENSMUST00000079650' => array(
		'start' => '39217359',
		'end' => '39218294',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr944-201'
	),
	'ENSMUST00000104850' => array(
		'start' => '39048558',
		'end' => '39048649',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Gm25529-201'
	),
	'ENSMUST00000055567' => array(
		'start' => '39059729',
		'end' => '39060664',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr937-201'
	),
	'ENSMUST00000073248' => array(
		'start' => '39237487',
		'end' => '39238431',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr1537-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0002HW_0001' => array(
		'genes_in_region' => array(
			'ENSG00000255298' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Heart',
			(int) 2 => 'Lung',
			(int) 3 => 'Placenta',
			(int) 4 => 'Testis'
		)
	),
	'CIL_0002HW_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000049708' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000094970' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis',
			(int) 1 => 'Testis'
		)
	),
	'CIL_0002HW_0003' => array(
		'genes_in_region' => array(
			'ENSMUSG00000057349' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000094269' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis',
			(int) 1 => 'Testis'
		)
	),
	'CIL_0002HW_0004' => array(
		'genes_in_region' => array(
			'ENSMUSG00000058820' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis'
		)
	),
	'CIL_0002HW_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000058820' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis'
		)
	),
	'CIL_0002HW_0006' => array(
		'genes_in_region' => array(
			'ENSMUSG00000057349' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis'
		)
	),
	'CIL_0002HW_0007' => array(
		'genes_in_region' => array(
			'ENSMUSG00000094970' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096555' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis',
			(int) 1 => 'Testis'
		)
	),
	'CIL_0002HW_0008' => array(
		'genes_in_region' => array(
			'ENSMUSG00000094182' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis'
		)
	),
	'CIL_0002HW_000A' => array(
		'genes_in_region' => array(
			'ENSMUSG00000096555' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0002HW_0009',
		'tax_id' => '10090',
		'chromosome' => '9',
		'seq_start' => '39237487',
		'seq_end' => '39258682',
		'region_length' => '21195',
		'region_type' => 'CGP',
		'el_id' => 'ENSMUSG00000096109-ENSMUSG00000063380'
	)
)
$gene_el = array(
	'ENSMUST00000055567' => array(
		'Testis' => array(
			'average_FPKM' => '0.015',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSMUSG00000094182'
$is_first = false
$tran_el = array(
	'Testis' => array(
		'average_FPKM' => '0.015',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENSMUST00000055567'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0002HW_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_000A' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000197849' => 'olfactory receptor, family 8, subfamily G, member 1 (gene/pseudogene)',
		'ENSG00000255298' => 'olfactory receptor, family 8, subfamily G, member 5',
		'ENSMUSG00000049708' => 'olfactory receptor 27',
		'ENSMUSG00000094970' => 'olfactory receptor 943',
		'ENSMUSG00000057349' => 'olfactory receptor 948',
		'ENSMUSG00000094269' => 'olfactory receptor 951',
		'ENSMUSG00000058820' => 'olfactory receptor 146',
		'ENSMUSG00000095194' => 'olfactory receptor 936',
		'ENSMUSG00000059595' => 'olfactory receptor 935',
		'ENSMUSG00000063380' => 'olfactory receptor 945',
		'ENSMUSG00000096555' => 'olfactory receptor 944',
		'ENSMUSG00000093935' => 'predicted gene, 25529',
		'ENSMUSG00000094182' => 'olfactory receptor 937',
		'ENSMUSG00000096109' => 'olfactory receptor 1537'
	),
	'gene_name_arr' => array(
		'ENSG00000197849' => 'OR8G1',
		'ENSG00000255298' => 'OR8G5',
		'ENSMUSG00000049708' => 'Olfr27',
		'ENSMUSG00000094970' => 'Olfr943',
		'ENSMUSG00000057349' => 'Olfr948',
		'ENSMUSG00000094269' => 'Olfr951',
		'ENSMUSG00000058820' => 'Olfr146',
		'ENSMUSG00000095194' => 'Olfr936',
		'ENSMUSG00000059595' => 'Olfr935',
		'ENSMUSG00000063380' => 'Olfr945',
		'ENSMUSG00000096555' => 'Olfr944',
		'ENSMUSG00000093935' => 'Gm25529',
		'ENSMUSG00000094182' => 'Olfr937',
		'ENSMUSG00000096109' => 'Olfr1537'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 5 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 6 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 7 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 8 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 9 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adrenal',
		(int) 1 => 'Heart',
		(int) 2 => 'Lung',
		(int) 3 => 'Placenta',
		(int) 4 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 21,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000341493' => array(
			'start' => '124249676',
			'end' => '124250611',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'OR8G1-001'
		),
		'ENST00000524943' => array(
			'start' => '124264827',
			'end' => '124265867',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'OR8G5-001'
		),
		'ENSMUST00000057811' => array(
			'start' => '39128167',
			'end' => '39145072',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr27-201'
		),
		'ENSMUST00000071617' => array(
			'start' => '39166310',
			'end' => '39185124',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr943-201'
		),
		'ENSMUST00000076516' => array(
			'start' => '39318647',
			'end' => '39319612',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr948-201'
		),
		'ENSMUST00000078531' => array(
			'start' => '39393793',
			'end' => '39394737',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr951-201'
		),
		'ENSMUST00000073671' => array(
			'start' => '39018559',
			'end' => '39019619',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr146-201'
		),
		'ENSMUST00000178303' => array(
			'start' => '39046614',
			'end' => '39047549',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr936-201'
		),
		'ENSMUST00000080748' => array(
			'start' => '38994507',
			'end' => '38995433',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr935-201'
		),
		'ENSMUST00000076903' => array(
			'start' => '39257720',
			'end' => '39258682',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr945-201'
		),
		'ENSMUST00000079650' => array(
			'start' => '39217359',
			'end' => '39218294',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr944-201'
		),
		'ENSMUST00000104850' => array(
			'start' => '39048558',
			'end' => '39048649',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Gm25529-201'
		),
		'ENSMUST00000055567' => array(
			'start' => '39059729',
			'end' => '39060664',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr937-201'
		),
		'ENSMUST00000073248' => array(
			'start' => '39237487',
			'end' => '39238431',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Olfr1537-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0002HW_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0002HW_000A' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0002HW_0001' => array(
		'genes_in_region' => array(
			'ENSG00000255298' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Heart',
			(int) 2 => 'Lung',
			(int) 3 => 'Placenta',
			(int) 4 => 'Testis'
		)
	),
	'CIL_0002HW_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000049708' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000094970' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis',
			(int) 1 => 'Testis'
		)
	),
	'CIL_0002HW_0003' => array(
		'genes_in_region' => array(
			'ENSMUSG00000057349' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000094269' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis',
			(int) 1 => 'Testis'
		)
	),
	'CIL_0002HW_0004' => array(
		'genes_in_region' => array(
			'ENSMUSG00000058820' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis'
		)
	),
	'CIL_0002HW_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000058820' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis'
		)
	),
	'CIL_0002HW_0006' => array(
		'genes_in_region' => array(
			'ENSMUSG00000057349' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis'
		)
	),
	'CIL_0002HW_0007' => array(
		'genes_in_region' => array(
			'ENSMUSG00000094970' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096555' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis',
			(int) 1 => 'Testis'
		)
	),
	'CIL_0002HW_0008' => array(
		'genes_in_region' => array(
			'ENSMUSG00000094182' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis'
		)
	),
	'CIL_0002HW_000A' => array(
		'genes_in_region' => array(
			'ENSMUSG00000096555' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000197849' => 'olfactory receptor, family 8, subfamily G, member 1 (gene/pseudogene)',
	'ENSG00000255298' => 'olfactory receptor, family 8, subfamily G, member 5',
	'ENSMUSG00000049708' => 'olfactory receptor 27',
	'ENSMUSG00000094970' => 'olfactory receptor 943',
	'ENSMUSG00000057349' => 'olfactory receptor 948',
	'ENSMUSG00000094269' => 'olfactory receptor 951',
	'ENSMUSG00000058820' => 'olfactory receptor 146',
	'ENSMUSG00000095194' => 'olfactory receptor 936',
	'ENSMUSG00000059595' => 'olfactory receptor 935',
	'ENSMUSG00000063380' => 'olfactory receptor 945',
	'ENSMUSG00000096555' => 'olfactory receptor 944',
	'ENSMUSG00000093935' => 'predicted gene, 25529',
	'ENSMUSG00000094182' => 'olfactory receptor 937',
	'ENSMUSG00000096109' => 'olfactory receptor 1537'
)
$gene_name_arr = array(
	'ENSG00000197849' => 'OR8G1',
	'ENSG00000255298' => 'OR8G5',
	'ENSMUSG00000049708' => 'Olfr27',
	'ENSMUSG00000094970' => 'Olfr943',
	'ENSMUSG00000057349' => 'Olfr948',
	'ENSMUSG00000094269' => 'Olfr951',
	'ENSMUSG00000058820' => 'Olfr146',
	'ENSMUSG00000095194' => 'Olfr936',
	'ENSMUSG00000059595' => 'Olfr935',
	'ENSMUSG00000063380' => 'Olfr945',
	'ENSMUSG00000096555' => 'Olfr944',
	'ENSMUSG00000093935' => 'Gm25529',
	'ENSMUSG00000094182' => 'Olfr937',
	'ENSMUSG00000096109' => 'Olfr1537'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0002HW_0001',
			'tax_id' => '9606',
			'chromosome' => '11',
			'seq_start' => '124249676',
			'seq_end' => '124265867',
			'region_length' => '16191',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000197849-ENSG00000255298'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0002HW_0002',
			'tax_id' => '10090',
			'chromosome' => '9',
			'seq_start' => '39128167',
			'seq_end' => '39185124',
			'region_length' => '56957',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000049708-ENSMUSG00000094970'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0002HW_0003',
			'tax_id' => '10090',
			'chromosome' => '9',
			'seq_start' => '39318647',
			'seq_end' => '39394737',
			'region_length' => '76090',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000057349-ENSMUSG00000094269'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0002HW_0004',
			'tax_id' => '10090',
			'chromosome' => '9',
			'seq_start' => '39018559',
			'seq_end' => '39047549',
			'region_length' => '28990',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000058820-ENSMUSG00000095194'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0002HW_0005',
			'tax_id' => '10090',
			'chromosome' => '9',
			'seq_start' => '38994507',
			'seq_end' => '39019619',
			'region_length' => '25112',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000059595-ENSMUSG00000058820'
		)
	),
	(int) 5 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0002HW_0006',
			'tax_id' => '10090',
			'chromosome' => '9',
			'seq_start' => '39257720',
			'seq_end' => '39319612',
			'region_length' => '61892',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000063380-ENSMUSG00000057349'
		)
	),
	(int) 6 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0002HW_0007',
			'tax_id' => '10090',
			'chromosome' => '9',
			'seq_start' => '39166310',
			'seq_end' => '39218294',
			'region_length' => '51984',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000094970-ENSMUSG00000096555'
		)
	),
	(int) 7 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0002HW_0008',
			'tax_id' => '10090',
			'chromosome' => '9',
			'seq_start' => '39046614',
			'seq_end' => '39060664',
			'region_length' => '14050',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000095194-ENSMUSG00000094182'
		)
	),
	(int) 8 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0002HW_0009',
			'tax_id' => '10090',
			'chromosome' => '9',
			'seq_start' => '39237487',
			'seq_end' => '39258682',
			'region_length' => '21195',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000096109-ENSMUSG00000063380'
		)
	),
	(int) 9 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0002HW_000A',
			'tax_id' => '10090',
			'chromosome' => '9',
			'seq_start' => '39217359',
			'seq_end' => '39238431',
			'region_length' => '21072',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000096555-ENSMUSG00000096109'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adrenal',
	(int) 1 => 'Heart',
	(int) 2 => 'Lung',
	(int) 3 => 'Placenta',
	(int) 4 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 21
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000341493' => array(
		'start' => '124249676',
		'end' => '124250611',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'OR8G1-001'
	),
	'ENST00000524943' => array(
		'start' => '124264827',
		'end' => '124265867',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'OR8G5-001'
	),
	'ENSMUST00000057811' => array(
		'start' => '39128167',
		'end' => '39145072',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr27-201'
	),
	'ENSMUST00000071617' => array(
		'start' => '39166310',
		'end' => '39185124',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr943-201'
	),
	'ENSMUST00000076516' => array(
		'start' => '39318647',
		'end' => '39319612',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr948-201'
	),
	'ENSMUST00000078531' => array(
		'start' => '39393793',
		'end' => '39394737',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr951-201'
	),
	'ENSMUST00000073671' => array(
		'start' => '39018559',
		'end' => '39019619',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr146-201'
	),
	'ENSMUST00000178303' => array(
		'start' => '39046614',
		'end' => '39047549',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr936-201'
	),
	'ENSMUST00000080748' => array(
		'start' => '38994507',
		'end' => '38995433',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr935-201'
	),
	'ENSMUST00000076903' => array(
		'start' => '39257720',
		'end' => '39258682',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr945-201'
	),
	'ENSMUST00000079650' => array(
		'start' => '39217359',
		'end' => '39218294',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr944-201'
	),
	'ENSMUST00000104850' => array(
		'start' => '39048558',
		'end' => '39048649',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Gm25529-201'
	),
	'ENSMUST00000055567' => array(
		'start' => '39059729',
		'end' => '39060664',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr937-201'
	),
	'ENSMUST00000073248' => array(
		'start' => '39237487',
		'end' => '39238431',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Olfr1537-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0002HW_0001' => array(
		'genes_in_region' => array(
			'ENSG00000255298' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Heart',
			(int) 2 => 'Lung',
			(int) 3 => 'Placenta',
			(int) 4 => 'Testis'
		)
	),
	'CIL_0002HW_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000049708' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000094970' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis',
			(int) 1 => 'Testis'
		)
	),
	'CIL_0002HW_0003' => array(
		'genes_in_region' => array(
			'ENSMUSG00000057349' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000094269' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis',
			(int) 1 => 'Testis'
		)
	),
	'CIL_0002HW_0004' => array(
		'genes_in_region' => array(
			'ENSMUSG00000058820' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis'
		)
	),
	'CIL_0002HW_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000058820' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis'
		)
	),
	'CIL_0002HW_0006' => array(
		'genes_in_region' => array(
			'ENSMUSG00000057349' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis'
		)
	),
	'CIL_0002HW_0007' => array(
		'genes_in_region' => array(
			'ENSMUSG00000094970' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096555' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis',
			(int) 1 => 'Testis'
		)
	),
	'CIL_0002HW_0008' => array(
		'genes_in_region' => array(
			'ENSMUSG00000094182' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis'
		)
	),
	'CIL_0002HW_000A' => array(
		'genes_in_region' => array(
			'ENSMUSG00000096555' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0002HW_0009',
		'tax_id' => '10090',
		'chromosome' => '9',
		'seq_start' => '39237487',
		'seq_end' => '39258682',
		'region_length' => '21195',
		'region_type' => 'CGP',
		'el_id' => 'ENSMUSG00000096109-ENSMUSG00000063380'
	)
)
$gene_el = array(
	'ENSMUST00000055567' => array(
		'Testis' => array(
			'average_FPKM' => '0.015',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSMUSG00000094182'
$is_first = false
$tran_el = array(
	'Testis' => array(
		'average_FPKM' => '0.015',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENSMUST00000055567'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
ENSMUSG00000096109-ENSMUSG00000063380		CGP	10090	9:39237487-39258682
Gene		Transcript	Position	Biotype

CIL_0002HW_000A (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000096555-ENSMUSG00000096109	CGP	10090	9:39217359-39238431
Gene	Transcript	Position	Biotype
ENSMUSG00000096555 (Olfr944) olfactory receptor 944	ENSMUST00000079650 (Olfr944-201)	39217359-39218294	protein_coding

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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