C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002JR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000059888-ENSDARG00000092644 CGP 7955 16:54559833-54708191
GeneTranscriptPositionBiotype
ENSDARG00000059888 ()
argonaute RISC catalytic component 3 		ENSDART00000083777 () 54559833-54596672 protein_coding
ENSDARG00000092644 (AGO1)
argonaute RISC catalytic component 1 		ENSDART00000138318 (AGO1-201) 54642350-54689222 protein_coding
ENSDART00000156255 (AGO1-001) 54642280-54708191 protein_coding

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0002JR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028842-ENSMUSG00000041530 CGP 10090 4:126331704-126468583
GeneTranscriptPositionBiotype
ENSMUSG00000028842 (Ago3)
argonaute RISC catalytic subunit 3 		ENSMUST00000069097 (Ago3-001) 126332732-126429556 protein_coding
ENSMUST00000123233 (Ago3-006) 126407696-126429541 processed_transcript
ENSMUST00000127831 (Ago3-003) 126345577-126350902 protein_coding
ENSMUST00000132123 (Ago3-002) 126331704-126350320 protein_coding
ENSMUST00000151179 (Ago3-004) 126375678-126404294 processed_transcript
ENSMUST00000155645 (Ago3-005) 126397956-126404335 processed_transcript
ENSMUSG00000041530 (Ago1)
argonaute RISC catalytic subunit 1 		ENSMUST00000097888 (Ago1-001) 126435012-126468583 protein_coding
ENSMUST00000127800 (Ago1-002) 126438321-126461782 nonsense_mediated_decay
ENSMUST00000149425 (Ago1-003) 126459315-126460125 retained_intron
ENSMUST00000156533 (Ago1-004) 126442600-126443361 retained_intron
ENSMUST00000176315 (Ago1-005) 126439503-126459207 protein_coding

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002JR_0001ENSDARG00000059888ENSDART00000083777ENSDARG00000092644ENSDART00000138318ENSDART00000156255CIL_0002JR_0002ENSMUSG00000028842ENSMUST00000069097ENSMUST00000123233ENSMUST00000127831ENSMUST00000132123ENSMUST00000151179ENSMUST00000155645ENSMUSG00000041530ENSMUST00000097888ENSMUST00000127800ENSMUST00000149425ENSMUST00000156533ENSMUST00000176315
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002JR_0001ENSDARG00000059888ENSDART00000083777ENSDARG00000092644ENSDART00000138318ENSDART00000156255CIL_0002JR_0002ENSMUSG00000028842ENSMUST00000069097ENSMUST00000123233ENSMUSG00000041530ENSMUST00000097888ENSMUST00000176315
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000059888 ENSDART00000083777 N/A N/A N/A 1.376±0.00 N/A N/A 0.956±0.71 N/A 0.334±0.00 N/A 0.336±0.00 N/A N/A N/A
ENSDARG00000092644 ENSDART00000138318 N/A N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A 0.059±0.00 N/A N/A N/A
ENSDART00000156255 N/A N/A N/A 0.177±0.00 N/A N/A 0.293±0.00 N/A 0.055±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028842 ENSMUST00000069097 1.524±0.58 1.438±0.19 2.357±0.11 1.945±1.11 1.528±0.19 1.085±0.12 0.960±0.07 1.223±0.20 0.766±0.22 2.004±0.12 0.368±0.17 1.813±0.57 1.093±0.12 0.883±0.07
ENSMUST00000123233 8.299±0.59 10.437±2.84 N/A N/A 9.885±2.57 5.457±2.09 N/A 4.941±0.26 1.584±0.10 7.684±1.72 N/A 12.982±5.15 N/A 6.207±0.74
ENSMUST00000127831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000041530 ENSMUST00000097888 3.582±1.81 3.665±2.15 4.864±1.04 16.301±10.07 2.561±0.68 2.995±1.54 1.707±0.36 2.184±0.73 1.876±0.83 5.634±2.85 1.649±0.27 5.778±2.95 2.337±1.87 0.715±0.34
ENSMUST00000127800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176315 N/A N/A N/A N/A 4.172±0.00 2.432±0.00 N/A N/A N/A N/A N/A 5.954±1.43 N/A N/A

Loading