C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002K8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000031261-ENSDARG00000028507 CGP 7955 8:13581701-13676538
GeneTranscriptPositionBiotype
ENSDARG00000028507 (itgb4)
integrin, beta 4 		ENSDART00000029308 (itgb4-001) 13623711-13676538 protein_coding
ENSDART00000138433 (itgb4-002) 13623974-13630480 retained_intron
ENSDART00000148364 (itgb4-003) 13660116-13670529 processed_transcript
ENSDARG00000031261 (sap30bp)
SAP30 binding protein 		ENSDART00000039878 (sap30bp-001) 13581701-13615143 protein_coding
ENSDART00000131571 (sap30bp-002) 13610525-13614806 retained_intron
CIL_0002K8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000161526-ENSG00000132470 CGP 9606 17:75667116-75757818
GeneTranscriptPositionBiotype
ENSG00000108469 (RECQL5)
RecQ protein-like 5 		ENST00000317905 (RECQL5-001) 75626854-75667189 protein_coding
ENST00000340830 (RECQL5-004) 75650359-75667189 protein_coding
ENST00000420326 (RECQL5-020) 75648865-75667189 protein_coding
ENST00000423245 (RECQL5-002) 75626854-75667142 protein_coding
ENST00000443199 (RECQL5-007) 75626845-75634223 processed_transcript
ENST00000578201 (RECQL5-005) 75631457-75667088 protein_coding
ENST00000578865 (RECQL5-008) 75626845-75628874 retained_intron
ENST00000579265 (RECQL5-017) 75629561-75630234 retained_intron
ENST00000579274 (RECQL5-006) 75652448-75658360 processed_transcript
ENST00000579739 (RECQL5-015) 75638546-75639962 processed_transcript
ENST00000580078 (RECQL5-010) 75651095-75662960 protein_coding
ENST00000580707 (RECQL5-014) 75629318-75639940 protein_coding
ENST00000581825 (RECQL5-019) 75626910-75629095 protein_coding
ENST00000581827 (RECQL5-013) 75638762-75639973 retained_intron
ENST00000582464 (RECQL5-011) 75631492-75660988 nonsense_mediated_decay
ENST00000582548 (RECQL5-018) 75628397-75629442 protein_coding
ENST00000583673 (RECQL5-012) 75631466-75639990 processed_transcript
ENST00000584999 (RECQL5-003) 75650362-75667173 protein_coding
ENST00000585205 (RECQL5-016) 75629775-75630634 retained_intron
ENSG00000108479 (GALK1)
galactokinase 1 		ENST00000225614 (GALK1-002) 75751594-75765236 protein_coding
ENST00000586244 (GALK1-003) 75762758-75765192 nonsense_mediated_decay
ENST00000586733 (GALK1-008) 75757972-75758518 retained_intron
ENST00000587707 (GALK1-006) 75758512-75764005 nonsense_mediated_decay
ENST00000588479 (GALK1-001) 75757944-75765711 protein_coding
ENST00000589030 (GALK1-005) 75763383-75765133 retained_intron
ENST00000589643 (GALK1-009) 75751679-75758519 retained_intron
ENST00000592494 (GALK1-004) 75758591-75765157 retained_intron
ENST00000592997 (GALK1-007) 75757894-75763090 protein_coding
ENSG00000132470 (ITGB4)
integrin, beta 4 		ENST00000200181 (ITGB4-001) 75721436-75757818 protein_coding
ENST00000449880 (ITGB4-003) 75724696-75757818 protein_coding
ENST00000450894 (ITGB4-002) 75721497-75757815 protein_coding
ENST00000578318 (ITGB4-014) 75757039-75757818 protein_coding
ENST00000579211 (ITGB4-013) 75754483-75755778 retained_intron
ENST00000579662 (ITGB4-007) 75721328-75757604 protein_coding
ENST00000580542 (ITGB4-004) 75721509-75741105 retained_intron
ENST00000582629 (ITGB4-008) 75727801-75757818 protein_coding
ENST00000583327 (ITGB4-011) 75751813-75755808 protein_coding
ENST00000584025 (ITGB4-010) 75742424-75749045 retained_intron
ENST00000584374 (ITGB4-009) 75731820-75739905 processed_transcript
ENST00000584558 (ITGB4-005) 75724704-75742657 processed_transcript
ENST00000584939 (ITGB4-012) 75754618-75757002 protein_coding
ENSG00000264270 (RP11-474I11.7)
 ENST00000582093 (RP11-474I11.7-002) 75683543-75684042 antisense
ENST00000585020 (RP11-474I11.7-001) 75683548-75684799 antisense
ENSG00000264829 (RP11-474I11.8)
 ENST00000583910 (RP11-474I11.8-001) 75679474-75679967 antisense
CIL_0002K8_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020755-ENSMUSG00000020758 CGP 10090 11:115933282-116008412
GeneTranscriptPositionBiotype
ENSMUSG00000020752 (Recql5)
RecQ protein-like 5 		ENSMUST00000021097 (Recql5-001) 115892595-115933477 protein_coding
ENSMUST00000131578 (Recql5-007) 115895415-115927386 nonsense_mediated_decay
ENSMUST00000134208 (Recql5-003) 115914534-115933477 nonsense_mediated_decay
ENSMUST00000136774 (Recql5-005) 115892595-115895136 retained_intron
ENSMUST00000140174 (Recql5-002) 115892595-115933477 nonsense_mediated_decay
ENSMUST00000144824 (Recql5-004) 115896265-115933477 retained_intron
ENSMUST00000147172 (Recql5-008) 115896809-115907253 processed_transcript
ENSMUST00000156776 (Recql5-006) 115925443-115927554 retained_intron
ENSMUSG00000020755 (Sap30bp)
SAP30 binding protein 		ENSMUST00000021101 (Sap30bp-002) 115933674-115965535 processed_transcript
ENSMUST00000131737 (Sap30bp-004) 115933637-115938408 processed_transcript
ENSMUST00000140991 (Sap30bp-001) 115933282-115966725 protein_coding
ENSMUST00000146209 (Sap30bp-003) 115933573-115957439 processed_transcript
ENSMUSG00000020758 (Itgb4)
integrin beta 4 		ENSMUST00000021107 (Itgb4-001) 115974709-116008412 protein_coding
ENSMUST00000068981 (Itgb4-002) 115977786-116008412 protein_coding
ENSMUST00000106458 (Itgb4-004) 115977786-116008412 protein_coding
ENSMUST00000106460 (Itgb4-003) 115974979-116008412 protein_coding
ENSMUST00000106461 (Itgb4-201) 115974725-116008411 protein_coding
ENSMUST00000127523 (Itgb4-007) 115990952-115991973 processed_transcript
ENSMUST00000130286 (Itgb4-008) 115992932-115994330 processed_transcript
ENSMUST00000150129 (Itgb4-006) 115989938-115991050 processed_transcript
ENSMUST00000151691 (Itgb4-005) 115974843-115994760 processed_transcript
ENSMUST00000169928 (Itgb4-202) 115974725-116008411 protein_coding
ENSMUSG00000087064 (Sap30bpos)
SAP30 binding protein, opposite strand 		ENSMUST00000132264 (Sap30bpos-001) 115946450-115952105 antisense
ENSMUSG00000097800 (B230344G16Rik)
RIKEN cDNA B230344G16 gene 		ENSMUST00000180782 (B230344G16Rik-201) 115988052-115993715 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002K8_0001ENSDARG00000028507ENSDART00000029308ENSDART00000138433ENSDART00000148364ENSDARG00000031261ENSDART00000039878ENSDART00000131571CIL_0002K8_0002ENSG00000108469ENST00000317905ENST00000340830ENST00000420326ENST00000423245ENST00000443199ENST00000578201ENST00000578865ENST00000579265ENST00000579274ENST00000579739ENST00000580078ENST00000580707ENST00000581825ENST00000581827ENST00000582464ENST00000582548ENST00000583673ENST00000584999ENST00000585205ENSG00000108479ENST00000225614ENST00000586244ENST00000586733ENST00000587707ENST00000588479ENST00000589030ENST00000589643ENST00000592494ENST00000592997ENSG00000132470ENST00000200181ENST00000449880ENST00000450894ENST00000578318ENST00000579211ENST00000579662ENST00000580542ENST00000582629ENST00000583327ENST00000584025ENST00000584374ENST00000584558ENST00000584939ENSG00000264270ENST00000582093ENST00000585020ENSG00000264829ENST00000583910CIL_0002K8_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002K8_0001ENSDARG00000028507ENSDART00000029308ENSDARG00000031261ENSDART00000039878ENSDART00000131571CIL_0002K8_0002ENSG00000108469ENST00000317905ENST00000423245ENSG00000108479ENST00000225614ENST00000587707ENST00000588479ENST00000589030ENST00000592494ENST00000592997ENSG00000132470ENST00000200181ENST00000449880ENST00000450894ENST00000578318ENST00000579662ENST00000580542ENST00000582629ENST00000584558ENSG00000264270ENST00000582093ENST00000585020ENSG00000264829ENST00000583910CIL_0002K8_0003ENSMUSG00000020752ENSMUST00000021097ENSMUST00000136774ENSMUST00000140174ENSMUSG00000020755ENSMUST00000021101ENSMUST00000131737ENSMUST00000140991ENSMUSG00000020758ENSMUST00000021107ENSMUST00000068981ENSMUST00000106458ENSMUST00000106460ENSMUST00000106461ENSMUST00000127523ENSMUST00000169928ENSMUSG00000087064ENSMUST00000132264ENSMUSG00000097800ENSMUST00000180782
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000028507 ENSDART00000029308 N/A N/A N/A 0.831±0.53 N/A N/A 0.241±0.10 1.054±0.00 0.041±0.00 N/A 0.935±0.00 N/A N/A N/A
ENSDART00000138433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000148364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000031261 ENSDART00000039878 N/A N/A N/A 8.538±2.07 N/A N/A 15.211±7.45 11.691±3.14 1.303±0.00 N/A 3.884±0.00 N/A N/A N/A
ENSDART00000131571 N/A N/A N/A 6.635±1.36 N/A N/A N/A N/A N/A N/A 1.993±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108469 ENST00000317905 N/A N/A N/A N/A 8.270±0.00 N/A N/A N/A 4.588±0.00 N/A N/A N/A 7.853±1.74 14.801±5.55
ENST00000340830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000420326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423245 N/A N/A N/A N/A N/A N/A N/A 1.503±0.00 N/A N/A N/A N/A N/A N/A
ENST00000443199 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579739 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000108479 ENST00000225614 8.611±0.00 8.856±0.00 N/A 1.909±1.50 2.884±1.81 1.622±0.89 2.378±2.23 9.402±0.57 27.849±0.00 5.562±0.00 2.247±0.00 7.978±5.76 13.632±5.27 5.649±2.75
ENST00000586244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587707 4.317±0.00 3.507±0.00 1.328±0.00 1.357±0.23 3.709±0.00 1.554±0.58 0.924±0.52 5.689±1.64 15.622±0.00 4.899±0.00 2.273±0.00 2.444±1.07 N/A N/A
ENST00000588479 N/A N/A N/A 0.275±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589030 N/A N/A N/A N/A 0.633±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592494 N/A N/A 3.444±0.00 N/A 2.059±0.00 0.195±0.00 N/A N/A N/A N/A 1.062±0.00 N/A N/A N/A
ENST00000592997 3.323±0.00 7.583±0.00 N/A N/A 2.739±0.00 3.471±0.00 1.725±0.00 6.224±0.00 17.051±0.00 3.613±0.00 0.559±0.00 10.527±2.74 7.471±1.65 3.844±2.70
ENSG00000132470 ENST00000200181 2.160±0.00 3.195±0.00 N/A 2.573±2.13 1.732±0.91 N/A N/A N/A 0.600±0.00 1.314±0.00 0.468±0.00 N/A N/A 1.323±0.00
ENST00000449880 8.662±0.00 N/A 0.318±0.00 7.068±0.00 N/A 13.185±0.00 1.918±0.00 1.224±0.00 0.111±0.00 3.613±1.66 0.718±0.00 5.887±0.15 N/A 0.639±0.00
ENST00000450894 N/A N/A N/A 5.935±0.00 N/A 4.080±0.00 N/A 0.881±0.00 N/A N/A N/A 2.922±1.46 49.208±11.58 N/A
ENST00000578318 N/A N/A N/A N/A N/A N/A N/A 0.363±0.00 N/A N/A N/A N/A N/A N/A
ENST00000579211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579662 2.042±0.00 8.263±0.00 N/A 5.356±0.00 8.127±6.55 16.532±0.00 0.541±0.00 2.856±0.00 0.110±0.00 N/A N/A 10.050±7.85 18.241±9.53 2.193±1.96
ENST00000580542 N/A N/A 1.274±0.00 0.600±0.00 4.363±0.00 7.669±0.00 0.505±0.00 0.210±0.00 3.331±0.00 4.595±0.00 N/A 7.223±0.00 N/A N/A
ENST00000582629 N/A N/A N/A N/A N/A N/A N/A 0.381±0.00 N/A N/A N/A N/A N/A N/A
ENST00000583327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584374 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584558 N/A N/A N/A 0.734±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584939 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000264270 ENST00000582093 N/A 0.056±0.00 N/A N/A N/A N/A N/A N/A 0.319±0.00 N/A N/A 1.786±1.64 N/A N/A
ENST00000585020 N/A N/A N/A 0.348±0.00 0.167±0.00 N/A 0.058±0.00 N/A N/A N/A N/A N/A 0.158±0.00 0.213±0.04
ENSG00000264829 ENST00000583910 N/A 0.305±0.00 1.195±0.00 0.164±0.00 3.349±0.00 N/A 0.093±0.00 N/A 1.071±0.00 0.634±0.00 N/A 0.106±0.00 N/A 0.328±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020752 ENSMUST00000021097 4.630±0.51 4.914±0.54 7.834±0.56 6.224±1.22 4.381±0.76 N/A 1.638±0.15 N/A 3.413±0.91 5.445±0.58 1.964±0.28 7.616±1.41 5.114±1.25 9.499±1.40
ENSMUST00000131578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136774 N/A 7.680±0.83 N/A N/A 5.592±0.85 N/A 2.274±0.00 N/A 2.415±0.17 N/A N/A N/A N/A N/A
ENSMUST00000140174 N/A N/A N/A N/A 1.234±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144824 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000020755 ENSMUST00000021101 5.528±0.86 14.159±1.73 N/A 11.331±3.63 7.358±2.16 N/A 2.189±0.00 N/A 5.585±2.26 6.657±0.27 1.797±0.47 15.948±4.93 8.828±2.37 7.524±1.92
ENSMUST00000131737 N/A N/A N/A 47.094±0.00 N/A N/A N/A N/A N/A N/A N/A 71.405±0.00 47.210±8.08 76.153±0.00
ENSMUST00000140991 4.312±1.04 5.559±2.46 12.166±1.18 12.306±4.50 3.182±0.82 N/A 3.099±0.39 9.867±0.92 4.676±2.57 4.683±1.43 3.339±0.78 10.006±3.69 9.026±3.13 5.942±1.91
ENSMUST00000146209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000020758 ENSMUST00000021107 N/A 0.462±0.04 2.669±1.23 N/A 1.127±0.00 N/A 0.293±0.00 0.489±0.10 0.025±0.00 N/A 0.133±0.00 1.072±0.00 1.132±0.55 N/A
ENSMUST00000068981 1.464±0.98 N/A 9.654±3.60 0.497±0.19 3.239±1.18 29.518±11.41 0.318±0.17 1.277±0.12 0.053±0.03 2.844±0.98 0.502±0.20 3.576±1.14 4.913±2.97 0.073±0.04
ENSMUST00000106458 N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.02 N/A 0.323±0.00 N/A N/A N/A
ENSMUST00000106460 0.988±0.44 1.103±0.00 N/A N/A 2.059±0.53 7.252±1.46 0.415±0.23 0.502±0.00 0.073±0.04 1.221±0.00 0.382±0.23 1.879±0.46 N/A N/A
ENSMUST00000106461 N/A 0.251±0.00 1.393±0.00 N/A N/A N/A N/A N/A N/A 0.495±0.00 N/A 0.800±0.00 N/A N/A
ENSMUST00000127523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.588±0.00
ENSMUST00000130286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169928 0.694±0.00 0.505±0.32 N/A 0.089±0.00 N/A N/A N/A N/A N/A 0.721±0.00 N/A N/A N/A N/A
ENSMUSG00000087064 ENSMUST00000132264 0.273±0.00 0.144±0.06 0.246±0.00 0.249±0.04 0.262±0.03 0.181±0.07 0.071±0.01 0.093±0.04 0.074±0.04 0.343±0.18 0.045±0.03 0.262±0.14 0.072±0.04 0.094±0.04
ENSMUSG00000097800 ENSMUST00000180782 N/A N/A N/A N/A N/A N/A N/A N/A 0.068±0.01 N/A N/A N/A N/A 0.179±0.08

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