C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002NA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000048140-ENSG00000113763 CGP 9606 5:176647387-176880895
GeneTranscriptPositionBiotype
ENSG00000048140 (TSPAN17)
tetraspanin 17 		ENST00000298564 (TSPAN17-009) 176647467-176659054 protein_coding
ENST00000310032 (TSPAN17-001) 176647387-176659020 protein_coding
ENST00000503030 (TSPAN17-005) 176647502-176657618 nonsense_mediated_decay
ENST00000503045 (TSPAN17-008) 176647561-176657732 protein_coding
ENST00000504168 (TSPAN17-007) 176647505-176656956 protein_coding
ENST00000507471 (TSPAN17-006) 176647620-176657056 protein_coding
ENST00000508164 (TSPAN17-003) 176647502-176659051 protein_coding
ENST00000514705 (TSPAN17-004) 176647497-176659053 retained_intron
ENST00000515708 (TSPAN17-002) 176647568-176659053 protein_coding
ENSG00000113763 (UNC5A)
unc-5 homolog A (C. elegans) 		ENST00000329542 (UNC5A-001) 176810477-176880895 protein_coding
ENST00000509580 (UNC5A-003) 176862658-176874048 protein_coding
ENST00000513890 (UNC5A-002) 176862624-176874400 nonsense_mediated_decay
ENSG00000160883 (HK3)
hexokinase 3 (white cell) 		ENST00000292432 (HK3-001) 176880871-176899332 protein_coding
ENST00000504910 (HK3-004) 176889661-176891391 nonsense_mediated_decay
ENST00000506834 (HK3-002) 176880869-176888647 retained_intron
ENST00000509717 (HK3-003) 176887066-176891538 nonsense_mediated_decay
ENST00000514058 (HK3-005) 176881956-176884134 protein_coding
ENST00000514666 (HK3-006) 176881302-176881872 retained_intron
ENSG00000248484 (RP11-375B1.1)
 ENST00000507236 (RP11-375B1.1-001) 176707356-176726243 lincRNA
ENSG00000248859 (RP11-375B1.3)
 ENST00000512115 (RP11-375B1.3-001) 176743205-176743871 lincRNA
CIL_0002NA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025875-ENSMUSG00000025876 CGP 10090 13:54789377-55006018
GeneTranscriptPositionBiotype
ENSMUSG00000025875 (Tspan17)
tetraspanin 17 		ENSMUST00000026993 (Tspan17-001) 54789377-54796776 protein_coding
ENSMUST00000099503 (Tspan17-009) 54789595-54796222 protein_coding
ENSMUST00000130568 (Tspan17-005) 54792740-54796165 protein_coding
ENSMUST00000131692 (Tspan17-002) 54789403-54796768 protein_coding
ENSMUST00000139574 (Tspan17-004) 54795384-54796768 retained_intron
ENSMUST00000145574 (Tspan17-003) 54792871-54796775 protein_coding
ENSMUST00000163796 (Tspan17-007) 54789463-54796187 protein_coding
ENSMUST00000163915 (Tspan17-006) 54789595-54796118 protein_coding
ENSMUST00000171859 (Tspan17-008) 54789645-54795148 protein_coding
ENSMUSG00000025876 (Unc5a)
unc-5 homolog A (C. elegans) 		ENSMUST00000026994 (Unc5a-001) 54949411-55006018 protein_coding
ENSMUST00000109994 (Unc5a-002) 54949411-55006018 protein_coding
ENSMUST00000136852 (Unc5a-004) 54996539-54999785 protein_coding
ENSMUST00000137967 (Unc5a-006) 55003680-55005486 protein_coding
ENSMUST00000142906 (Unc5a-005) 55003010-55004653 retained_intron
ENSMUSG00000025877 (Hk3)
hexokinase 3 		ENSMUST00000052949 (Hk3-001) 55005985-55021385 protein_coding
ENSMUST00000123097 (Hk3-004) 55006068-55020904 protein_coding
ENSMUST00000126234 (Hk3-003) 55006067-55020904 protein_coding
ENSMUST00000132309 (Hk3-005) 55005992-55021296 nonsense_mediated_decay
ENSMUST00000135983 (Hk3-007) 55015767-55021217 nonsense_mediated_decay
ENSMUST00000148221 (Hk3-008) 55015029-55021297 protein_coding
ENSMUST00000149644 (Hk3-006) 55015079-55021322 nonsense_mediated_decay
ENSMUST00000153665 (Hk3-002) 55005988-55021234 protein_coding
ENSMUSG00000085896 (5330429C05Rik)
RIKEN cDNA 5330429C05 gene 		ENSMUST00000154615 (5330429C05Rik-001) 54913235-54914479 lincRNA
ENSMUSG00000087335 (4930526F13Rik)
RIKEN cDNA 4930526F13 gene 		ENSMUST00000144718 (4930526F13Rik-001) 54926763-54930256 lincRNA
ENSMUSG00000100728 (RP24-300H23.6)
predicted gene 29431 		ENSMUST00000189848 (RP24-300H23.6-001) 54887470-54888013 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002NA_0001ENSG00000048140ENST00000298564ENST00000310032ENST00000503030ENST00000503045ENST00000504168ENST00000507471ENST00000508164ENST00000514705ENST00000515708ENSG00000113763ENST00000329542ENST00000509580ENST00000513890ENSG00000160883ENST00000292432ENST00000504910ENST00000506834ENST00000509717ENST00000514058ENST00000514666ENSG00000248484ENST00000507236ENSG00000248859ENST00000512115CIL_0002NA_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002NA_0001ENSG00000048140ENST00000298564ENST00000310032ENST00000504168ENST00000507471ENST00000508164ENST00000514705ENST00000515708ENSG00000113763ENST00000329542ENST00000509580ENST00000513890ENSG00000160883ENST00000292432ENST00000504910ENST00000506834ENST00000514666ENSG00000248484ENST00000507236ENSG00000248859ENST00000512115CIL_0002NA_0002ENSMUSG00000025875ENSMUST00000026993ENSMUST00000099503ENSMUST00000130568ENSMUST00000131692ENSMUST00000139574ENSMUST00000145574ENSMUST00000163796ENSMUST00000171859ENSMUSG00000025876ENSMUST00000026994ENSMUST00000109994ENSMUSG00000025877ENSMUST00000052949ENSMUST00000123097ENSMUST00000126234ENSMUST00000132309ENSMUST00000153665ENSMUSG00000085896ENSMUST00000154615ENSMUSG00000087335ENSMUST00000144718ENSMUSG00000100728ENSMUST00000189848
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000048140 ENST00000298564 1.002±0.00 N/A N/A 1.496±0.00 N/A 2.479±0.00 N/A N/A N/A 2.917±0.00 N/A 3.557±0.00 1.186±0.33 2.578±0.00
ENST00000310032 N/A N/A 0.235±0.00 N/A N/A N/A 0.233±0.00 N/A N/A 3.217±0.00 N/A N/A N/A N/A
ENST00000503030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504168 N/A N/A N/A N/A N/A N/A N/A N/A 1.517±0.00 N/A N/A N/A N/A N/A
ENST00000507471 N/A N/A N/A N/A N/A N/A N/A 2.044±0.00 N/A N/A N/A N/A N/A N/A
ENST00000508164 4.901±0.00 3.245±0.00 0.147±0.00 2.846±2.17 3.370±2.49 2.698±1.32 2.807±0.00 4.486±3.65 1.769±0.00 1.670±1.11 5.317±0.00 3.323±2.22 7.378±3.42 6.196±1.39
ENST00000514705 N/A N/A 0.324±0.00 0.479±0.00 N/A N/A 0.086±0.00 0.268±0.00 N/A N/A 0.282±0.00 0.944±0.08 N/A N/A
ENST00000515708 1.878±0.00 2.943±0.00 N/A 1.580±0.00 N/A N/A 1.659±0.80 N/A 1.181±0.13 1.852±0.80 2.924±0.00 3.580±1.44 1.488±0.01 2.444±0.00
ENSG00000113763 ENST00000329542 N/A N/A N/A 12.346±6.43 N/A 0.095±0.02 N/A N/A N/A N/A N/A 0.360±0.01 N/A 0.708±0.09
ENST00000509580 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.149±0.00 N/A N/A N/A
ENST00000513890 N/A N/A N/A N/A N/A N/A N/A N/A 0.258±0.00 N/A N/A N/A N/A N/A
ENSG00000160883 ENST00000292432 3.622±0.00 1.380±0.00 0.024±0.00 N/A 1.258±0.45 0.230±0.03 0.596±0.00 0.522±0.00 1.154±0.00 1.806±0.61 N/A 0.417±0.14 1.521±0.42 0.489±0.00
ENST00000504910 N/A N/A N/A N/A N/A 0.733±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506834 1.945±0.00 2.537±0.00 N/A N/A 0.601±0.00 0.213±0.00 0.428±0.00 0.656±0.00 0.546±0.49 5.760±0.00 0.040±0.00 0.646±0.19 1.312±0.57 1.919±0.42
ENST00000509717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514666 N/A N/A N/A N/A N/A N/A N/A N/A 0.928±0.00 N/A N/A N/A N/A N/A
ENSG00000248484 ENST00000507236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.031±0.00
ENSG00000248859 ENST00000512115 N/A N/A N/A 1.657±0.72 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.254±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025875 ENSMUST00000026993 16.222±7.90 8.478±1.96 9.742±1.60 2.984±1.04 6.812±2.18 5.469±1.55 1.799±0.42 2.498±0.44 0.392±0.24 12.017±1.55 5.753±0.86 5.075±1.45 1.479±0.90 4.812±2.04
ENSMUST00000099503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.631±1.67 N/A N/A
ENSMUST00000130568 N/A N/A N/A N/A N/A N/A N/A N/A 0.243±0.05 N/A 3.276±0.68 N/A 1.934±0.00 N/A
ENSMUST00000131692 7.034±0.00 4.046±0.00 N/A N/A 3.833±0.00 N/A N/A 0.707±0.00 0.127±0.05 N/A 1.698±0.00 N/A 0.291±0.00 N/A
ENSMUST00000139574 N/A N/A N/A 8.619±0.00 N/A N/A N/A 3.337±0.22 0.611±0.12 N/A N/A N/A 3.207±2.27 3.292±0.00
ENSMUST00000145574 14.277±3.29 N/A N/A 4.677±0.00 4.346±0.00 N/A 1.145±0.00 N/A 0.139±0.03 N/A 2.849±0.52 9.947±0.58 0.669±0.00 N/A
ENSMUST00000163796 N/A 9.280±1.51 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171859 N/A N/A N/A 11.129±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.907±0.00 N/A
ENSMUSG00000025876 ENSMUST00000026994 1.508±0.00 1.339±0.32 2.612±0.24 2.102±0.22 2.283±0.00 0.479±0.04 N/A 0.122±0.00 0.194±0.00 N/A N/A 0.722±0.12 N/A 0.098±0.00
ENSMUST00000109994 7.897±2.31 6.289±0.84 15.756±3.53 8.702±1.66 10.912±3.39 1.909±0.45 0.337±0.11 0.851±0.17 0.359±0.15 0.952±0.20 5.530±0.42 1.500±0.35 3.963±2.33 0.337±0.09
ENSMUST00000136852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142906 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000025877 ENSMUST00000052949 N/A N/A N/A N/A N/A 0.954±0.00 0.223±0.13 0.264±0.00 2.258±1.71 0.983±0.32 N/A 1.170±0.85 0.600±0.00 N/A
ENSMUST00000123097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.113±0.00 0.424±0.00 N/A
ENSMUST00000126234 N/A N/A N/A N/A N/A 0.976±0.08 0.590±0.00 0.266±0.00 N/A N/A N/A 1.562±0.25 N/A N/A
ENSMUST00000132309 2.395±0.00 N/A N/A N/A 3.315±0.00 N/A 0.132±0.00 0.331±0.09 1.126±0.59 1.103±0.12 N/A 1.600±0.64 N/A 0.183±0.00
ENSMUST00000135983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153665 N/A N/A N/A N/A N/A 0.794±0.00 0.371±0.13 N/A 0.875±0.35 0.821±0.13 N/A 0.569±0.05 N/A 0.394±0.06
ENSMUSG00000085896 ENSMUST00000154615 N/A N/A 0.088±0.04 0.200±0.00 0.262±0.00 N/A N/A N/A N/A N/A N/A N/A 0.020±0.01 N/A
ENSMUSG00000087335 ENSMUST00000144718 N/A N/A 0.004±0.00 0.016±0.01 0.097±0.05 N/A 0.019±0.00 0.026±0.01 0.023±0.03 N/A N/A N/A 0.027±0.01 7.150±1.15
ENSMUSG00000100728 ENSMUST00000189848 N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.037±0.00 0.586±0.37

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