C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002Q3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000122779-ENSG00000157703 CGP 9606 7:138460334-138701352
GeneTranscriptPositionBiotype
ENSG00000122779 (TRIM24)
tripartite motif containing 24 		ENST00000343526 (TRIM24-001) 138460334-138589993 protein_coding
ENST00000415680 (TRIM24-007) 138460435-138585585 protein_coding
ENST00000464210 (TRIM24-010) 138514400-138525314 processed_transcript
ENST00000485318 (TRIM24-011) 138514400-138515305 processed_transcript
ENST00000493595 (TRIM24-012) 138554770-138573642 processed_transcript
ENST00000497516 (TRIM24-014) 138461065-138570868 processed_transcript
ENST00000620194 (TRIM24-201) 138460549-138584951 protein_coding
ENSG00000157703 (SVOPL)
SVOP-like 		ENST00000288513 (SVOPL-001) 138594285-138663152 protein_coding
ENST00000419765 (SVOPL-005) 138594600-138679079 protein_coding
ENST00000421622 (SVOPL-004) 138594285-138701352 protein_coding
ENST00000436657 (SVOPL-201) 138594286-138664224 protein_coding
ENST00000441685 (SVOPL-002) 138594285-138663571 nonsense_mediated_decay
ENST00000463557 (SVOPL-006) 138594437-138627444 processed_transcript
ENST00000478865 (SVOPL-007) 138594287-138626094 retained_intron
ENSG00000234995 (AC013429.5)
 ENST00000418798 (AC013429.5-001) 138490581-138491361 processed_pseudogene
ENSG00000243099 (AC020983.5)
 ENST00000417063 (AC020983.5-001) 138688980-138689522 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0002Q3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029833-ENSMUSG00000029830 CGP 10090 6:37870811-38046996
GeneTranscriptPositionBiotype
ENSMUSG00000029830 (Svopl)
SV2 related protein homolog (rat)-like 		ENSMUST00000040486 (Svopl-004) 38015273-38046996 retained_intron
ENSMUST00000096040 (Svopl-001) 37983739-38046996 protein_coding
ENSMUST00000172585 (Svopl-002) 37984512-38031089 nonsense_mediated_decay
ENSMUST00000173428 (Svopl-003) 38014818-38023287 retained_intron
ENSMUSG00000029833 (Trim24)
tripartite motif-containing 24 		ENSMUST00000031859 (Trim24-001) 37870811-37966296 protein_coding
ENSMUST00000120238 (Trim24-003) 37900487-37965932 protein_coding
ENSMUST00000120428 (Trim24-002) 37870811-37966296 protein_coding
ENSMUST00000123007 (Trim24-007) 37915221-37928008 retained_intron
ENSMUST00000135387 (Trim24-008) 37948559-37953630 retained_intron
ENSMUST00000149561 (Trim24-004) 37876330-37931484 processed_transcript
ENSMUST00000149828 (Trim24-006) 37870811-37946799 retained_intron
ENSMUST00000153004 (Trim24-005) 37870811-37921505 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002Q3_0001ENSG00000122779ENST00000343526ENST00000415680ENST00000464210ENST00000485318ENST00000493595ENST00000497516ENST00000620194ENSG00000157703ENST00000288513ENST00000419765ENST00000421622ENST00000436657ENST00000441685ENST00000463557ENST00000478865ENSG00000234995ENST00000418798ENSG00000243099ENST00000417063CIL_0002Q3_0002ENSMUSG00000029830ENSMUST00000040486ENSMUST00000096040ENSMUST00000172585ENSMUST00000173428ENSMUSG00000029833ENSMUST00000031859ENSMUST00000120238ENSMUST00000120428ENSMUST00000123007ENSMUST00000135387ENSMUST00000149561ENSMUST00000149828ENSMUST00000153004
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002Q3_0001ENSG00000122779ENST00000343526ENST00000415680ENST00000464210ENST00000497516ENST00000620194ENSG00000157703ENST00000288513ENST00000419765ENST00000421622ENST00000436657ENST00000441685ENST00000463557ENST00000478865ENSG00000234995ENST00000418798ENSG00000243099ENST00000417063CIL_0002Q3_0002ENSMUSG00000029830ENSMUST00000040486ENSMUST00000096040ENSMUST00000172585ENSMUST00000173428ENSMUSG00000029833ENSMUST00000031859ENSMUST00000120238ENSMUST00000120428ENSMUST00000135387ENSMUST00000149828ENSMUST00000153004
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122779 ENST00000343526 0.850±0.00 N/A N/A 0.430±0.00 0.317±0.00 0.437±0.20 0.335±0.10 N/A 0.571±0.01 0.184±0.00 N/A 2.307±0.93 0.357±0.09 0.975±0.00
ENST00000415680 5.056±0.00 4.254±0.00 0.697±0.00 2.438±1.42 2.371±1.17 1.950±0.72 1.882±1.33 3.592±1.79 2.241±1.81 1.831±0.57 8.381±0.00 8.433±5.17 3.865±1.46 14.383±2.06
ENST00000464210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.767±0.00
ENST00000485318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497516 N/A N/A 1.708±0.00 1.177±0.00 N/A 1.670±0.00 0.845±0.00 2.639±0.00 N/A N/A 0.784±0.00 N/A N/A N/A
ENST00000620194 N/A N/A N/A 1.712±0.00 N/A 1.229±0.00 0.396±0.00 2.559±0.00 1.963±0.00 N/A 1.328±0.00 3.685±0.00 N/A N/A
ENSG00000157703 ENST00000288513 N/A N/A N/A N/A 0.172±0.00 0.290±0.25 N/A N/A N/A N/A N/A 0.369±0.13 0.154±0.09 0.343±0.00
ENST00000419765 N/A 0.064±0.00 N/A 0.238±0.19 0.544±0.00 N/A N/A 0.232±0.00 N/A 0.387±0.00 N/A 0.162±0.00 0.334±0.20 N/A
ENST00000421622 N/A N/A 0.786±0.00 N/A N/A 0.440±0.00 N/A N/A N/A 0.281±0.00 N/A N/A N/A N/A
ENST00000436657 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.115±0.00 0.261±0.00 N/A
ENST00000441685 N/A N/A 0.071±0.00 N/A N/A 0.023±0.02 N/A N/A N/A N/A N/A 0.012±0.00 N/A 0.172±0.14
ENST00000463557 N/A N/A N/A N/A N/A N/A N/A 0.327±0.00 N/A N/A N/A N/A 0.358±0.19 N/A
ENST00000478865 N/A N/A N/A N/A N/A 0.039±0.00 N/A N/A N/A N/A N/A 0.118±0.00 N/A N/A
ENSG00000234995 ENST00000418798 0.027±0.00 0.070±0.00 N/A N/A N/A 0.037±0.00 N/A 0.369±0.34 N/A 0.099±0.00 N/A 0.105±0.06 N/A 0.037±0.00
ENSG00000243099 ENST00000417063 N/A N/A 0.111±0.00 0.026±0.00 0.050±0.00 0.047±0.00 0.045±0.00 N/A N/A N/A 0.045±0.00 N/A 0.114±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029830 ENSMUST00000040486 0.107±0.00 N/A 0.056±0.00 N/A N/A 0.057±0.02 N/A 0.534±0.08 0.008±0.00 0.065±0.03 0.022±0.00 0.156±0.14 0.025±0.02 0.009±0.00
ENSMUST00000096040 0.284±0.00 0.114±0.04 0.348±0.04 0.019±0.00 0.210±0.10 0.138±0.04 0.180±0.00 2.558±0.62 0.019±0.00 0.135±0.02 0.058±0.02 0.369±0.22 0.068±0.06 0.103±0.05
ENSMUST00000172585 0.854±0.40 0.388±0.07 0.186±0.00 N/A 0.812±0.34 1.216±0.71 0.157±0.06 3.692±1.21 0.036±0.03 0.159±0.08 0.073±0.06 0.450±0.25 0.077±0.03 0.071±0.00
ENSMUST00000173428 0.564±0.09 0.429±0.22 0.462±0.12 N/A 0.968±0.45 0.712±0.26 0.341±0.09 N/A 0.016±0.00 0.128±0.00 N/A 0.203±0.00 0.083±0.00 0.081±0.01
ENSMUSG00000029833 ENSMUST00000031859 N/A 1.271±0.04 1.672±0.01 4.193±0.87 2.519±0.42 1.874±0.34 1.640±0.24 2.082±0.98 1.618±0.57 2.099±0.09 5.130±0.96 4.089±0.83 0.854±0.06 12.795±3.69
ENSMUST00000120238 3.262±0.26 N/A N/A 3.804±0.00 2.858±0.17 2.481±0.00 1.423±0.35 2.357±0.63 2.439±0.74 1.247±0.32 N/A 5.000±0.89 1.858±0.00 17.903±3.81
ENSMUST00000120428 3.472±0.87 1.382±0.27 3.279±0.04 8.804±2.12 3.878±0.55 3.462±0.90 1.165±0.00 3.825±1.29 4.178±1.27 2.206±0.18 3.536±0.79 5.510±2.94 3.073±0.96 13.432±3.57
ENSMUST00000123007 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135387 4.834±0.66 N/A N/A 9.681±0.00 4.999±1.44 N/A 2.662±0.35 4.043±0.00 N/A 2.481±0.16 N/A 5.094±0.00 N/A N/A
ENSMUST00000149561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149828 N/A 3.743±1.07 N/A N/A 2.526±0.54 2.297±0.55 N/A N/A 2.788±0.56 1.439±0.09 N/A 5.697±2.58 N/A N/A
ENSMUST00000153004 N/A 1.906±0.20 N/A N/A 2.572±0.07 1.643±0.22 N/A N/A N/A 1.264±0.15 N/A 4.064±1.59 N/A N/A

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