C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002UE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000168758-ENSG00000168754 CGP 9606 2:96859716-97018438
GeneTranscriptPositionBiotype
ENSG00000168754 (FAM178B)
family with sequence similarity 178, member B 		ENST00000393526 (FAM178B-001) 96875882-96898133 protein_coding
ENST00000417561 (FAM178B-201) 96875883-97018438 protein_coding
ENST00000470789 (FAM178B-006) 96876026-96895142 processed_transcript
ENST00000478671 (FAM178B-004) 96921531-96950109 processed_transcript
ENST00000490605 (FAM178B-002) 96875885-96986592 protein_coding
ENST00000494172 (FAM178B-005) 96877757-96895162 retained_intron
ENST00000520074 (FAM178B-007) 96923569-96951935 processed_transcript
ENSG00000168758 (SEMA4C)
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C 		ENST00000305476 (SEMA4C-001) 96859716-96869971 protein_coding
ENST00000442264 (SEMA4C-006) 96865234-96868588 protein_coding
ENST00000449330 (SEMA4C-005) 96865667-96870757 protein_coding
ENST00000467747 (SEMA4C-003) 96859748-96863328 retained_intron
ENST00000474420 (SEMA4C-004) 96859736-96862447 retained_intron
ENST00000482925 (SEMA4C-002) 96859742-96866930 retained_intron
ENSG00000273634 (RP11-219H23.2)
 ENST00000610982 (RP11-219H23.2-001) 97008368-97009104 processed_pseudogene
ENSG00000274206 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000548393 (Metazoa_SRP.1-274) 96938923-96939203 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0002UE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026121-ENSMUSG00000046337 CGP 10090 1:36548642-36683183
GeneTranscriptPositionBiotype
ENSMUSG00000026121 (Sema4c)
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C 		ENSMUST00000114991 (Sema4c-201) 36548642-36558381 protein_coding
ENSMUSG00000089906 (Gm6428)
predicted pseudogene 6428 		ENSMUST00000161062 (Gm6428-001) 36601802-36602146 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002UE_0001ENSG00000168754ENST00000393526ENST00000417561ENST00000470789ENST00000478671ENST00000490605ENST00000494172ENST00000520074ENSG00000168758ENST00000305476ENST00000442264ENST00000449330ENST00000467747ENST00000474420ENST00000482925ENSG00000273634ENST00000610982ENSG00000274206ENST00000548393CIL_0002UE_0002ENSMUSG00000026121ENSMUST00000114991ENSMUSG00000089906ENSMUST00000161062
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002UE_0001ENSG00000168754ENST00000393526ENST00000470789ENST00000478671ENST00000490605ENST00000494172ENST00000520074ENSG00000168758ENST00000305476ENST00000467747ENST00000474420ENST00000482925ENSG00000273634ENST00000610982ENSG00000274206ENST00000548393CIL_0002UE_0002ENSMUSG00000026121ENSMUST00000114991ENSMUSG00000089906ENSMUST00000161062
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000168754 ENST00000393526 N/A N/A N/A N/A N/A N/A N/A N/A 0.048±0.02 N/A N/A N/A 0.798±0.23 N/A
ENST00000417561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470789 0.942±0.00 0.841±0.00 N/A N/A 1.828±0.00 2.140±0.00 0.101±0.00 N/A N/A 2.332±0.00 N/A 0.592±0.21 0.514±0.00 5.311±0.00
ENST00000478671 N/A N/A N/A 1.948±0.00 N/A N/A N/A N/A N/A N/A 0.078±0.00 0.577±0.44 N/A N/A
ENST00000490605 N/A N/A N/A N/A N/A N/A 0.013±0.00 0.011±0.00 N/A N/A N/A 0.098±0.02 N/A 6.751±1.92
ENST00000494172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.132±0.00 N/A N/A N/A
ENST00000520074 N/A 0.427±0.00 N/A N/A N/A N/A 0.198±0.00 0.037±0.00 N/A N/A 0.030±0.00 0.756±0.00 N/A N/A
ENSG00000168758 ENST00000305476 13.869±0.00 11.014±0.00 N/A 7.645±6.74 3.439±1.61 9.649±9.35 1.833±1.08 5.277±0.00 5.228±0.00 19.800±0.00 2.261±0.00 17.889±6.89 38.783±19.67 7.354±0.00
ENST00000442264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449330 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467747 N/A 4.977±0.00 0.807±0.00 4.068±0.00 1.823±0.00 N/A 0.698±0.00 1.211±0.00 N/A 0.218±0.00 N/A N/A N/A 1.312±0.22
ENST00000474420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.716±0.00 N/A N/A
ENST00000482925 N/A 3.771±0.00 N/A N/A 1.054±0.00 N/A 0.290±0.00 N/A 1.102±0.00 4.362±0.00 N/A 3.199±1.27 N/A N/A
ENSG00000273634 ENST00000610982 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.097±0.00 N/A N/A N/A N/A
ENSG00000274206 ENST00000548393 0.530±0.00 2.449±0.00 N/A 0.636±0.00 1.405±0.00 0.338±0.00 0.271±0.00 0.593±0.00 0.063±0.00 1.198±0.00 0.252±0.00 0.361±0.00 0.375±0.00 0.780±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026121 ENSMUST00000114991 11.374±2.80 8.368±1.90 13.865±2.60 9.756±3.99 7.135±1.67 3.492±1.15 2.301±0.74 2.501±0.56 1.199±0.76 8.532±1.52 2.058±0.74 9.213±3.66 20.340±10.31 N/A
ENSMUSG00000089906 ENSMUST00000161062 N/A N/A 0.080±0.03 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 2.427±3.76

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