C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002V8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000075624-ENSG00000075618 CGP 9606 7:5527151-5606655
GeneTranscriptPositionBiotype
ENSG00000075618 (FSCN1)
fascin actin-bundling protein 1 		ENST00000382361 (FSCN1-001) 5592823-5606655 protein_coding
ENST00000405801 (FSCN1-005) 5594686-5603998 protein_coding
ENST00000444748 (FSCN1-003) 5593848-5603983 protein_coding
ENST00000447103 (FSCN1-004) 5594547-5603946 protein_coding
ENST00000473330 (FSCN1-002) 5602872-5606654 retained_intron
ENSG00000075624 (ACTB)
actin, beta 		ENST00000331789 (ACTB-001) 5527151-5530709 protein_coding
ENST00000414620 (ACTB-010) 5529282-5562790 protein_coding
ENST00000417101 (ACTB-012) 5529235-5529982 protein_coding
ENST00000425660 (ACTB-002) 5527156-5530601 nonsense_mediated_decay
ENST00000432588 (ACTB-008) 5528592-5563784 protein_coding
ENST00000443528 (ACTB-009) 5529216-5562828 protein_coding
ENST00000462494 (ACTB-003) 5527156-5530601 retained_intron
ENST00000464611 (ACTB-013) 5527151-5528098 processed_transcript
ENST00000473257 (ACTB-011) 5528150-5530604 processed_transcript
ENST00000477812 (ACTB-007) 5528470-5530590 retained_intron
ENST00000480301 (ACTB-006) 5529067-5530583 retained_intron
ENST00000484841 (ACTB-005) 5528111-5530602 retained_intron
ENST00000493945 (ACTB-004) 5527741-5529663 retained_intron
ENSG00000228974 (AC006483.5)
 ENST00000487308 (AC006483.5-001) 5560743-5561055 processed_pseudogene
ENSG00000272719 (CTB-161C1.1)
 ENST00000609813 (CTB-161C1.1-001) 5556731-5557245 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0002V8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029580-ENSMUSG00000029581 CGP 10090 5:142903115-142973185
GeneTranscriptPositionBiotype
ENSMUSG00000029580 (Actb)
actin, beta 		ENSMUST00000100497 (Actb-001) 142903115-142906754 protein_coding
ENSMUST00000106216 (Actb-006) 142904705-142905937 protein_coding
ENSMUST00000163829 (Actb-004) 142904672-142906722 protein_coding
ENSMUST00000164765 (Actb-005) 142904873-142906694 retained_intron
ENSMUST00000165629 (Actb-008) 142904766-142906672 retained_intron
ENSMUST00000167386 (Actb-003) 142904395-142906725 processed_transcript
ENSMUST00000167721 (Actb-002) 142903501-142906702 protein_coding
ENSMUST00000171419 (Actb-007) 142904351-142905821 protein_coding
ENSMUSG00000029581 (Fscn1)
fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus) 		ENSMUST00000031565 (Fscn1-001) 142960343-142973185 protein_coding
ENSMUST00000129306 (Fscn1-002) 142960843-142972170 protein_coding
ENSMUST00000135293 (Fscn1-006) 142970085-142971989 retained_intron
ENSMUST00000137552 (Fscn1-005) 142963250-142971953 protein_coding
ENSMUST00000139131 (Fscn1-004) 142964533-142970674 protein_coding
ENSMUST00000150622 (Fscn1-003) 142962953-142970552 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002V8_0001ENSG00000075618ENST00000382361ENST00000405801ENST00000444748ENST00000447103ENST00000473330ENSG00000075624ENST00000331789ENST00000414620ENST00000417101ENST00000425660ENST00000432588ENST00000443528ENST00000462494ENST00000464611ENST00000473257ENST00000477812ENST00000480301ENST00000484841ENST00000493945ENSG00000228974ENST00000487308ENSG00000272719ENST00000609813CIL_0002V8_0002ENSMUSG00000029580ENSMUST00000100497ENSMUST00000106216ENSMUST00000163829ENSMUST00000164765ENSMUST00000165629ENSMUST00000167386ENSMUST00000167721ENSMUST00000171419ENSMUSG00000029581ENSMUST00000031565ENSMUST00000129306ENSMUST00000135293ENSMUST00000137552ENSMUST00000139131ENSMUST00000150622
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002V8_0001ENSG00000075618ENST00000382361ENST00000405801ENST00000447103ENST00000473330ENSG00000075624ENST00000331789ENST00000425660ENST00000462494ENST00000464611ENST00000484841ENSG00000228974ENST00000487308ENSG00000272719ENST00000609813CIL_0002V8_0002ENSMUSG00000029580ENSMUST00000100497ENSMUST00000106216ENSMUST00000163829ENSMUST00000167386ENSMUST00000167721ENSMUST00000171419ENSMUSG00000029581ENSMUST00000031565ENSMUST00000129306ENSMUST00000135293ENSMUST00000139131ENSMUST00000150622
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000075618 ENST00000382361 27.833±0.00 36.026±0.00 0.564±0.00 33.331±23.09 15.129±13.23 2.922±2.28 2.391±2.19 6.151±2.99 3.894±2.27 16.948±15.14 0.649±0.50 122.022±104.22 100.865±11.55 42.976±20.25
ENST00000405801 N/A N/A 1.138±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447103 N/A N/A N/A N/A N/A 0.566±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473330 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.274±0.00 2.336±0.00 N/A N/A
ENSG00000075624 ENST00000331789 1636.060±0.00 1512.510±0.00 13.539±0.00 376.087±112.04 599.363±330.71 1059.447±713.45 152.877±123.45 284.813±196.38 464.973±67.08 1222.303±1089.61 265.266±0.00 1345.335±833.45 2236.070±366.46 445.220±116.42
ENST00000414620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000425660 N/A N/A 46.065±0.00 N/A 62.947±0.00 84.810±0.00 10.236±0.00 N/A N/A 70.874±0.00 39.685±0.00 103.893±0.00 N/A N/A
ENST00000432588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462494 N/A N/A 12.127±0.00 N/A N/A N/A 6.613±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000464611 3204.210±0.00 3235.960±0.00 N/A 1686.100±0.00 2361.360±0.00 4399.980±0.00 223.468±0.00 1168.960±0.00 747.063±0.00 2389.490±0.00 251.487±0.00 2956.070±0.00 N/A 2154.970±0.00
ENST00000473257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 213.901±0.00 625.078±0.00 1302.230±0.00 148.239±0.00
ENST00000493945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000228974 ENST00000487308 N/A 0.060±0.00 N/A N/A N/A N/A N/A 0.122±0.00 N/A 0.057±0.00 N/A 0.215±0.03 N/A N/A
ENSG00000272719 ENST00000609813 0.041±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.135±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029580 ENSMUST00000100497 1834.755±169.67 1313.578±167.05 1580.135±167.17 714.058±440.70 1974.709±670.77 2838.387±215.98 316.109±38.67 811.190±63.75 660.254±174.53 2062.013±222.64 57.438±17.38 2439.984±1264.15 819.981±474.47 236.241±117.96
ENSMUST00000106216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 99.686±0.00
ENSMUST00000163829 N/A 1462.847±247.06 N/A N/A 2576.167±202.98 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164765 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.541±2.73 N/A N/A N/A
ENSMUST00000167721 N/A N/A N/A 191.982±0.00 1307.820±0.00 N/A N/A N/A N/A N/A N/A 295.809±0.00 547.188±73.79 64.232±0.00
ENSMUST00000171419 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 330.528±91.59 N/A
ENSMUSG00000029581 ENSMUST00000031565 46.051±4.44 35.226±4.26 33.424±2.27 167.319±84.32 95.986±30.15 9.485±0.93 12.094±1.67 9.077±0.94 8.697±8.83 9.146±1.34 2.751±1.39 88.217±34.87 81.661±34.20 1.804±1.31
ENSMUST00000129306 27.502±3.64 N/A N/A N/A 6.518±0.00 N/A 7.817±0.45 4.570±0.42 N/A N/A 1.972±0.00 33.137±11.47 99.574±49.44 3.136±0.21
ENSMUST00000135293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 122.839±0.00 84.851±0.00 2.796±0.00
ENSMUST00000137552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.418±0.34
ENSMUST00000150622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.307±0.00

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