C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002VR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000102910-ENSG00000196470 CGP 9606 16:48244296-48448402
GeneTranscriptPositionBiotype
ENSG00000102910 (LONP2)
lon peptidase 2, peroxisomal 		ENST00000285737 (LONP2-001) 48244296-48357349 protein_coding
ENST00000416006 (LONP2-004) 48244355-48347616 nonsense_mediated_decay
ENST00000535754 (LONP2-003) 48244333-48351899 protein_coding
ENST00000564259 (LONP2-008) 48348096-48361836 processed_transcript
ENST00000565185 (LONP2-010) 48356449-48362042 retained_intron
ENST00000565867 (LONP2-007) 48334312-48363122 protein_coding
ENST00000566719 (LONP2-009) 48355686-48362737 retained_intron
ENST00000566755 (LONP2-005) 48244388-48351851 nonsense_mediated_decay
ENST00000570174 (LONP2-006) 48262776-48303283 nonsense_mediated_decay
ENSG00000196470 (SIAH1)
siah E3 ubiquitin protein ligase 1 		ENST00000356721 (SIAH1-001) 48360531-48365901 protein_coding
ENST00000380006 (SIAH1-003) 48360531-48363882 protein_coding
ENST00000394725 (SIAH1-002) 48360531-48385450 protein_coding
ENST00000563745 (SIAH1-006) 48362133-48393955 protein_coding
ENST00000565620 (SIAH1-007) 48356364-48361792 processed_transcript
ENST00000567973 (SIAH1-005) 48387198-48417319 processed_transcript
ENST00000568007 (SIAH1-004) 48356364-48448402 nonsense_mediated_decay
ENST00000573005 (SIAH1-008) 48364850-48365724 processed_transcript
ENSG00000240793 (UBA52P8)
ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 8 		ENST00000498379 (UBA52P8-001) 48334471-48334854 processed_pseudogene
ENSG00000275909 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000447610 (Metazoa_SRP.1-342) 48432927-48433208 misc_RNA
ENSG00000280067 (CTD-2600H12.2)
 ENST00000623817 (CTD-2600H12.2-001) 48343755-48346058 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0002VR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000047866-ENSMUSG00000036840 CGP 10090 8:86624043-86746006
GeneTranscriptPositionBiotype
ENSMUSG00000036840 (Siah1a)
seven in absentia 1A 		ENSMUST00000045296 (Siah1a-201) 86723940-86746006 protein_coding
ENSMUSG00000047866 (Lonp2)
lon peptidase 2, peroxisomal 		ENSMUST00000034141 (Lonp2-001) 86624043-86716631 protein_coding
ENSMUST00000121673 (Lonp2-003) 86651569-86716632 protein_coding
ENSMUST00000122188 (Lonp2-004) 86624105-86716631 protein_coding
ENSMUST00000124911 (Lonp2-006) 86631397-86665841 processed_transcript
ENSMUST00000155433 (Lonp2-002) 86624043-86723873 nonsense_mediated_decay
ENSMUST00000155501 (Lonp2-005) 86624087-86641666 processed_transcript
ENSMUST00000163987 (Lonp2-201) 86651569-86716632 protein_coding
ENSMUSG00000064624 (Gm22305)
predicted gene, 22305 		ENSMUST00000082690 (Gm22305-201) 86671236-86671343 snRNA
ENSMUSG00000074178 (Gm10638)
predicted gene 10638 		ENSMUST00000098532 (Gm10638-201) 86745699-86746603 protein_coding
ENSMUSG00000082484 (Gm16177)
predicted gene 16177 		ENSMUST00000120728 (Gm16177-001) 86659318-86660035 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002VR_0001ENSG00000102910ENST00000285737ENST00000416006ENST00000535754ENST00000564259ENST00000565185ENST00000565867ENST00000566719ENST00000566755ENST00000570174ENSG00000196470ENST00000356721ENST00000380006ENST00000394725ENST00000563745ENST00000565620ENST00000567973ENST00000568007ENST00000573005ENSG00000240793ENST00000498379ENSG00000275909ENST00000447610ENSG00000280067ENST00000623817CIL_0002VR_0002ENSMUSG00000036840ENSMUST00000045296ENSMUSG00000047866ENSMUST00000034141ENSMUST00000121673ENSMUST00000122188ENSMUST00000124911ENSMUST00000155433ENSMUST00000155501ENSMUST00000163987ENSMUSG00000064624ENSMUST00000082690ENSMUSG00000074178ENSMUST00000098532ENSMUSG00000082484ENSMUST00000120728
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002VR_0001ENSG00000102910ENST00000285737ENST00000535754ENST00000566755ENSG00000196470ENST00000356721ENST00000380006ENST00000394725ENSG00000240793ENST00000498379ENSG00000275909ENST00000447610ENSG00000280067ENST00000623817CIL_0002VR_0002ENSMUSG00000036840ENSMUST00000045296ENSMUSG00000047866ENSMUST00000034141ENSMUST00000121673ENSMUST00000122188ENSMUST00000155501ENSMUST00000163987ENSMUSG00000064624ENSMUST00000082690ENSMUSG00000074178ENSMUST00000098532ENSMUSG00000082484ENSMUST00000120728
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000102910 ENST00000285737 6.281±0.00 4.281±0.00 2.886±0.00 5.560±1.04 5.465±2.49 4.386±0.98 4.336±1.41 8.758±1.20 6.639±0.63 2.944±0.00 4.345±1.90 5.994±1.15 4.450±1.31 4.463±0.00
ENST00000416006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535754 N/A N/A N/A 5.036±0.00 3.780±0.00 N/A 2.247±0.00 10.734±0.00 N/A 3.445±0.00 N/A 6.922±2.14 4.245±0.00 5.423±0.00
ENST00000564259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566755 N/A N/A 2.986±0.00 3.958±0.00 4.425±0.00 4.492±0.00 4.207±1.57 7.548±0.00 6.553±0.00 4.125±0.00 5.930±1.64 N/A N/A N/A
ENST00000570174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000196470 ENST00000356721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.186±2.19 N/A
ENST00000380006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.152±0.00 N/A 9.237±0.00
ENST00000394725 12.857±0.00 10.999±0.00 N/A 12.725±0.00 12.249±0.00 9.569±0.00 5.675±0.00 9.900±0.00 N/A 9.019±0.00 8.764±0.00 10.899±3.45 11.362±2.05 17.868±6.07
ENST00000563745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568007 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000240793 ENST00000498379 0.147±0.00 0.523±0.00 1.544±0.00 0.629±0.01 0.223±0.00 0.523±0.27 0.331±0.00 1.910±1.64 0.149±0.06 0.451±0.14 0.090±0.00 0.771±0.50 0.138±0.00 0.289±0.19
ENSG00000275909 ENST00000447610 0.484±0.00 0.437±0.00 N/A 0.501±0.00 0.620±0.00 N/A N/A 0.928±0.00 0.266±0.00 0.291±0.00 0.065±0.00 1.143±0.00 N/A 0.430±0.16
ENSG00000280067 ENST00000623817 0.277±0.00 0.981±0.00 0.846±0.00 0.497±0.17 0.892±0.52 0.433±0.36 0.410±0.26 0.712±0.49 0.522±0.31 0.693±0.33 0.282±0.22 0.515±0.42 0.083±0.03 0.375±0.16
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036840 ENSMUST00000045296 16.879±4.32 16.675±5.20 14.406±1.54 35.838±1.54 16.710±3.51 12.517±1.77 7.503±2.06 11.209±2.73 6.828±2.47 20.430±3.18 3.405±0.57 19.488±8.40 5.785±3.12 16.318±0.84
ENSMUSG00000047866 ENSMUST00000034141 14.933±3.69 14.883±0.60 18.423±0.34 19.072±7.83 9.634±0.86 5.919±1.91 6.694±1.29 10.424±1.67 18.307±7.59 8.856±3.05 17.161±0.45 12.982±7.20 48.856±18.14 6.918±2.56
ENSMUST00000121673 16.167±0.89 N/A 13.884±2.05 7.124±0.00 15.107±0.00 N/A 4.581±1.10 7.036±0.50 7.454±2.00 N/A N/A 11.982±2.45 12.698±0.30 2.263±0.00
ENSMUST00000122188 18.327±1.23 15.115±1.65 N/A 6.282±0.00 17.609±3.13 8.311±0.93 6.397±2.30 10.633±2.98 43.927±17.63 7.801±0.83 N/A 10.519±2.80 N/A 2.230±0.75
ENSMUST00000124911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155501 74.203±12.62 132.462±25.08 N/A 24.121±0.00 162.437±50.27 72.467±10.59 22.303±7.28 47.814±17.49 135.750±83.17 63.217±10.86 N/A 99.998±13.78 N/A 9.219±2.84
ENSMUST00000163987 N/A N/A N/A N/A 15.958±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000064624 ENSMUST00000082690 N/A N/A N/A N/A N/A N/A 2556.410±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000074178 ENSMUST00000098532 3.625±0.00 1.870±0.13 N/A N/A N/A 1.792±0.09 N/A N/A N/A N/A N/A 7.317±2.90 N/A 138.690±18.83
ENSMUSG00000082484 ENSMUST00000120728 0.188±0.05 0.235±0.14 0.096±0.02 0.184±0.00 0.400±0.09 0.360±0.13 0.091±0.00 0.392±0.23 0.361±0.51 0.278±0.05 N/A 0.481±0.22 0.263±0.14 0.121±0.03

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