C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002XI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125813-ENSG00000125798 CGP 9606 20:21705659-22585455
GeneTranscriptPositionBiotype
ENSG00000125798 (FOXA2)
forkhead box A2 		ENST00000377115 (FOXA2-001) 22581005-22585455 protein_coding
ENST00000419308 (FOXA2-002) 22581005-22584463 protein_coding
ENSG00000125813 (PAX1)
paired box 1 		ENST00000398485 (PAX1-001) 21705659-21715982 protein_coding
ENST00000444366 (PAX1-002) 21706223-21715109 protein_coding
ENST00000460221 (PAX1-003) 21705687-21709424 processed_transcript
ENST00000485038 (PAX1-004) 21708270-21709277 retained_intron
ENST00000613128 (PAX1-201) 21705659-21718486 protein_coding
ENSG00000204684 (RP5-1004I9.1)
 ENST00000377121 (RP5-1004I9.1-001) 22400351-22420643 lincRNA
ENSG00000225170 (RP5-828K20.1)
 ENST00000413920 (RP5-828K20.1-001) 22272052-22273454 processed_pseudogene
ENSG00000225321 (LINC01427)
long intergenic non-protein coding RNA 1427 		ENST00000420928 (LINC01427-001) 22280228-22282672 lincRNA
ENSG00000233015 (SLC25A6P1)
solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6, pseudogene 1 		ENST00000412123 (SLC25A6P1-001) 21742303-21743077 processed_pseudogene
ENSG00000234435 (LINC01432)
long intergenic non-protein coding RNA 1432 		ENST00000449427 (LINC01432-001) 22054090-22074654 lincRNA
ENSG00000234862 (RP5-1097P24.1)
 ENST00000439450 (RP5-1097P24.1-001) 22220554-22223283 lincRNA
ENSG00000238034 (RP5-1185K9.1)
 ENST00000438222 (RP5-1185K9.1-001) 21947647-21970783 lincRNA
ENSG00000259974 (LINC00261)
long intergenic non-protein coding RNA 261 		ENST00000420070 (LINC00261-005) 22547671-22560924 lincRNA
ENST00000564492 (LINC00261-003) 22560553-22578642 lincRNA
ENST00000609300 (LINC00261-004) 22560792-22564268 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_0002XI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037034-ENSMUSG00000037025 CGP 10090 2:147361925-148046969
GeneTranscriptPositionBiotype
ENSMUSG00000037025 (Foxa2)
forkhead box A2 		ENSMUST00000047315 (Foxa2-001) 148042877-148046969 protein_coding
ENSMUST00000109964 (Foxa2-002) 148042877-148045948 protein_coding
ENSMUST00000146242 (Foxa2-003) 148044240-148045464 processed_transcript
ENSMUST00000172928 (Foxa2-004) 148043542-148046896 protein_coding
ENSMUSG00000037034 (Pax1)
paired box 1 		ENSMUST00000109968 (Pax1-001) 147364994-147375053 protein_coding
ENSMUST00000126068 (Pax1-002) 147361925-147367878 protein_coding
ENSMUST00000156584 (Pax1-003) 147368282-147393295 retained_intron
ENSMUSG00000051986 (A530006G24Rik)
RIKEN cDNA A530006G24 gene 		ENSMUST00000152542 (A530006G24Rik-001) 147710693-147717632 lincRNA
ENSMUSG00000081741 (Gm14106)
predicted gene 14106 		ENSMUST00000119382 (Gm14106-001) 147668015-147668452 processed_pseudogene
ENSMUSG00000086141 (9030622O22Rik)
RIKEN cDNA 9030622O22 gene 		ENSMUST00000129082 (9030622O22Rik-001) 147944740-147976185 lincRNA
ENSMUST00000132070 (9030622O22Rik-003) 147972830-148038270 lincRNA
ENSMUST00000136555 (9030622O22Rik-002) 147972676-148040203 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002XI_0001ENSG00000125798ENST00000377115ENST00000419308ENSG00000125813ENST00000398485ENST00000444366ENST00000460221ENST00000485038ENST00000613128ENSG00000204684ENST00000377121ENSG00000225170ENST00000413920ENSG00000225321ENST00000420928ENSG00000233015ENST00000412123ENSG00000234435ENST00000449427ENSG00000234862ENST00000439450ENSG00000238034ENST00000438222ENSG00000259974ENST00000420070ENST00000564492ENST00000609300CIL_0002XI_0002ENSMUSG00000037025ENSMUST00000047315ENSMUST00000109964ENSMUST00000146242ENSMUST00000172928ENSMUSG00000037034ENSMUST00000109968ENSMUST00000126068ENSMUST00000156584ENSMUSG00000051986ENSMUST00000152542ENSMUSG00000081741ENSMUST00000119382ENSMUSG00000086141ENSMUST00000129082ENSMUST00000132070ENSMUST00000136555
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002XI_0001ENSG00000125798ENST00000377115ENST00000419308ENSG00000125813ENST00000398485ENST00000444366ENST00000460221ENST00000613128ENSG00000204684ENST00000377121ENSG00000225170ENST00000413920ENSG00000225321ENST00000420928ENSG00000233015ENST00000412123ENSG00000234435ENST00000449427ENSG00000234862ENST00000439450ENSG00000238034ENST00000438222ENSG00000259974ENST00000420070ENST00000564492CIL_0002XI_0002ENSMUSG00000037025ENSMUST00000047315ENSMUST00000109964ENSMUST00000146242ENSMUST00000172928ENSMUSG00000037034ENSMUST00000109968ENSMUST00000126068ENSMUST00000156584ENSMUSG00000051986ENSMUST00000152542ENSMUSG00000081741ENSMUST00000119382ENSMUSG00000086141ENSMUST00000129082ENSMUST00000132070ENSMUST00000136555
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125798 ENST00000377115 0.254±0.00 N/A N/A 0.011±0.00 2.607±0.00 1.260±0.54 N/A 1.601±1.48 16.617±0.00 3.145±1.41 N/A 16.350±13.27 0.026±0.00 0.364±0.14
ENST00000419308 N/A N/A N/A N/A 0.762±0.00 N/A N/A N/A N/A 1.750±0.67 N/A 8.995±4.93 N/A N/A
ENSG00000125813 ENST00000398485 N/A N/A N/A N/A 0.031±0.00 N/A N/A N/A N/A 0.125±0.00 0.289±0.00 0.022±0.00 0.017±0.00 0.058±0.00
ENST00000444366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.031±0.00 0.065±0.00 0.081±0.00
ENST00000460221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.335±0.00 N/A
ENST00000485038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.019±0.00 0.025±0.00
ENSG00000204684 ENST00000377121 N/A N/A N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A N/A 0.026±0.00 N/A 0.776±0.32
ENSG00000225170 ENST00000413920 0.057±0.00 N/A N/A 0.006±0.00 0.005±0.00 0.035±0.00 0.017±0.00 0.011±0.00 0.029±0.00 N/A 0.010±0.00 N/A N/A 0.021±0.00
ENSG00000225321 ENST00000420928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.086±0.00
ENSG00000233015 ENST00000412123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 0.046±0.00
ENSG00000234435 ENST00000449427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.107±0.00
ENSG00000234862 ENST00000439450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.072±0.00
ENSG00000238034 ENST00000438222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.319±0.00
ENSG00000259974 ENST00000420070 0.070±0.00 N/A N/A 0.075±0.00 0.177±0.00 N/A 0.098±0.00 0.104±0.00 N/A N/A N/A 0.021±0.00 N/A N/A
ENST00000564492 0.012±0.00 0.068±0.00 N/A 0.021±0.01 8.890±8.85 0.752±0.30 0.002±0.00 1.281±1.26 25.696±0.00 0.375±0.19 0.027±0.00 0.760±0.57 0.006±0.00 0.036±0.02
ENST00000609300 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037025 ENSMUST00000047315 N/A N/A N/A N/A N/A N/A N/A N/A 5.296±3.48 5.452±0.00 N/A 0.703±0.33 1.351±0.00 N/A
ENSMUST00000109964 2.889±1.36 N/A 0.012±0.01 1.140±0.78 0.064±0.05 26.282±7.78 0.090±0.01 0.015±0.00 7.581±5.04 23.797±6.37 N/A 2.236±0.90 4.690±3.98 0.036±0.03
ENSMUST00000146242 N/A 0.060±0.03 0.049±0.00 0.169±0.00 0.040±0.01 N/A N/A N/A N/A N/A N/A N/A N/A 0.026±0.00
ENSMUST00000172928 0.032±0.00 N/A 0.029±0.01 1.840±0.00 N/A N/A N/A 0.069±0.00 2.520±1.75 N/A 0.242±0.00 N/A N/A 0.033±0.01
ENSMUSG00000037034 ENSMUST00000109968 0.015±0.00 0.012±0.00 0.013±0.00 0.248±0.04 0.294±0.12 N/A 0.030±0.01 0.038±0.02 0.015±0.01 0.039±0.02 0.013±0.00 0.130±0.07 0.064±0.05 3.147±1.63
ENSMUST00000126068 N/A N/A N/A N/A N/A N/A 0.005±0.00 0.056±0.00 N/A 0.021±0.00 N/A 0.130±0.05 N/A 0.306±0.00
ENSMUST00000156584 N/A N/A N/A N/A 0.121±0.00 N/A N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000051986 ENSMUST00000152542 N/A N/A N/A 0.019±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.017±0.01 N/A
ENSMUSG00000081741 ENSMUST00000119382 N/A 0.728±0.21 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.130±0.00 N/A N/A
ENSMUSG00000086141 ENSMUST00000129082 0.556±0.08 N/A N/A 0.020±0.00 N/A 2.516±0.00 N/A N/A 2.537±1.80 0.366±0.00 N/A 0.139±0.06 0.445±0.23 0.047±0.02
ENSMUST00000132070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.173±0.07 0.279±0.17 N/A
ENSMUST00000136555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.139±0.00 0.574±0.35 N/A

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