C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002ZZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000035167-ENSDARG00000090667 CGP 7955 10:37928081-37955780
GeneTranscriptPositionBiotype
ENSDARG00000035167 (mrpl48)
mitochondrial ribosomal protein L48 		ENSDART00000122375 (mrpl48-001) 37928081-37935762 protein_coding
ENSDARG00000090667 (rab6a)
RAB6A, member RAS oncogene family 		ENSDART00000123613 (rab6a-001) 37939678-37955780 protein_coding
ENSDART00000124579 (rab6a-201) 37939697-37955776 protein_coding
ENSDART00000126805 (rab6a-003) 37945921-37949796 retained_intron
ENSDART00000129190 (rab6a-002) 37939728-37954699 protein_coding
ENSDART00000135993 (rab6a-004) 37949703-37950926 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_0002ZZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030706-ENSMUSG00000030704 CGP 10090 7:100545751-100641268
GeneTranscriptPositionBiotype
ENSMUSG00000030704 (Rab6a)
RAB6A, member RAS oncogene family 		ENSMUST00000032946 (Rab6a-001) 100607586-100641268 protein_coding
ENSMUST00000098252 (Rab6a-002) 100607690-100641268 protein_coding
ENSMUST00000107048 (Rab6a-003) 100607410-100641268 protein_coding
ENSMUST00000123960 (Rab6a-004) 100634348-100639363 retained_intron
ENSMUSG00000081359 (Cox20-ps)
COX20 Cox2 chaperone, pseudogene 		ENSMUST00000119872 (Cox20-ps-001) 100580267-100580619 processed_pseudogene
ENSMUSG00000082210 (Gm14382)
predicted gene 14382 		ENSMUST00000117374 (Gm14382-001) 100624518-100624954 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002ZZ_0001ENSDARG00000035167ENSDART00000122375ENSDARG00000090667ENSDART00000123613ENSDART00000124579ENSDART00000126805ENSDART00000129190ENSDART00000135993CIL_0002ZZ_0002ENSMUSG00000030704ENSMUST00000032946ENSMUST00000098252ENSMUST00000107048ENSMUST00000123960ENSMUSG00000081359ENSMUST00000119872ENSMUSG00000082210ENSMUST00000117374
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002ZZ_0001ENSDARG00000035167ENSDART00000122375ENSDARG00000090667ENSDART00000123613ENSDART00000124579ENSDART00000129190CIL_0002ZZ_0002ENSMUSG00000030704ENSMUST00000032946ENSMUST00000098252ENSMUST00000107048ENSMUSG00000081359ENSMUST00000119872ENSMUSG00000082210ENSMUST00000117374
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000035167 ENSDART00000122375 N/A N/A N/A 11.936±6.25 N/A N/A 11.519±8.79 10.211±8.98 1.528±0.00 N/A 9.160±0.00 N/A N/A N/A
ENSDARG00000090667 ENSDART00000123613 N/A N/A N/A 3.442±1.77 N/A N/A 1.649±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000124579 N/A N/A N/A 27.191±12.15 N/A N/A 35.677±15.44 18.912±9.33 0.324±0.00 N/A N/A N/A N/A N/A
ENSDART00000126805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000129190 N/A N/A N/A 1.853±0.00 N/A N/A 2.691±0.47 N/A 0.222±0.00 N/A N/A N/A N/A N/A
ENSDART00000135993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030704 ENSMUST00000032946 13.428±5.87 20.113±5.26 34.821±4.46 60.504±13.31 23.680±15.15 39.783±7.20 9.187±0.48 11.716±2.17 15.738±8.34 31.138±6.59 26.445±3.35 39.954±18.38 18.476±7.99 12.641±5.09
ENSMUST00000098252 10.086±1.47 47.730±10.82 13.644±1.66 N/A 7.217±1.31 18.702±3.81 5.680±0.73 8.142±3.16 6.390±1.49 13.063±3.23 N/A 19.658±8.84 10.605±5.13 N/A
ENSMUST00000107048 N/A N/A N/A N/A 5.164±0.00 N/A N/A N/A N/A N/A N/A 9.524±3.53 9.695±2.52 2.293±0.00
ENSMUST00000123960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081359 ENSMUST00000119872 N/A N/A 0.084±0.04 0.169±0.13 N/A N/A N/A N/A 0.124±0.09 N/A N/A 0.410±0.00 0.149±0.07 0.188±0.01
ENSMUSG00000082210 ENSMUST00000117374 0.108±0.00 N/A 0.085±0.00 0.237±0.05 N/A N/A N/A 0.109±0.00 0.044±0.02 N/A 0.125±0.00 0.410±0.06 0.185±0.03 0.116±0.00

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