C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00030U_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000105404-ENSG00000105409 CGP 9606 19:41956681-41997497
GeneTranscriptPositionBiotype
ENSG00000105404 (RABAC1)
Rab acceptor 1 (prenylated) 		ENST00000222008 (RABAC1-001) 41956681-41959390 protein_coding
ENST00000595226 (RABAC1-009) 41956692-41957499 retained_intron
ENST00000596171 (RABAC1-002) 41957034-41959310 retained_intron
ENST00000598057 (RABAC1-010) 41956681-41957342 retained_intron
ENST00000599219 (RABAC1-003) 41958152-41959302 retained_intron
ENST00000600292 (RABAC1-007) 41956681-41959266 protein_coding
ENST00000601028 (RABAC1-008) 41956686-41958914 protein_coding
ENST00000601078 (RABAC1-005) 41956781-41959275 protein_coding
ENST00000601476 (RABAC1-006) 41957859-41959269 retained_intron
ENST00000601891 (RABAC1-004) 41956681-41959299 protein_coding
ENSG00000105409 (ATP1A3)
ATPase, Na+/K+ transporting, alpha 3 polypeptide 		ENST00000302102 (ATP1A3-001) 41966582-41994276 protein_coding
ENST00000441343 (ATP1A3-002) 41966582-41994214 non_stop_decay
ENST00000465007 (ATP1A3-009) 41988205-41988557 retained_intron
ENST00000468774 (ATP1A3-006) 41987999-41993522 processed_transcript
ENST00000473086 (ATP1A3-011) 41985067-41997497 protein_coding
ENST00000485672 (ATP1A3-003) 41984254-41985342 retained_intron
ENST00000543770 (ATP1A3-007) 41966621-41993467 protein_coding
ENST00000545399 (ATP1A3-008) 41966584-41994260 protein_coding
ENST00000602133 (ATP1A3-005) 41966584-41994079 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_00030U_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000003380-ENSMUSG00000040907 CGP 10090 7:24969750-25005957
GeneTranscriptPositionBiotype
ENSMUSG00000003380 (Rabac1)
Rab acceptor 1 (prenylated) 		ENSMUST00000076961 (Rabac1-201) 24969750-24972728 protein_coding
ENSMUSG00000040907 (Atp1a3)
ATPase, Na+/K+ transporting, alpha 3 polypeptide 		ENSMUST00000080882 (Atp1a3-001) 24978167-25005937 protein_coding
ENSMUST00000102858 (Atp1a3-002) 24978167-25005895 protein_coding
ENSMUST00000125444 (Atp1a3-005) 25000571-25005957 retained_intron
ENSMUST00000146595 (Atp1a3-003) 24992177-25005907 retained_intron
ENSMUST00000154077 (Atp1a3-004) 24998659-25001197 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00030U_0001ENSG00000105404ENST00000222008ENST00000595226ENST00000596171ENST00000598057ENST00000599219ENST00000600292ENST00000601028ENST00000601078ENST00000601476ENST00000601891ENSG00000105409ENST00000302102ENST00000441343ENST00000465007ENST00000468774ENST00000473086ENST00000485672ENST00000543770ENST00000545399ENST00000602133CIL_00030U_0002ENSMUSG00000003380ENSMUST00000076961ENSMUSG00000040907ENSMUST00000080882ENSMUST00000102858ENSMUST00000125444ENSMUST00000146595ENSMUST00000154077
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00030U_0001ENSG00000105404ENST00000222008ENST00000598057ENST00000600292ENST00000601078ENST00000601476ENSG00000105409ENST00000302102ENST00000441343ENST00000468774ENST00000473086ENST00000485672ENST00000543770ENST00000545399ENST00000602133CIL_00030U_0002ENSMUSG00000003380ENSMUST00000076961ENSMUSG00000040907ENSMUST00000080882ENSMUST00000102858ENSMUST00000125444ENSMUST00000146595ENSMUST00000154077
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000105404 ENST00000222008 121.445±0.00 154.415±0.00 3.304±0.00 54.019±38.69 55.591±47.68 75.566±70.56 11.271±10.33 67.893±60.13 48.332±42.54 63.181±57.56 25.312±19.73 97.851±45.69 113.613±7.13 120.294±40.30
ENST00000595226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000596171 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000598057 N/A N/A N/A N/A N/A 3.153±0.00 N/A N/A N/A N/A N/A 0.639±0.00 N/A N/A
ENST00000599219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000600292 47.530±0.00 N/A N/A N/A 22.588±0.00 N/A 7.488±0.00 N/A 45.130±0.00 24.363±0.00 7.623±0.00 23.076±0.00 58.081±2.58 N/A
ENST00000601028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000601078 N/A N/A N/A N/A N/A N/A 4.289±0.00 N/A N/A N/A 1.319±0.00 N/A N/A N/A
ENST00000601476 N/A N/A 0.757±0.00 N/A N/A N/A 0.694±0.00 N/A 2.554±0.00 N/A N/A N/A N/A N/A
ENST00000601891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000105409 ENST00000302102 0.069±0.00 N/A N/A 102.173±65.79 N/A 4.709±0.00 56.247±46.28 N/A 0.284±0.00 N/A N/A N/A 0.049±0.00 17.675±4.11
ENST00000441343 N/A 0.598±0.00 N/A N/A N/A N/A N/A N/A N/A 0.207±0.00 N/A 0.227±0.12 0.113±0.06 34.882±22.84
ENST00000465007 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468774 N/A N/A N/A N/A N/A N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A
ENST00000473086 N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.00 N/A N/A 0.126±0.00 N/A N/A
ENST00000485672 N/A N/A N/A N/A 0.291±0.00 N/A N/A 0.114±0.00 0.022±0.00 0.138±0.00 0.235±0.00 0.113±0.00 N/A N/A
ENST00000543770 N/A 0.525±0.00 N/A N/A N/A N/A N/A 0.007±0.00 0.016±0.00 N/A 0.128±0.13 0.093±0.06 0.555±0.00 N/A
ENST00000545399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.779±0.00
ENST00000602133 N/A N/A N/A 12.172±0.00 0.092±0.02 N/A N/A 0.019±0.00 N/A 0.095±0.00 0.019±0.00 0.029±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003380 ENSMUST00000076961 237.016±40.25 364.333±32.87 224.516±29.34 73.827±36.00 278.813±79.84 185.689±26.15 190.556±23.63 261.804±21.38 79.396±21.38 406.344±50.24 110.993±7.18 270.803±128.05 81.568±48.86 99.098±48.26
ENSMUSG00000040907 ENSMUST00000080882 2.961±0.23 56.430±6.16 0.310±0.09 330.184±341.58 6.500±1.59 0.619±0.28 0.415±0.14 0.522±0.12 0.226±0.18 2.277±0.13 0.078±0.04 8.487±5.96 0.371±0.19 0.080±0.03
ENSMUST00000102858 N/A N/A 0.027±0.00 N/A N/A N/A N/A 0.062±0.00 0.043±0.01 0.313±0.07 N/A 1.168±0.00 N/A N/A
ENSMUST00000125444 N/A N/A N/A N/A N/A N/A N/A N/A 0.073±0.00 N/A N/A N/A N/A 0.625±0.00
ENSMUST00000146595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00
ENSMUST00000154077 N/A N/A N/A N/A N/A N/A N/A N/A 0.161±0.05 N/A N/A N/A N/A N/A

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