C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000311_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000172780-ENSG00000261796 CGP 9606 3:129087569-129161036
GeneTranscriptPositionBiotype
ENSG00000172780 (RAB43)
RAB43, member RAS oncogene family 		ENST00000315150 (RAB43-001) 129087569-129121790 protein_coding
ENST00000393304 (RAB43-002) 129087569-129121804 protein_coding
ENST00000393305 (RAB43-004) 129087569-129122150 protein_coding
ENST00000393307 (RAB43-005) 129087569-129122014 protein_coding
ENST00000393308 (RAB43-003) 129087569-129121922 protein_coding
ENST00000457077 (RAB43-006) 129095115-129122801 protein_coding
ENST00000476465 (RAB43-007) 129090494-129121781 protein_coding
ENST00000615093 (RAB43-201) 129092514-129121804 protein_coding
ENSG00000240682 (ISY1)
ISY1 splicing factor homolog (S. cerevisiae) 		ENST00000273541 (ISY1-004) 129129374-129161048 protein_coding
ENST00000393292 (ISY1-002) 129130017-129161037 protein_coding
ENST00000393295 (ISY1-001) 129127415-129161293 protein_coding
ENST00000471306 (ISY1-007) 129129791-129130703 retained_intron
ENST00000471497 (ISY1-005) 129129374-129156889 processed_transcript
ENST00000485703 (ISY1-003) 129134075-129161028 nonsense_mediated_decay
ENST00000496163 (ISY1-006) 129129879-129145874 protein_coding
ENSG00000261796 (ISY1-RAB43)
ISY1-RAB43 readthrough 		ENST00000418265 (ISY1-RAB43-001) 129087575-129161036 protein_coding
ENSG00000273174 (RP11-434H6.6)
 ENST00000608909 (RP11-434H6.6-001) 129123439-129124003 antisense
CIL_000311_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030055-ENSMUSG00000030056 CGP 10090 6:87788853-87838759
GeneTranscriptPositionBiotype
ENSMUSG00000030056 (Isy1)
ISY1 splicing factor homolog (S. cerevisiae) 		ENSMUST00000089497 (Isy1-201) 87818447-87838759 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000311_0001ENSG00000172780ENST00000315150ENST00000393304ENST00000393305ENST00000393307ENST00000393308ENST00000457077ENST00000476465ENST00000615093ENSG00000240682ENST00000273541ENST00000393292ENST00000393295ENST00000471306ENST00000471497ENST00000485703ENST00000496163ENSG00000261796ENST00000418265ENSG00000273174ENST00000608909CIL_000311_0002ENSMUSG00000030056ENSMUST00000089497
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000311_0001ENSG00000172780ENST00000315150ENST00000393307ENSG00000240682ENST00000273541ENST00000393292ENST00000393295ENST00000471306ENST00000485703ENSG00000261796ENST00000418265ENSG00000273174ENST00000608909CIL_000311_0002ENSMUSG00000030056ENSMUST00000089497
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000172780 ENST00000315150 4.145±0.00 4.257±0.00 N/A N/A 3.291±0.00 N/A N/A 3.475±0.00 12.147±0.00 7.317±0.00 N/A N/A N/A N/A
ENST00000393304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000393305 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000393307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.981±0.00 N/A N/A
ENST00000393308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000240682 ENST00000273541 7.385±0.00 10.609±0.00 1.643±0.00 2.212±0.19 4.685±1.70 3.805±2.85 2.191±1.45 6.740±0.00 0.968±0.00 3.382±2.20 2.661±0.86 5.255±1.92 9.464±1.49 7.264±0.00
ENST00000393292 5.679±0.00 N/A N/A 2.240±1.35 3.642±0.00 6.582±4.29 2.007±1.17 N/A 2.467±0.00 N/A 3.176±1.75 7.755±4.52 N/A 7.233±0.00
ENST00000393295 2.242±0.00 4.096±0.00 N/A 1.103±0.87 3.503±0.00 1.672±1.09 0.614±0.41 1.688±1.03 1.199±0.00 1.671±0.97 0.979±0.00 3.457±1.28 3.182±0.67 2.731±0.19
ENST00000471306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.351±0.00 24.682±0.00 N/A
ENST00000471497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485703 N/A N/A 2.307±0.00 1.120±0.00 N/A N/A N/A N/A 4.303±0.00 3.008±0.00 N/A 9.856±4.51 20.158±0.00 12.667±0.00
ENST00000496163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000261796 ENST00000418265 1.871±0.00 4.421±0.00 0.854±0.00 1.144±0.75 1.656±0.22 1.601±0.06 0.854±0.53 2.121±0.07 1.898±1.11 2.747±1.62 N/A 6.065±1.48 4.801±0.46 3.627±0.47
ENSG00000273174 ENST00000608909 0.745±0.00 3.095±0.00 N/A 0.235±0.00 0.493±0.00 N/A 0.051±0.00 0.137±0.00 0.554±0.00 0.398±0.00 N/A 0.210±0.00 0.201±0.00 0.292±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030056 ENSMUST00000089497 8.324±2.38 7.910±1.91 11.356±1.05 8.404±2.56 8.911±4.03 7.536±0.91 3.980±0.63 7.652±0.59 13.229±10.19 9.412±1.25 6.441±0.70 11.111±4.34 16.059±5.26 4.790±2.42

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