C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000317_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000156273-ENSG00000171189 CGP 9606 21:29194071-29940033
GeneTranscriptPositionBiotype
ENSG00000156273 (BACH1)
BTB and CNC homology 1, basic leucine zipper transcription factor 1 		ENST00000286800 (BACH1-001) 29298871-29346148 protein_coding
ENST00000399921 (BACH1-002) 29299416-29346148 protein_coding
ENST00000422809 (BACH1-006) 29327129-29630751 protein_coding
ENST00000435072 (BACH1-003) 29305203-29326336 protein_coding
ENST00000447177 (BACH1-005) 29300802-29326484 protein_coding
ENST00000451655 (BACH1-004) 29300133-29326498 protein_coding
ENST00000462262 (BACH1-008) 29596040-29630747 processed_transcript
ENST00000468059 (BACH1-007) 29327276-29630751 protein_coding
ENST00000546469 (BACH1-013) 29194147-29321355 protein_coding
ENST00000547141 (BACH1-012) 29194147-29321355 protein_coding
ENST00000548219 (BACH1-010) 29194071-29321355 protein_coding
ENST00000548467 (BACH1-009) 29299683-29321355 protein_coding
ENST00000550131 (BACH1-011) 29194147-29321355 protein_coding
ENSG00000174680 (GRIK1-AS1)
GRIK1 antisense RNA 1 		ENST00000309331 (GRIK1-AS1-001) 29748938-29764002 antisense
ENST00000412579 (GRIK1-AS1-004) 29758831-29764002 antisense
ENST00000413131 (GRIK1-AS1-005) 29760394-29764002 antisense
ENST00000423221 (GRIK1-AS1-003) 29748947-29764002 antisense
ENST00000455392 (GRIK1-AS1-002) 29748175-29763680 antisense
ENSG00000228817 (BACH1-IT2)
BACH1 intronic transcript 2 (non-protein coding) 		ENST00000436529 (BACH1-IT2-001) 29370947-29373709 lincRNA
ENST00000608072 (BACH1-IT2-002) 29370623-29373302 lincRNA
ENSG00000232118 (BACH1-AS1)
BACH1 antisense RNA 1 		ENST00000449923 (BACH1-AS1-001) 29370019-29371226 lincRNA
ENST00000615718 (BACH1-AS1-002) 29370059-29376339 lincRNA
ENSG00000234293 (BACH1-IT3)
BACH1 intronic transcript 3 (non-protein coding) 		ENST00000429843 (BACH1-IT3-001) 29496047-29500386 sense_intronic
ENSG00000236056 (GAPDHP14)
glyceraldehyde-3-phosphate dehydrogenase pseudogene 14 		ENST00000450472 (GAPDHP14-001) 29222321-29223257 processed_pseudogene
ENSG00000248476 (BACH1-IT1)
BACH1 intronic transcript 1 (non-protein coding) 		ENST00000504298 (BACH1-IT1-001) 29351634-29361894 sense_intronic
ENSG00000273017 (AP000240.9)
 ENST00000609910 (AP000240.9-001) 29359002-29359453 sense_intronic
ENSG00000273464 (RP11-313P22.1)
 ENST00000608759 (RP11-313P22.1-001) 29657406-29657831 antisense

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_000317_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025612-ENSMUSG00000022935 CGP 10090 16:87698945-88056176
GeneTranscriptPositionBiotype
ENSMUSG00000022935 (Grik1)
glutamate receptor, ionotropic, kainate 1 		ENSMUST00000023652 (Grik1-201) 87896196-88056176 protein_coding
ENSMUST00000072256 (Grik1-202) 87896196-88056176 protein_coding
ENSMUST00000114137 (Grik1-203) 87912421-88056176 protein_coding
ENSMUSG00000025612 (Bach1)
BTB and CNC homology 1 		ENSMUST00000026703 (Bach1-001) 87698945-87733346 protein_coding
ENSMUST00000151046 (Bach1-003) 87698965-87732601 processed_transcript
ENSMUST00000156958 (Bach1-002) 87699004-87722920 retained_intron
ENSMUSG00000055972 (2810407A14Rik)
RIKEN cDNA 2810407A14 gene 		ENSMUST00000069809 (2810407A14Rik-002) 87784075-87793602 lincRNA
ENSMUST00000189929 (2810407A14Rik-001) 87787572-87839293 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000317_0001ENSG00000156273ENST00000286800ENST00000399921ENSG00000174680ENST00000309331ENST00000412579ENST00000413131ENST00000423221ENST00000455392ENSG00000228817ENST00000436529ENST00000608072ENSG00000232118ENST00000449923ENST00000615718ENSG00000234293ENST00000429843ENSG00000236056ENST00000450472ENSG00000248476ENST00000504298ENSG00000273017ENST00000609910ENSG00000273464ENST00000608759CIL_000317_0002ENSMUSG00000022935ENSMUST00000023652ENSMUST00000072256ENSMUST00000114137ENSMUSG00000025612ENSMUST00000026703ENSMUST00000156958ENSMUSG00000055972ENSMUST00000069809ENSMUST00000189929
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000156273 ENST00000286800 5.569±0.00 4.557±0.00 N/A 2.127±0.81 3.220±1.73 4.861±0.53 1.635±0.15 3.364±0.00 2.048±0.08 8.412±3.06 13.921±0.00 3.673±1.90 7.436±1.40 6.239±2.43
ENST00000399921 0.842±0.00 N/A N/A N/A N/A N/A 0.647±0.00 0.480±0.00 2.497±0.00 1.688±0.32 N/A 1.378±0.00 1.642±0.11 2.954±0.00
ENST00000422809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435072 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451655 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468059 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547141 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000174680 ENST00000309331 N/A N/A N/A 0.108±0.04 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000412579 N/A N/A N/A 0.089±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.060±0.00
ENST00000413131 0.049±0.00 0.017±0.00 N/A N/A 0.095±0.00 0.949±0.00 0.046±0.00 N/A N/A N/A N/A 0.161±0.11 N/A N/A
ENST00000423221 N/A 0.107±0.00 N/A 0.371±0.00 N/A N/A N/A 0.059±0.00 N/A 0.368±0.00 N/A N/A N/A N/A
ENST00000455392 N/A N/A N/A 0.055±0.00 N/A N/A N/A N/A N/A 0.762±0.00 N/A 0.020±0.00 N/A N/A
ENSG00000228817 ENST00000436529 N/A N/A N/A N/A N/A 0.280±0.18 0.034±0.00 N/A 0.086±0.00 N/A N/A 0.116±0.00 0.067±0.01 0.047±0.00
ENST00000608072 N/A 0.257±0.00 N/A 0.087±0.00 0.631±0.59 N/A 0.153±0.07 0.177±0.00 N/A N/A 0.044±0.00 0.142±0.13 0.151±0.10 0.104±0.05
ENSG00000232118 ENST00000449923 0.311±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.368±0.00 N/A N/A N/A
ENST00000615718 0.235±0.00 0.406±0.00 0.575±0.00 0.100±0.00 0.214±0.00 0.129±0.00 0.056±0.01 0.337±0.00 0.032±0.00 0.212±0.00 0.434±0.41 0.070±0.02 N/A 0.293±0.00
ENSG00000234293 ENST00000429843 N/A 0.036±0.00 0.237±0.00 N/A N/A N/A N/A 0.106±0.00 N/A N/A N/A N/A 0.145±0.00 N/A
ENSG00000236056 ENST00000450472 N/A 0.280±0.00 0.279±0.00 0.019±0.00 0.018±0.00 N/A 0.030±0.00 N/A 0.206±0.00 N/A N/A 0.042±0.00 0.113±0.01 0.064±0.00
ENSG00000248476 ENST00000504298 0.207±0.00 0.239±0.00 0.287±0.00 0.284±0.05 0.680±0.43 0.272±0.23 0.086±0.05 0.530±0.20 0.079±0.00 0.862±0.71 0.657±0.00 0.225±0.19 0.113±0.03 1.076±0.00
ENSG00000273017 ENST00000609910 0.473±0.00 1.196±0.00 N/A 0.143±0.00 0.676±0.09 0.156±0.00 0.143±0.00 0.867±0.00 0.135±0.00 0.073±0.00 0.722±0.00 0.446±0.13 0.223±0.09 0.389±0.01
ENSG00000273464 ENST00000608759 0.185±0.00 0.276±0.00 N/A N/A 0.089±0.00 0.766±0.00 0.084±0.00 0.451±0.00 N/A 0.287±0.00 0.323±0.00 0.251±0.21 0.286±0.04 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022935 ENSMUST00000023652 0.222±0.02 0.005±0.00 0.440±0.00 1.178±0.00 0.017±0.00 0.121±0.07 N/A 0.030±0.02 0.007±0.01 0.048±0.04 N/A 0.093±0.06 0.013±0.00 0.198±0.07
ENSMUST00000072256 N/A 0.046±0.02 N/A 1.878±0.70 N/A 0.041±0.03 N/A N/A N/A 0.005±0.00 N/A 0.044±0.02 N/A N/A
ENSMUST00000114137 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.035±0.00 N/A 0.127±0.07
ENSMUSG00000025612 ENSMUST00000026703 5.605±1.63 5.796±0.50 3.272±0.04 4.971±3.41 6.339±2.03 9.574±0.70 3.256±0.29 4.372±0.37 4.749±0.97 12.324±1.60 5.463±0.55 7.553±1.79 6.991±2.12 0.520±0.15
ENSMUST00000151046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156958 N/A N/A N/A N/A N/A N/A 1.221±0.12 1.719±0.29 1.387±0.12 N/A N/A 8.703±0.00 5.480±1.07 0.493±0.08
ENSMUSG00000055972 ENSMUST00000069809 0.088±0.06 N/A 0.020±0.00 N/A N/A N/A 0.020±0.00 0.039±0.01 0.020±0.01 0.068±0.04 0.051±0.01 0.086±0.03 0.017±0.01 0.142±0.05
ENSMUST00000189929 0.151±0.07 0.064±0.00 N/A 0.152±0.00 0.056±0.04 0.047±0.00 0.045±0.02 N/A 0.014±0.02 0.074±0.02 0.043±0.02 0.052±0.02 0.019±0.01 0.095±0.04

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