C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00032P_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000185739-ENSG00000090447 CGP 9606 16:4189374-4273075
GeneTranscriptPositionBiotype
ENSG00000090447 (TFAP4)
transcription factor AP-4 (activating enhancer binding protein 4) 		ENST00000204517 (TFAP4-001) 4257186-4273075 protein_coding
ENST00000572393 (TFAP4-007) 4261779-4263737 protein_coding
ENST00000573476 (TFAP4-006) 4260455-4272831 nonsense_mediated_decay
ENST00000574639 (TFAP4-005) 4258189-4272894 nonsense_mediated_decay
ENST00000575300 (TFAP4-002) 4260498-4273075 retained_intron
ENST00000575320 (TFAP4-003) 4257187-4267187 retained_intron
ENST00000575672 (TFAP4-004) 4257186-4258798 retained_intron
ENSG00000185739 (SRL)
sarcalumenin 		ENST00000399609 (SRL-001) 4189374-4242080 protein_coding
ENST00000537996 (SRL-004) 4191810-4239743 protein_coding
ENST00000572111 (SRL-002) 4189374-4242075 nonsense_mediated_decay
ENSG00000262468 (RP11-95P2.1)
 ENST00000571970 (RP11-95P2.1-003) 4246374-4251498 lincRNA
ENST00000573042 (RP11-95P2.1-001) 4245825-4253789 lincRNA
ENST00000573268 (RP11-95P2.1-002) 4246566-4253779 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00032P_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022519-ENSMUSG00000005718 CGP 10090 16:4480216-4559720
GeneTranscriptPositionBiotype
ENSMUSG00000005718 (Tfap4)
transcription factor AP4 		ENSMUST00000005862 (Tfap4-201) 4544661-4559720 protein_coding
ENSMUSG00000022519 (Srl)
sarcalumenin 		ENSMUST00000023161 (Srl-001) 4480228-4523075 protein_coding
ENSMUST00000090500 (Srl-002) 4480216-4523075 protein_coding
ENSMUST00000132284 (Srl-003) 4493603-4523063 retained_intron
ENSMUST00000133440 (Srl-004) 4487579-4541816 processed_transcript
ENSMUSG00000083585 (Gm15885)
predicted gene 15885 		ENSMUST00000122114 (Gm15885-001) 4539308-4539695 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00032P_0001ENSG00000090447ENST00000204517ENST00000572393ENST00000573476ENST00000574639ENST00000575300ENST00000575320ENST00000575672ENSG00000185739ENST00000399609ENST00000537996ENST00000572111ENSG00000262468ENST00000571970ENST00000573042ENST00000573268CIL_00032P_0002ENSMUSG00000005718ENSMUST00000005862ENSMUSG00000022519ENSMUST00000023161ENSMUST00000090500ENSMUST00000132284ENSMUST00000133440ENSMUSG00000083585ENSMUST00000122114
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00032P_0001ENSG00000090447ENST00000204517ENST00000572393ENST00000573476ENST00000575300ENST00000575320ENST00000575672ENSG00000185739ENST00000399609ENST00000537996ENST00000572111ENSG00000262468ENST00000571970ENST00000573042ENST00000573268CIL_00032P_0002ENSMUSG00000005718ENSMUST00000005862ENSMUSG00000022519ENSMUST00000023161ENSMUST00000090500ENSMUST00000133440ENSMUSG00000083585ENSMUST00000122114
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000090447 ENST00000204517 3.058±0.00 1.392±0.00 0.086±0.00 0.758±0.00 0.954±0.38 2.972±0.00 0.114±0.03 1.089±0.51 0.492±0.25 0.952±0.33 2.870±0.00 8.765±5.58 3.338±1.15 1.409±0.61
ENST00000572393 6.590±0.00 N/A N/A 1.029±0.00 1.455±0.00 6.255±0.00 N/A 2.248±0.00 1.786±0.00 N/A 8.505±0.00 4.893±3.36 N/A N/A
ENST00000573476 N/A N/A 0.475±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575300 N/A N/A 0.419±0.00 0.645±0.00 N/A 0.886±0.00 0.165±0.00 1.405±0.00 N/A 0.442±0.00 0.876±0.00 0.543±0.00 N/A N/A
ENST00000575320 N/A N/A N/A N/A 0.173±0.00 N/A 0.024±0.00 0.193±0.00 0.109±0.00 N/A N/A N/A N/A 0.199±0.00
ENST00000575672 N/A N/A N/A 0.402±0.00 N/A 0.420±0.00 0.111±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000185739 ENST00000399609 0.592±0.00 0.992±0.00 N/A 0.326±0.21 3.431±3.41 0.691±0.64 73.025±54.35 1.433±0.00 0.103±0.00 0.502±0.21 62.407±31.29 0.480±0.31 0.772±0.11 7.114±0.00
ENST00000537996 N/A N/A N/A N/A 0.362±0.00 N/A N/A N/A N/A 0.834±0.00 N/A N/A N/A N/A
ENST00000572111 N/A N/A 0.080±0.00 0.052±0.00 N/A 0.185±0.00 3.112±0.00 N/A 0.331±0.00 N/A 5.698±0.00 N/A N/A N/A
ENSG00000262468 ENST00000571970 0.176±0.00 N/A 0.181±0.00 N/A 0.796±0.00 N/A N/A 0.322±0.00 N/A N/A N/A 0.487±0.00 0.160±0.07 0.967±0.00
ENST00000573042 N/A 0.644±0.00 N/A 0.102±0.03 N/A 0.113±0.00 N/A 0.579±0.00 0.470±0.00 0.272±0.00 0.482±0.00 0.237±0.10 0.158±0.02 0.598±0.09
ENST00000573268 N/A 1.172±0.00 N/A 0.489±0.00 0.288±0.00 N/A N/A 0.087±0.00 N/A N/A 0.865±0.00 0.223±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005718 ENSMUST00000005862 3.906±2.24 0.708±0.17 2.865±0.17 3.705±2.24 2.767±1.15 5.504±0.80 0.575±0.14 1.851±0.20 3.447±3.03 2.229±0.27 1.555±0.48 4.683±1.56 1.390±1.09 0.422±0.22
ENSMUSG00000022519 ENSMUST00000023161 N/A N/A N/A 0.077±0.00 7.224±0.67 0.132±0.00 17.522±3.09 0.540±0.24 0.047±0.02 1.381±0.07 128.959±6.70 0.230±0.00 N/A 0.049±0.00
ENSMUST00000090500 N/A 0.595±0.18 2.981±0.25 3.041±0.12 8.151±8.73 0.640±0.08 34.614±6.88 1.182±0.16 0.342±0.20 1.257±0.40 147.364±49.50 1.861±0.40 0.357±0.04 0.536±0.18
ENSMUST00000132284 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133440 N/A N/A N/A N/A N/A 0.845±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000083585 ENSMUST00000122114 N/A N/A N/A N/A 0.290±0.08 N/A N/A N/A 0.158±0.04 0.188±0.00 N/A 0.432±0.26 0.115±0.03 N/A

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