C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00036G_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000087589-ENSG00000022277 CGP 9606 20:56412112-56519449
GeneTranscriptPositionBiotype
ENSG00000022277 (RTFDC1)
replication termination factor 2 domain containing 1 		ENST00000023939 (RTFDC1-201) 56468585-56518886 protein_coding
ENST00000357348 (RTFDC1-001) 56468591-56519449 protein_coding
ENST00000395881 (RTFDC1-004) 56468614-56518887 protein_coding
ENST00000449062 (RTFDC1-006) 56468678-56517201 protein_coding
ENST00000466260 (RTFDC1-007) 56468686-56477032 processed_transcript
ENST00000477485 (RTFDC1-008) 56513391-56518245 retained_intron
ENST00000477573 (RTFDC1-003) 56515694-56518887 retained_intron
ENST00000484084 (RTFDC1-005) 56468658-56473360 processed_transcript
ENST00000487211 (RTFDC1-002) 56468679-56474759 processed_transcript
ENSG00000087589 (CASS4)
Cas scaffolding protein family member 4 		ENST00000360314 (CASS4-001) 56412112-56458780 protein_coding
ENST00000434344 (CASS4-002) 56412261-56460387 protein_coding
ENST00000497244 (CASS4-003) 56412308-56453896 retained_intron
ENSG00000228601 (RPL39P)
ribosomal protein L39 pseudogene 		ENST00000450188 (RPL39P-001) 56459428-56459583 processed_pseudogene
CIL_00036G_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000074570-ENSMUSG00000027502 CGP 10090 2:172393794-172469908
GeneTranscriptPositionBiotype
ENSMUSG00000027502 (Rtfdc1)
replication termination factor 2 domain containing 1 		ENSMUST00000029005 (Rtfdc1-001) 172440556-172469908 protein_coding
ENSMUST00000109132 (Rtfdc1-003) 172440602-172466654 retained_intron
ENSMUST00000140048 (Rtfdc1-002) 172452977-172469908 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00036G_0001ENSG00000022277ENST00000023939ENST00000357348ENST00000395881ENST00000449062ENST00000466260ENST00000477485ENST00000477573ENST00000484084ENST00000487211ENSG00000087589ENST00000360314ENST00000434344ENST00000497244ENSG00000228601ENST00000450188CIL_00036G_0002ENSMUSG00000027502ENSMUST00000029005ENSMUST00000109132ENSMUST00000140048
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00036G_0001ENSG00000022277ENST00000023939ENST00000357348ENST00000395881ENST00000449062ENSG00000087589ENST00000360314ENST00000434344ENST00000497244ENSG00000228601ENST00000450188CIL_00036G_0002ENSMUSG00000027502ENSMUST00000029005ENSMUST00000109132ENSMUST00000140048
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000022277 ENST00000023939 N/A 8.368±0.00 N/A N/A 9.077±0.00 6.743±0.00 12.260±0.00 12.478±10.60 12.523±0.00 19.836±0.00 18.847±0.00 29.347±1.09 29.903±2.79 10.218±0.00
ENST00000357348 N/A N/A 0.589±0.00 6.312±0.00 2.406±0.00 N/A 1.388±0.00 N/A 2.954±0.00 1.881±0.00 3.366±0.00 2.262±0.00 N/A N/A
ENST00000395881 36.384±0.00 38.710±0.00 2.933±0.00 32.224±23.22 20.612±16.15 25.279±17.08 10.682±6.65 16.507±10.33 10.580±3.65 12.102±7.47 19.420±15.59 30.180±13.95 34.235±9.73 39.058±4.80
ENST00000449062 22.324±0.00 15.736±0.00 2.460±0.00 21.886±14.17 9.918±2.49 11.851±6.55 2.457±0.00 7.116±0.00 6.527±0.00 4.627±0.00 N/A 17.964±8.10 30.568±0.00 14.712±0.00
ENST00000466260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477485 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000087589 ENST00000360314 N/A N/A 0.142±0.00 N/A 0.147±0.00 0.048±0.00 0.084±0.00 N/A N/A N/A 0.013±0.00 0.067±0.01 0.358±0.00 N/A
ENST00000434344 N/A 0.380±0.00 N/A 0.178±0.00 0.169±0.00 0.156±0.00 0.045±0.00 0.141±0.01 0.130±0.03 N/A N/A 0.203±0.06 0.578±0.00 0.048±0.00
ENST00000497244 N/A N/A N/A N/A N/A N/A N/A 0.135±0.00 N/A N/A N/A N/A N/A 0.038±0.00
ENSG00000228601 ENST00000450188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.094±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027502 ENSMUST00000029005 38.896±9.78 20.871±2.48 32.199±3.08 20.162±6.76 33.322±4.47 19.649±1.72 10.670±0.70 19.469±0.52 20.532±2.39 26.465±0.94 17.738±1.04 24.496±5.49 30.924±11.87 11.855±0.45
ENSMUST00000109132 N/A N/A N/A 109.184±0.00 N/A N/A N/A N/A N/A N/A N/A 142.885±0.00 103.596±95.37 97.614±0.00
ENSMUST00000140048 N/A 2.148±0.00 N/A N/A N/A 2.898±0.00 N/A N/A N/A N/A N/A 2.843±0.00 N/A N/A

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