C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00038F_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000124588-ENSG00000137275 CGP 9606 6:2987987-3115187
GeneTranscriptPositionBiotype
ENSG00000137275 (RIPK1)
receptor (TNFRSF)-interacting serine-threonine kinase 1 		ENST00000259808 (RIPK1-005) 3068424-3115185 protein_coding
ENST00000380409 (RIPK1-201) 3076824-3115187 protein_coding
ENST00000479389 (RIPK1-004) 3063991-3106051 processed_transcript
ENSG00000217707 (SERPINB8P1)
serpin peptidase inhibitor, clade B8 (ovalbumin) pseudogene 1 		ENST00000401898 (SERPINB8P1-001) 3048835-3049211 unprocessed_pseudogene
ENSG00000222248 (RNA5SP201)
RNA, 5S ribosomal pseudogene 201 		ENST00000410316 (RNA5SP201-201) 3088686-3088809 rRNA
ENSG00000229282 (RP1-40E16.2)
 ENST00000433761 (RP1-40E16.2-001) 3055890-3056761 lincRNA
ENSG00000232654 (FAM136BP)
family with sequence similarity 136, member B, pseudogene 		ENST00000428729 (FAM136BP-001) 3045384-3045800 processed_pseudogene
ENSG00000271361 (HTATSF1P2)
HIV-1 Tat specific factor 1 pseudogene 2 		ENST00000604204 (HTATSF1P2-001) 3023142-3023772 processed_pseudogene
ENSG00000274855 (RP1-90J20.14)
 ENST00000612789 (RP1-90J20.14-001) 3033183-3033288 processed_pseudogene
CIL_00038F_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000046949-ENSMUSG00000021408 CGP 10090 13:33964659-34035170
GeneTranscriptPositionBiotype
ENSMUSG00000021408 (Ripk1)
receptor (TNFRSF)-interacting serine-threonine kinase 1 		ENSMUST00000021844 (Ripk1-001) 34002363-34033677 protein_coding
ENSMUST00000163418 (Ripk1-003) 34002400-34014686 retained_intron
ENSMUST00000167374 (Ripk1-002) 34002874-34035170 protein_coding
ENSMUST00000171137 (Ripk1-004) 34009698-34032782 protein_coding
ENSMUSG00000046949 (Nqo2)
NAD(P)H dehydrogenase, quinone 2 		ENSMUST00000021843 (Nqo2-201) 33964659-33988465 protein_coding
ENSMUST00000058978 (Nqo2-202) 33964659-33988465 protein_coding
ENSMUSG00000060147 (Serpinb6a)
serine (or cysteine) peptidase inhibitor, clade B, member 6a 		ENSMUST00000017188 (Serpinb6a-002) 33917927-33935996 protein_coding
ENSMUST00000043552 (Serpinb6a-001) 33917918-33936198 protein_coding
ENSMUST00000076532 (Serpinb6a-201) 33917918-34002794 protein_coding
ENSMUST00000164627 (Serpinb6a-014) 33925314-33935977 protein_coding
ENSMUST00000166354 (Serpinb6a-005) 33930138-34002786 protein_coding
ENSMUST00000167163 (Serpinb6a-202) 33917918-33936083 protein_coding
ENSMUST00000167237 (Serpinb6a-006) 33931583-34002740 protein_coding
ENSMUST00000167260 (Serpinb6a-010) 33922926-33935875 protein_coding
ENSMUST00000167597 (Serpinb6a-004) 33971081-34002767 processed_transcript
ENSMUST00000168350 (Serpinb6a-013) 33923019-33935848 protein_coding
ENSMUST00000168400 (Serpinb6a-003) 33925386-34002767 protein_coding
ENSMUST00000170620 (Serpinb6a-008) 33986488-34002770 processed_transcript
ENSMUST00000170991 (Serpinb6a-012) 33930125-33935954 protein_coding
ENSMUST00000171034 (Serpinb6a-007) 33918790-34002794 protein_coding
ENSMUST00000171252 (Serpinb6a-011) 33922942-33935955 protein_coding
ENSMUST00000171951 (Serpinb6a-015) 33918232-33922059 processed_transcript
ENSMUST00000171985 (Serpinb6a-009) 33923624-33935978 retained_intron
ENSMUSG00000090628 (Gm17083)
predicted gene 17083 		ENSMUST00000165849 (Gm17083-001) 34006966-34008331 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00038F_0001ENSG00000137275ENST00000259808ENST00000380409ENST00000479389ENSG00000217707ENST00000401898ENSG00000222248ENST00000410316ENSG00000229282ENST00000433761ENSG00000232654ENST00000428729ENSG00000271361ENST00000604204ENSG00000274855ENST00000612789CIL_00038F_0002ENSMUSG00000021408ENSMUST00000021844ENSMUST00000163418ENSMUST00000167374ENSMUST00000171137ENSMUSG00000046949ENSMUST00000021843ENSMUST00000058978ENSMUSG00000060147ENSMUST00000017188ENSMUST00000043552ENSMUST00000076532ENSMUST00000164627ENSMUST00000166354ENSMUST00000167163ENSMUST00000167237ENSMUST00000167260ENSMUST00000167597ENSMUST00000168350ENSMUST00000168400ENSMUST00000170620ENSMUST00000170991ENSMUST00000171034ENSMUST00000171252ENSMUST00000171951ENSMUST00000171985ENSMUSG00000090628ENSMUST00000165849
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00038F_0001ENSG00000137275ENST00000259808ENST00000380409ENSG00000217707ENST00000401898ENSG00000222248ENST00000410316ENSG00000229282ENST00000433761ENSG00000232654ENST00000428729ENSG00000271361ENST00000604204ENSG00000274855ENST00000612789CIL_00038F_0002ENSMUSG00000021408ENSMUST00000021844ENSMUST00000163418ENSMUST00000167374ENSMUSG00000046949ENSMUST00000021843ENSMUST00000058978ENSMUSG00000060147ENSMUST00000017188ENSMUST00000043552ENSMUST00000076532ENSMUST00000167163ENSMUST00000171951ENSMUSG00000090628ENSMUST00000165849
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000137275 ENST00000259808 9.222±0.00 7.025±0.00 2.134±0.00 0.915±0.66 4.082±0.96 4.109±0.02 1.333±0.59 5.120±1.78 2.915±0.11 1.954±0.89 0.178±0.00 4.566±2.31 3.126±0.45 2.456±0.92
ENST00000380409 N/A 6.898±0.00 N/A N/A 2.097±1.36 N/A 1.319±0.00 2.597±0.00 1.295±0.00 1.718±0.93 3.146±0.00 5.180±1.90 6.872±1.74 2.224±0.17
ENST00000479389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000217707 ENST00000401898 N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000222248 ENST00000410316 N/A N/A N/A N/A 0.164±0.00 N/A 0.290±0.00 0.159±0.00 11.925±0.00 N/A N/A 1.023±0.00 N/A N/A
ENSG00000229282 ENST00000433761 0.152±0.00 0.418±0.00 N/A 0.231±0.00 0.272±0.00 0.243±0.00 0.048±0.00 0.106±0.00 0.047±0.00 0.340±0.00 0.229±0.00 0.076±0.00 N/A 1.012±0.11
ENSG00000232654 ENST00000428729 0.602±0.00 N/A N/A 0.511±0.00 N/A 0.636±0.00 0.167±0.00 0.387±0.00 0.509±0.00 N/A N/A 0.597±0.00 N/A N/A
ENSG00000271361 ENST00000604204 N/A N/A N/A N/A N/A 1.023±0.00 N/A N/A N/A 1.892±0.00 N/A N/A N/A N/A
ENSG00000274855 ENST00000612789 N/A N/A N/A 0.256±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021408 ENSMUST00000021844 5.349±0.21 N/A N/A N/A 7.027±0.00 9.329±2.33 N/A 4.094±0.75 3.819±0.79 7.351±0.14 N/A 6.196±0.00 9.550±4.77 N/A
ENSMUST00000163418 N/A 24.139±5.50 N/A N/A 16.933±0.00 17.522±3.75 N/A N/A N/A 13.521±1.97 N/A 16.395±3.25 N/A N/A
ENSMUST00000167374 4.550±0.31 N/A N/A 1.376±0.24 5.676±0.08 N/A N/A 2.969±0.32 2.653±0.14 N/A N/A 6.482±2.18 3.666±0.00 N/A
ENSMUST00000171137 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000046949 ENSMUST00000021843 N/A N/A N/A N/A N/A N/A 3.365±0.21 N/A 7.095±1.18 N/A N/A N/A N/A N/A
ENSMUST00000058978 6.944±0.74 11.207±0.00 10.139±0.38 1.566±0.24 9.391±1.21 N/A 5.517±0.39 8.343±0.85 15.732±9.38 11.034±3.07 N/A 9.955±2.05 10.106±0.56 7.230±0.63
ENSMUSG00000060147 ENSMUST00000017188 N/A 30.286±5.30 N/A N/A N/A N/A N/A N/A N/A N/A 49.900±19.02 17.915±2.50 N/A N/A
ENSMUST00000043552 40.231±3.50 31.877±8.26 98.770±6.03 3.790±0.77 37.937±11.87 89.230±12.43 23.400±1.74 12.028±1.57 12.301±2.21 56.920±22.47 60.600±10.17 33.556±18.10 49.654±38.26 N/A
ENSMUST00000076532 N/A 28.624±0.00 N/A 5.108±0.47 N/A N/A N/A N/A N/A 17.237±0.00 N/A 22.722±1.57 N/A 32.060±7.11
ENSMUST00000164627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.107±6.80 N/A N/A N/A
ENSMUST00000167237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168350 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170991 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171951 N/A N/A N/A 106.414±0.00 N/A N/A N/A N/A N/A N/A N/A 1570.990±0.00 397.833±37.85 566.161±0.00
ENSMUST00000171985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090628 ENSMUST00000165849 0.246±0.09 0.356±0.24 0.045±0.01 0.102±0.02 0.222±0.09 0.238±0.13 0.068±0.04 0.189±0.07 0.153±0.07 0.295±0.05 0.022±0.01 0.275±0.16 0.071±0.05 0.292±0.13

Loading