C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00038T_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000179299-ENSG00000163697 CGP 9606 4:40749897-41216714
GeneTranscriptPositionBiotype
ENSG00000163697 (APBB2)
amyloid beta (A4) precursor protein-binding, family B, member 2 		ENST00000295974 (APBB2-002) 40810027-41214618 protein_coding
ENST00000502682 (APBB2-009) 41065669-41216714 processed_transcript
ENST00000502687 (APBB2-031) 40815973-40822466 retained_intron
ENST00000502841 (APBB2-007) 40815333-40857155 protein_coding
ENST00000503264 (APBB2-019) 41014288-41214518 protein_coding
ENST00000503503 (APBB2-016) 41014388-41214485 protein_coding
ENST00000503555 (APBB2-011) 41065590-41207908 processed_transcript
ENST00000504305 (APBB2-025) 40815746-40857155 protein_coding
ENST00000504484 (APBB2-008) 40892395-40935626 retained_intron
ENST00000505266 (APBB2-013) 41193793-41214497 processed_transcript
ENST00000506352 (APBB2-012) 40815617-41214615 protein_coding
ENST00000506999 (APBB2-015) 41033290-41214569 processed_transcript
ENST00000507831 (APBB2-024) 40823666-40890914 processed_transcript
ENST00000508593 (APBB2-003) 40815324-41214532 protein_coding
ENST00000508676 (APBB2-010) 41014336-41214608 protein_coding
ENST00000508707 (APBB2-018) 41014213-41214520 protein_coding
ENST00000509446 (APBB2-020) 41013947-41214493 protein_coding
ENST00000509475 (APBB2-004) 40890309-41014385 retained_intron
ENST00000510670 (APBB2-026) 40822030-40857192 protein_coding
ENST00000510925 (APBB2-030) 40816085-40830515 nonsense_mediated_decay
ENST00000511120 (APBB2-022) 40893363-40935440 retained_intron
ENST00000511572 (APBB2-017) 41065605-41214569 processed_transcript
ENST00000512510 (APBB2-029) 40821983-40890425 protein_coding
ENST00000513140 (APBB2-001) 40814607-41214458 protein_coding
ENST00000513493 (APBB2-023) 40825887-40893272 protein_coding
ENST00000513516 (APBB2-027) 40823668-40857177 protein_coding
ENST00000513611 (APBB2-006) 40815313-41014385 protein_coding
ENST00000514094 (APBB2-021) 40826786-40934487 retained_intron
ENST00000514920 (APBB2-028) 40823644-40842516 protein_coding
ENST00000543538 (APBB2-201) 40810028-40857155 protein_coding
ENSG00000179299 (NSUN7)
NOP2/Sun domain family, member 7 		ENST00000316607 (NSUN7-002) 40749925-40809985 protein_coding
ENST00000381782 (NSUN7-001) 40749897-40809985 protein_coding
ENST00000423784 (NSUN7-006) 40776075-40808503 processed_transcript
ENST00000463952 (NSUN7-004) 40762606-40776188 processed_transcript
ENST00000469033 (NSUN7-005) 40774265-40776476 retained_intron
ENST00000473399 (NSUN7-003) 40749964-40775456 retained_intron
ENST00000478857 (NSUN7-007) 40798874-40808543 processed_transcript
ENSG00000199790 (RNU6-836P)
RNA, U6 small nuclear 836, pseudogene 		ENST00000362920 (RNU6-836P-201) 41084607-41084713 snRNA
ENSG00000201736 (RNA5SP160)
RNA, 5S ribosomal pseudogene 160 		ENST00000364866 (RNA5SP160-201) 40990154-40990273 rRNA
ENSG00000207195 (Y_RNA)
Y RNA 		ENST00000384466 (Y_RNA.1-702) 40826655-40826765 misc_RNA
ENSG00000248780 (RP11-632F7.1)
 ENST00000507378 (RP11-632F7.1-001) 40786110-40786710 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

Genome
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Structures from Ensembl
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Structures from Ensembl
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CIL_00038T_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029206-ENSMUSG00000029207 CGP 10090 5:66259912-66618828
GeneTranscriptPositionBiotype
ENSMUSG00000029206 (Nsun7)
NOL1/NOP2/Sun domain family, member 7 		ENSMUST00000031109 (Nsun7-201) 66260125-66298016 protein_coding
ENSMUST00000065530 (Nsun7-001) 66259912-66297062 protein_coding
ENSMUST00000113720 (Nsun7-003) 66260312-66298016 protein_coding
ENSMUST00000127901 (Nsun7-004) 66260018-66266071 retained_intron
ENSMUST00000131585 (Nsun7-002) 66261159-66298016 protein_coding
ENSMUSG00000084544 (Gm23183)
predicted gene, 23183 		ENSMUST00000122595 (Gm23183-201) 66325740-66326062 misc_RNA
ENSMUSG00000089962 (Gm16273)
predicted gene 16273 		ENSMUST00000159409 (Gm16273-001) 66356918-66357185 unprocessed_pseudogene

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00038T_0001ENSG00000163697ENST00000295974ENST00000506352ENST00000508593ENST00000508707ENST00000509446ENST00000509475ENST00000513611ENST00000543538ENSG00000179299ENST00000316607ENST00000381782ENST00000423784ENST00000473399ENST00000478857ENSG00000199790ENST00000362920ENSG00000201736ENST00000364866ENSG00000207195ENST00000384466ENSG00000248780ENST00000507378CIL_00038T_0002ENSMUSG00000029206ENSMUST00000031109ENSMUST00000065530ENSMUST00000113720ENSMUST00000127901ENSMUST00000131585ENSMUSG00000084544ENSMUST00000122595ENSMUSG00000089962ENSMUST00000159409
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163697 ENST00000295974 1.824±0.00 0.733±0.00 2.094±0.00 2.886±0.31 2.884±1.85 2.567±0.88 0.714±0.02 2.885±0.00 2.584±0.00 3.165±0.00 0.463±0.00 3.223±2.83 0.964±0.44 4.272±0.00
ENST00000502682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000502687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000502841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504305 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506352 N/A N/A 4.813±0.00 N/A 1.668±0.00 N/A 0.782±0.00 N/A N/A 2.594±0.00 0.872±0.00 N/A N/A N/A
ENST00000506999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508593 N/A N/A N/A 3.941±0.00 2.552±0.00 3.308±0.00 1.439±0.24 2.108±0.00 6.198±0.00 4.141±0.00 N/A 3.444±2.79 2.366±0.44 N/A
ENST00000508676 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508707 N/A N/A 17.401±0.00 N/A N/A N/A 8.356±0.00 N/A 17.863±0.00 N/A 4.205±0.00 N/A N/A N/A
ENST00000509446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.325±0.00 N/A N/A N/A
ENST00000509475 N/A N/A N/A 6.538±0.00 N/A N/A N/A 3.852±0.00 N/A N/A N/A N/A N/A N/A
ENST00000510670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511572 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512510 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513140 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513493 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513611 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.182±0.00 1.114±0.13 N/A 2.714±1.15 2.115±0.00
ENST00000514094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514920 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543538 N/A N/A N/A N/A N/A N/A N/A 1.705±0.00 0.721±0.00 N/A N/A N/A N/A N/A
ENSG00000179299 ENST00000316607 N/A N/A N/A 0.038±0.00 0.220±0.00 0.308±0.00 0.094±0.00 N/A N/A 0.655±0.12 N/A 0.867±0.00 0.154±0.00 N/A
ENST00000381782 0.284±0.00 N/A N/A 0.052±0.00 0.212±0.00 N/A N/A 1.711±0.00 N/A 0.934±0.04 N/A 0.732±0.34 N/A 8.748±0.00
ENST00000423784 N/A N/A N/A 0.164±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473399 N/A N/A 1.001±0.00 N/A 0.277±0.00 N/A N/A N/A N/A 0.910±0.00 N/A N/A N/A N/A
ENST00000478857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.233±0.00 N/A N/A N/A
ENSG00000199790 ENST00000362920 N/A N/A N/A N/A 0.330±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201736 ENST00000364866 N/A N/A N/A N/A 0.541±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000207195 ENST00000384466 N/A 1.226±0.00 N/A 0.425±0.00 0.623±0.00 1.325±0.00 0.538±0.00 N/A N/A N/A N/A 1.700±0.00 N/A 0.367±0.00
ENSG00000248780 ENST00000507378 N/A N/A N/A N/A 0.154±0.14 0.075±0.06 N/A 0.284±0.00 N/A 0.192±0.14 N/A 0.390±0.29 0.166±0.10 0.162±0.06
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029206 ENSMUST00000031109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.411±0.48
ENSMUST00000065530 0.215±0.19 0.126±0.06 0.143±0.04 1.026±0.04 0.147±0.06 0.055±0.03 0.032±0.01 0.132±0.03 0.030±0.01 0.453±0.00 0.018±0.00 0.112±0.05 0.055±0.05 5.858±2.87
ENSMUST00000113720 0.020±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.359±1.42
ENSMUST00000127901 0.185±0.19 0.113±0.00 0.036±0.00 0.412±0.17 0.069±0.01 0.055±0.01 0.046±0.01 0.069±0.05 0.042±0.02 0.567±0.09 0.018±0.00 0.165±0.10 0.040±0.03 N/A
ENSMUST00000131585 N/A N/A 0.063±0.00 0.329±0.05 0.093±0.00 N/A 0.018±0.00 0.052±0.00 0.060±0.04 N/A 0.021±0.01 N/A 0.033±0.01 3.670±0.00
ENSMUSG00000084544 ENSMUST00000122595 0.709±0.45 0.619±0.28 0.485±0.05 0.788±0.65 0.478±0.00 0.574±0.18 0.801±0.08 0.499±0.55 0.129±0.06 0.711±0.65 N/A 1.023±0.56 0.590±0.26 0.549±0.37
ENSMUSG00000089962 ENSMUST00000159409 N/A N/A 0.466±0.00 0.092±0.01 N/A N/A 0.402±0.00 N/A N/A 0.617±0.00 N/A N/A 0.280±0.22 N/A

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