C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00038V_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000170423-ENSG00000170421 CGP 9606 12:52837804-52949954
GeneTranscriptPositionBiotype
ENSG00000111057 (KRT18)
keratin 18 		ENST00000388835 (KRT18-002) 52948964-52952901 protein_coding
ENST00000388837 (KRT18-201) 52948871-52952900 protein_coding
ENST00000546656 (KRT18-005) 52951496-52952278 retained_intron
ENST00000548015 (KRT18-004) 52949805-52951645 retained_intron
ENST00000548496 (KRT18-006) 52951742-52952815 retained_intron
ENST00000549078 (KRT18-003) 52949127-52952872 retained_intron
ENST00000550600 (KRT18-001) 52948886-52952812 protein_coding
ENSG00000170421 (KRT8)
keratin 8 		ENST00000293308 (KRT8-002) 52897194-52905072 protein_coding
ENST00000546542 (KRT8-015) 52904676-52907060 protein_coding
ENST00000546583 (KRT8-005) 52897208-52905052 retained_intron
ENST00000546826 (KRT8-013) 52899935-52949882 protein_coding
ENST00000546897 (KRT8-003) 52897281-52949824 protein_coding
ENST00000546900 (KRT8-017) 52900588-52903648 protein_coding
ENST00000546921 (KRT8-009) 52949216-52949954 retained_intron
ENST00000547031 (KRT8-020) 52898469-52901867 retained_intron
ENST00000547176 (KRT8-019) 52899996-52901947 nonsense_mediated_decay
ENST00000547413 (KRT8-016) 52901864-52906618 protein_coding
ENST00000548998 (KRT8-014) 52900008-52949776 protein_coding
ENST00000549176 (KRT8-018) 52899794-52902204 retained_intron
ENST00000549198 (KRT8-012) 52948484-52949831 processed_transcript
ENST00000550170 (KRT8-008) 52897216-52905044 retained_intron
ENST00000551318 (KRT8-010) 52948651-52949920 processed_transcript
ENST00000552150 (KRT8-004) 52897297-52926469 protein_coding
ENST00000552551 (KRT8-001) 52897187-52949842 protein_coding
ENST00000552877 (KRT8-011) 52948650-52949874 processed_transcript
ENSG00000170423 (KRT78)
keratin 78 		ENST00000304620 (KRT78-001) 52838962-52848994 protein_coding
ENST00000359499 (KRT78-002) 52837804-52848283 protein_coding
ENST00000547110 (KRT78-003) 52844604-52849092 protein_coding
ENST00000547920 (KRT78-005) 52838966-52839814 protein_coding
ENST00000551581 (KRT78-004) 52845996-52847953 retained_intron
ENSG00000241146 (RPL7P41)
ribosomal protein L7 pseudogene 41 		ENST00000485823 (RPL7P41-001) 52885429-52886385 processed_pseudogene
ENSG00000278185 (RP11-153F5.7)
 ENST00000619952 (RP11-153F5.7-001) 52946614-52947125 sense_intronic

Homo sapiens Ensembl (GRCh38)

Genome
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Structures from Ensembl
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Structures from Ensembl
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CIL_00038V_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000050463-ENSMUSG00000049382 CGP 10090 15:101946004-102004342
GeneTranscriptPositionBiotype
ENSMUSG00000049382 (Krt8)
keratin 8 		ENSMUST00000023952 (Krt8-201) 101996711-102004342 protein_coding
ENSMUSG00000050463 (Krt78)
keratin 78 		ENSMUST00000164932 (Krt78-201) 101946004-101954287 protein_coding

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00038V_0001ENSG00000111057ENST00000388835ENST00000388837ENST00000546656ENST00000548015ENST00000548496ENST00000549078ENST00000550600ENSG00000170421ENST00000293308ENST00000546542ENST00000546583ENST00000546826ENST00000546897ENST00000546900ENST00000546921ENST00000547031ENST00000547176ENST00000547413ENST00000548998ENST00000549176ENST00000549198ENST00000550170ENST00000551318ENST00000552150ENST00000552551ENST00000552877ENSG00000170423ENST00000304620ENST00000359499ENST00000547110ENST00000547920ENST00000551581ENSG00000241146ENST00000485823ENSG00000278185ENST00000619952CIL_00038V_0002ENSMUSG00000049382ENSMUST00000023952ENSMUSG00000050463ENSMUST00000164932
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00038V_0001ENSG00000111057ENST00000388835ENST00000388837ENST00000546656ENSG00000170421ENST00000293308ENST00000546826ENST00000546900ENST00000548998ENST00000549176ENST00000549198ENST00000552150ENSG00000170423ENST00000304620ENST00000359499ENST00000547110ENST00000547920ENST00000551581ENSG00000241146ENST00000485823ENSG00000278185ENST00000619952CIL_00038V_0002ENSMUSG00000049382ENSMUST00000023952ENSMUSG00000050463ENSMUST00000164932
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000111057 ENST00000388835 7.190±0.00 4.135±0.00 2.929±0.00 N/A 25.047±0.00 32.800±4.94 N/A 42.380±0.00 82.351±74.60 99.876±95.47 0.785±0.00 188.216±210.92 772.871±0.00 9.241±2.32
ENST00000388837 N/A 3.621±0.00 9.546±0.00 0.640±0.51 34.365±10.55 45.842±10.70 0.953±0.00 61.556±24.06 11.338±0.00 10.708±0.00 0.654±0.36 63.883±59.75 785.368±228.96 13.904±0.00
ENST00000546656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.750±0.00 N/A N/A N/A
ENST00000548015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548496 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170421 ENST00000293308 3.558±0.00 3.499±0.00 4.980±0.00 0.718±0.00 30.611±4.78 101.049±3.01 14.389±12.28 91.705±60.36 68.175±52.79 71.890±64.23 0.344±0.00 164.761±137.34 1056.576±517.25 13.333±7.04
ENST00000546542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546826 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.969±0.00 N/A N/A N/A N/A
ENST00000546897 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546900 N/A N/A N/A 0.117±0.00 N/A N/A N/A N/A N/A N/A 0.651±0.00 N/A N/A N/A
ENST00000546921 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.038±0.00 N/A N/A N/A
ENST00000549176 N/A N/A 6.787±0.00 N/A 56.232±0.00 91.758±0.00 3.350±0.00 N/A 19.272±0.00 N/A N/A 82.508±0.00 443.267±0.00 N/A
ENST00000549198 N/A N/A N/A 1.122±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552150 N/A N/A N/A N/A 31.354±0.00 56.305±0.00 N/A N/A N/A N/A N/A 384.602±347.16 923.425±0.00 3.695±0.00
ENST00000552551 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170423 ENST00000304620 0.109±0.00 0.014±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.158±5.41 0.290±0.06 0.339±0.20
ENST00000359499 N/A N/A N/A N/A N/A N/A N/A 0.048±0.00 N/A N/A N/A 2.220±0.00 N/A N/A
ENST00000547110 N/A N/A N/A N/A N/A N/A N/A 0.104±0.00 N/A 0.047±0.00 N/A 1.815±0.00 N/A 0.377±0.00
ENST00000547920 0.104±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.319±0.00
ENST00000551581 0.249±0.00 N/A N/A 0.078±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.182±0.00
ENSG00000241146 ENST00000485823 0.012±0.00 0.336±0.00 N/A 0.272±0.00 0.152±0.00 0.059±0.00 0.071±0.00 0.077±0.00 0.011±0.00 0.094±0.00 0.011±0.00 0.039±0.00 N/A 0.044±0.00
ENSG00000278185 ENST00000619952 0.035±0.00 N/A N/A N/A 0.079±0.00 0.176±0.00 N/A 0.925±0.00 0.138±0.00 0.056±0.00 N/A 0.594±0.07 0.208±0.05 0.279±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000049382 ENSMUST00000023952 43.860±42.61 0.558±0.21 200.505±24.14 1.094±0.21 114.781±43.04 1948.045±184.28 3.173±2.18 44.274±2.61 66.349±18.50 78.423±13.41 0.084±0.04 82.844±14.14 1730.198±1224.75 7.649±3.33
ENSMUSG00000050463 ENSMUST00000164932 0.035±0.02 0.024±0.00 0.485±0.13 0.013±0.00 0.371±0.11 0.119±0.05 0.012±0.00 0.018±0.01 0.005±0.00 9.172±9.28 0.038±0.02 0.083±0.04 0.313±0.35 0.477±0.23

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