C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00039O_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000114933-ENSG00000023228 CGP 9606 2:205993721-206159603
GeneTranscriptPositionBiotype
ENSG00000023228 (NDUFS1)
NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase) 		ENST00000233190 (NDUFS1-001) 206114817-206159603 protein_coding
ENST00000423725 (NDUFS1-005) 206123819-206159509 protein_coding
ENST00000432169 (NDUFS1-002) 206124101-206159425 protein_coding
ENST00000440274 (NDUFS1-003) 206123956-206159425 protein_coding
ENST00000449699 (NDUFS1-007) 206124101-206159194 protein_coding
ENST00000454195 (NDUFS1-008) 206147782-206159257 protein_coding
ENST00000455934 (NDUFS1-201) 206123111-206159194 protein_coding
ENST00000456284 (NDUFS1-009) 206147646-206159425 nonsense_mediated_decay
ENST00000457011 (NDUFS1-004) 206123945-206159425 protein_coding
ENST00000498520 (NDUFS1-010) 206127560-206132969 retained_intron
ENSG00000114933 (INO80D)
INO80 complex subunit D 		ENST00000403263 (INO80D-001) 205993721-206086182 protein_coding
ENST00000414320 (INO80D-003) 206062906-206086303 protein_coding
ENST00000424117 (INO80D-004) 206009705-206063244 protein_coding
ENSG00000114942 (EEF1B2)
eukaryotic translation elongation factor 1 beta 2 		ENST00000236957 (EEF1B2-001) 206159585-206162928 protein_coding
ENST00000392221 (EEF1B2-201) 206159594-206162927 protein_coding
ENST00000392222 (EEF1B2-003) 206159605-206162928 protein_coding
ENST00000415904 (EEF1B2-005) 206159927-206161467 nonsense_mediated_decay
ENST00000429769 (EEF1B2-007) 206159636-206162801 nonsense_mediated_decay
ENST00000435123 (EEF1B2-009) 206159934-206161454 nonsense_mediated_decay
ENST00000445505 (EEF1B2-004) 206159607-206162077 protein_coding
ENST00000455150 (EEF1B2-010) 206159934-206162839 nonsense_mediated_decay
ENST00000460760 (EEF1B2-008) 206159638-206161190 retained_intron
ENST00000479587 (EEF1B2-006) 206159615-206161117 retained_intron
ENST00000482103 (EEF1B2-002) 206162228-206162928 retained_intron
ENSG00000237041 (AC007679.4)
 ENST00000434035 (AC007679.4-001) 206040432-206040845 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00039O_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040865-ENSMUSG00000025968 CGP 10090 1:62958418-63176833
GeneTranscriptPositionBiotype
ENSMUSG00000025968 (Ndufs1)
NADH dehydrogenase (ubiquinone) Fe-S protein 1 		ENSMUST00000027111 (Ndufs1-001) 63143596-63176822 protein_coding
ENSMUST00000140612 (Ndufs1-002) 63158902-63176667 retained_intron
ENSMUST00000168099 (Ndufs1-006) 63143735-63176732 protein_coding
ENSMUST00000185412 (Ndufs1-008) 63169253-63176793 protein_coding
ENSMUST00000185732 (Ndufs1-010) 63165014-63176666 protein_coding
ENSMUST00000185827 (Ndufs1-005) 63156683-63176669 retained_intron
ENSMUST00000185847 (Ndufs1-011) 63150066-63176663 protein_coding
ENSMUST00000186569 (Ndufs1-004) 63150233-63152842 retained_intron
ENSMUST00000187756 (Ndufs1-012) 63143689-63147391 nonsense_mediated_decay
ENSMUST00000187835 (Ndufs1-013) 63143604-63147723 retained_intron
ENSMUST00000188370 (Ndufs1-007) 63163839-63176690 protein_coding
ENSMUST00000189664 (Ndufs1-009) 63170853-63176833 protein_coding
ENSMUST00000190095 (Ndufs1-003) 63143596-63144961 retained_intron
ENSMUSG00000081429 (Rps27-ps1)
ribosomal protein S27, pseudogene 1 		ENSMUST00000118179 (Rps27-ps1-001) 63073774-63074019 processed_pseudogene
ENSMUSG00000081617 (Rps13-ps7)
ribosomal protein S13, pseudogene 7 		ENSMUST00000122045 (Rps13-ps7-001) 63038214-63038581 processed_pseudogene
ENSMUSG00000101599 (RP23-13C17.6)
predicted gene, 20342 		ENSMUST00000185480 (RP23-13C17.6-001) 63117118-63126837 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00039O_0001ENSG00000023228ENST00000233190ENST00000423725ENST00000432169ENST00000440274ENST00000449699ENST00000454195ENST00000455934ENST00000456284ENST00000457011ENST00000498520ENSG00000114933ENST00000403263ENST00000414320ENST00000424117ENSG00000114942ENST00000236957ENST00000392221ENST00000392222ENST00000415904ENST00000429769ENST00000435123ENST00000445505ENST00000455150ENST00000460760ENST00000479587ENST00000482103ENSG00000237041ENST00000434035CIL_00039O_0002ENSMUSG00000025968ENSMUST00000027111ENSMUST00000140612ENSMUST00000168099ENSMUST00000185412ENSMUST00000185732ENSMUST00000185827ENSMUST00000185847ENSMUST00000186569ENSMUST00000187756ENSMUST00000187835ENSMUST00000188370ENSMUST00000189664ENSMUST00000190095ENSMUSG00000081429ENSMUST00000118179ENSMUSG00000081617ENSMUST00000122045ENSMUSG00000101599ENSMUST00000185480
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00039O_0001ENSG00000023228ENST00000233190ENST00000423725ENST00000432169ENST00000440274ENST00000449699ENSG00000114933ENST00000403263ENSG00000114942ENST00000236957ENST00000392221ENST00000445505ENST00000455150ENSG00000237041ENST00000434035CIL_00039O_0002ENSMUSG00000025968ENSMUST00000027111ENSMUST00000168099ENSMUST00000185827ENSMUSG00000081429ENSMUST00000118179ENSMUSG00000081617ENSMUST00000122045ENSMUSG00000101599ENSMUST00000185480
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000023228 ENST00000233190 3.859±0.00 4.701±0.00 4.454±0.00 8.072±1.40 3.724±1.59 4.804±0.20 14.133±6.61 5.933±1.52 5.573±0.89 2.525±0.00 6.367±2.01 4.204±0.59 N/A 2.702±1.01
ENST00000423725 N/A N/A N/A N/A N/A N/A N/A 13.948±0.00 N/A N/A N/A N/A N/A N/A
ENST00000432169 N/A N/A N/A N/A N/A N/A N/A 29.456±0.00 N/A N/A 22.379±0.00 N/A N/A 18.018±0.00
ENST00000440274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.957±0.00 8.214±0.00
ENST00000449699 16.203±0.00 N/A 18.920±0.00 32.836±5.61 18.158±4.17 25.301±0.00 76.908±15.31 28.008±0.00 25.903±0.00 11.384±0.00 41.273±8.09 23.667±0.00 N/A 7.652±0.00
ENST00000454195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456284 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498520 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000114933 ENST00000403263 0.271±0.00 0.809±0.00 0.999±0.00 1.656±0.57 1.656±1.17 1.347±1.16 0.904±0.15 1.618±0.00 0.111±0.00 1.706±0.56 1.261±0.14 2.528±1.07 0.562±0.24 1.198±0.00
ENST00000414320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000114942 ENST00000236957 N/A 73.819±0.00 N/A N/A 26.011±0.00 N/A N/A N/A N/A N/A N/A 279.631±260.07 256.875±166.06 15.560±0.00
ENST00000392221 94.114±0.00 145.340±0.00 33.368±0.00 79.972±18.04 73.099±0.14 153.265±50.43 N/A 82.920±4.98 109.612±17.57 102.018±30.66 104.663±8.55 120.521±7.68 30.163±0.00 107.477±0.00
ENST00000392222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429769 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445505 N/A N/A N/A N/A N/A N/A N/A N/A N/A 227.643±0.00 N/A N/A N/A N/A
ENST00000455150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 212.811±0.00 90.623±0.00 42.217±0.00
ENST00000460760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000237041 ENST00000434035 N/A 0.111±0.00 N/A N/A 0.329±0.00 N/A 0.742±0.00 1.449±0.00 N/A 0.852±0.00 N/A 1.161±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025968 ENSMUST00000027111 18.057±0.74 N/A 32.347±4.60 23.842±2.13 35.093±14.55 N/A 97.923±12.44 31.345±3.99 27.987±13.68 N/A 84.882±20.87 42.236±4.13 40.486±8.83 9.548±1.24
ENSMUST00000140612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168099 19.494±0.40 N/A N/A 43.345±0.00 22.956±2.78 N/A 73.604±6.81 35.996±3.81 14.189±1.61 N/A 48.105±13.09 N/A N/A 9.723±2.01
ENSMUST00000185412 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185827 N/A N/A N/A 36.196±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.396±0.00
ENSMUST00000185847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187835 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081429 ENSMUST00000118179 0.959±0.30 N/A 0.217±0.00 0.247±0.02 N/A N/A N/A 0.924±0.29 0.703±0.81 0.779±0.00 N/A 0.595±0.21 0.331±0.28 0.536±0.01
ENSMUSG00000081617 ENSMUST00000122045 N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.027±0.00 0.144±0.00
ENSMUSG00000101599 ENSMUST00000185480 1.163±0.34 0.898±0.16 0.874±0.03 0.912±0.40 1.382±0.11 1.505±0.21 0.406±0.04 1.151±0.18 1.068±0.57 1.260±0.08 0.178±0.03 1.725±0.41 0.614±0.33 0.347±0.12

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