C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003AB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196277-ENSG00000071282 CGP 9606 3:6770001-8568125
GeneTranscriptPositionBiotype
ENSG00000071282 (LMCD1)
LIM and cysteine-rich domains 1 		ENST00000157600 (LMCD1-001) 8501707-8568119 protein_coding
ENST00000397386 (LMCD1-201) 8501807-8568125 protein_coding
ENST00000415597 (LMCD1-004) 8501823-8548863 protein_coding
ENST00000426878 (LMCD1-006) 8537183-8550449 protein_coding
ENST00000454244 (LMCD1-002) 8501858-8567621 protein_coding
ENST00000456506 (LMCD1-003) 8501888-8567764 nonsense_mediated_decay
ENST00000470776 (LMCD1-005) 8501825-8537518 retained_intron
ENST00000535732 (LMCD1-202) 8501807-8551272 protein_coding
ENSG00000196277 (GRM7)
glutamate receptor, metabotropic 7 		ENST00000357716 (GRM7-001) 6861115-7741511 protein_coding
ENST00000389335 (GRM7-004) 6861240-7693686 nonsense_mediated_decay
ENST00000389336 (GRM7-003) 6861240-7693686 protein_coding
ENST00000402647 (GRM7-201) 7146446-7693670 protein_coding
ENST00000435689 (GRM7-007) 6862743-7306652 nonsense_mediated_decay
ENST00000440923 (GRM7-002) 6861240-7693686 nonsense_mediated_decay
ENST00000443259 (GRM7-011) 6770001-7146656 nonsense_mediated_decay
ENST00000445087 (GRM7-009) 7403050-7578490 protein_coding
ENST00000448328 (GRM7-012) 6770069-7306609 protein_coding
ENST00000458641 (GRM7-005) 7451781-7636441 processed_transcript
ENST00000461677 (GRM7-008) 7298577-7415164 retained_intron
ENST00000463676 (GRM7-006) 7298683-7682335 retained_intron
ENST00000467425 (GRM7-013) 6861115-7693670 nonsense_mediated_decay
ENST00000471242 (GRM7-010) 7693633-7694463 processed_transcript
ENST00000486284 (GRM7-015) 6861115-7741533 protein_coding
ENSG00000226258 (GRM7-AS3)
GRM7 antisense RNA 3 		ENST00000412629 (GRM7-AS3-003) 6632358-6805449 lincRNA
ENST00000417482 (GRM7-AS3-006) 6731172-6805438 lincRNA
ENST00000424366 (GRM7-AS3-007) 6739538-6805427 lincRNA
ENST00000445675 (GRM7-AS3-001) 6631900-6664906 lincRNA
ENST00000449158 (GRM7-AS3-005) 6721315-6791105 lincRNA
ENST00000452244 (GRM7-AS3-008) 6740367-6742687 lincRNA
ENST00000454410 (GRM7-AS3-009) 6788934-6805409 lincRNA
ENST00000455623 (GRM7-AS3-002) 6631689-6644894 lincRNA
ENST00000458713 (GRM7-AS3-004) 6632536-6664943 lincRNA
ENSG00000227110 (LMCD1-AS1)
LMCD1 antisense RNA 1 (head to head) 		ENST00000420095 (LMCD1-AS1-001) 8221147-8501655 antisense
ENST00000439407 (LMCD1-AS1-004) 8498609-8611924 antisense
ENST00000441861 (LMCD1-AS1-007) 7952805-8016307 antisense
ENST00000446281 (LMCD1-AS1-006) 7954639-8501598 antisense
ENST00000452802 (LMCD1-AS1-002) 8194249-8501646 antisense
ENST00000455811 (LMCD1-AS1-003) 8498485-8501629 antisense
ENST00000458666 (LMCD1-AS1-005) 8609438-8611900 antisense
ENSG00000228351 (AC018832.1)
 ENST00000428171 (AC018832.1-001) 8079322-8112924 lincRNA
ENSG00000231401 (AC023481.1)
 ENST00000435368 (AC023481.1-001) 8364707-8366392 lincRNA
ENSG00000236152 (MRPS36P1)
mitochondrial ribosomal protein S36 pseudogene 1 		ENST00000421291 (MRPS36P1-001) 6773037-6773343 processed_pseudogene
ENSG00000236202 (GRM7-AS1)
GRM7 antisense RNA 1 		ENST00000420230 (GRM7-AS1-001) 7519741-7535284 antisense
ENST00000427273 (GRM7-AS1-002) 7520138-7560333 antisense
ENSG00000237665 (GRM7-AS2)
GRM7 antisense RNA 2 		ENST00000427748 (GRM7-AS2-001) 6892632-6894022 antisense
ENSG00000270207 (RP11-157E16.1)
 ENST00000604028 (RP11-157E16.1-001) 7606890-7607897 antisense
CIL_0003AB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000056755-ENSMUSG00000057604 CGP 10090 6:110645581-112330425
GeneTranscriptPositionBiotype
ENSMUSG00000044574 (5031434C07Rik)
RIKEN cDNA 5031434C07 gene 		ENSMUST00000053559 (5031434C07Rik-201) 112285857-112288837 antisense
ENSMUST00000188014 (5031434C07Rik-001) 112285593-112288836 antisense
ENSMUSG00000056755 (Grm7)
glutamate receptor, metabotropic 7 		ENSMUST00000071076 (Grm7-003) 110645581-111566067 protein_coding
ENSMUST00000172951 (Grm7-001) 110645582-111567230 protein_coding
ENSMUST00000173001 (Grm7-004) 111495715-111499933 protein_coding
ENSMUST00000174018 (Grm7-002) 110645581-111497090 nonsense_mediated_decay
ENSMUST00000174310 (Grm7-005) 111495744-111502284 protein_coding
ENSMUSG00000057604 (Lmcd1)
LIM and cysteine-rich domains 1 		ENSMUST00000032376 (Lmcd1-001) 112273758-112330425 protein_coding
ENSMUSG00000092448 (Gm20387)
predicted gene 20387 		ENSMUST00000173609 (Gm20387-001) 110639753-110645916 processed_transcript
ENSMUSG00000092603 (Gm20386)
predicted gene 20386 		ENSMUST00000174010 (Gm20386-001) 110738350-110738481 processed_pseudogene
ENSMUSG00000100219 (RP24-445L10.1)
RIKEN cDNA 1700054K19 gene 		ENSMUST00000186102 (RP24-445L10.1-001) 112210708-112212519 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003AB_0001ENSG00000071282ENST00000157600ENST00000397386ENST00000415597ENST00000454244ENST00000456506ENST00000470776ENST00000535732ENSG00000196277ENST00000357716ENST00000389335ENST00000389336ENST00000402647ENST00000445087ENST00000448328ENST00000458641ENST00000461677ENST00000463676ENST00000486284ENSG00000226258ENST00000412629ENST00000445675ENST00000449158ENST00000455623ENST00000458713ENSG00000227110ENST00000420095ENST00000439407ENST00000441861ENST00000446281ENST00000452802ENST00000455811ENST00000458666ENSG00000228351ENST00000428171ENSG00000231401ENST00000435368ENSG00000236152ENST00000421291ENSG00000236202ENST00000420230ENST00000427273ENSG00000237665ENST00000427748ENSG00000270207ENST00000604028CIL_0003AB_0002ENSMUSG00000044574ENSMUST00000053559ENSMUST00000188014ENSMUSG00000056755ENSMUST00000071076ENSMUST00000172951ENSMUST00000174018ENSMUSG00000057604ENSMUST00000032376ENSMUSG00000092448ENSMUST00000173609ENSMUSG00000092603ENSMUST00000174010ENSMUSG00000100219ENSMUST00000186102
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000071282 ENST00000157600 47.315±0.00 16.708±0.00 1.039±0.00 2.433±1.75 26.176±22.20 6.704±4.10 10.880±0.00 13.371±0.00 5.650±5.50 45.806±34.89 49.832±25.66 16.509±11.55 25.454±8.13 10.648±7.71
ENST00000397386 N/A N/A 1.260±0.00 N/A N/A N/A N/A N/A 0.925±0.00 N/A N/A N/A N/A N/A
ENST00000415597 N/A N/A N/A 0.848±0.00 N/A N/A N/A 0.868±0.00 0.407±0.00 N/A N/A 4.880±0.00 21.992±0.00 1.748±0.00
ENST00000426878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454244 N/A N/A N/A 0.483±0.00 N/A N/A N/A N/A N/A N/A N/A 7.424±0.00 12.943±0.00 3.225±0.00
ENST00000456506 N/A N/A N/A N/A N/A N/A N/A 0.490±0.00 N/A N/A N/A N/A N/A N/A
ENST00000470776 N/A N/A N/A 1.743±0.00 N/A N/A 1.791±0.00 2.016±0.00 N/A N/A N/A N/A N/A N/A
ENST00000535732 N/A N/A N/A N/A N/A 0.651±0.00 0.601±0.00 N/A N/A 15.712±0.00 N/A 1.191±0.00 N/A N/A
ENSG00000196277 ENST00000357716 0.220±0.00 N/A N/A 1.385±0.46 0.044±0.02 0.069±0.00 N/A N/A 0.003±0.00 0.041±0.02 N/A N/A N/A N/A
ENST00000389335 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.055±0.00 N/A 0.061±0.00 N/A N/A
ENST00000389336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A
ENST00000402647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.152±0.04 N/A 0.144±0.00
ENST00000435689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445087 N/A N/A N/A N/A N/A N/A N/A N/A 0.394±0.00 N/A N/A N/A 0.026±0.00 1.409±0.00
ENST00000448328 N/A N/A N/A N/A N/A N/A N/A N/A 0.557±0.00 N/A N/A 0.984±0.00 N/A N/A
ENST00000458641 N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A N/A N/A 0.021±0.00 N/A
ENST00000461677 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.225±0.00 N/A N/A N/A N/A
ENST00000463676 0.046±0.00 0.037±0.00 N/A 0.438±0.00 0.025±0.00 0.025±0.00 N/A 0.012±0.00 0.017±0.01 0.157±0.13 0.003±0.00 N/A N/A N/A
ENST00000467425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486284 N/A N/A N/A 1.145±0.31 N/A N/A N/A N/A N/A N/A N/A 0.036±0.00 N/A N/A
ENSG00000226258 ENST00000412629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.324±0.30
ENST00000417482 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445675 N/A N/A N/A N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A N/A
ENST00000449158 N/A N/A N/A N/A N/A N/A N/A 0.107±0.00 N/A N/A N/A N/A N/A N/A
ENST00000452244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455623 N/A N/A 0.062±0.00 N/A 0.358±0.00 N/A N/A N/A N/A N/A N/A 0.268±0.00 N/A N/A
ENST00000458713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.134±0.00 N/A
ENSG00000227110 ENST00000420095 N/A 0.032±0.00 N/A N/A 0.115±0.03 0.026±0.00 0.045±0.02 0.135±0.00 0.023±0.01 0.202±0.04 0.161±0.00 0.102±0.02 0.069±0.02 0.113±0.04
ENST00000439407 N/A N/A N/A N/A N/A 0.245±0.00 N/A N/A N/A N/A N/A 0.341±0.07 0.164±0.00 0.140±0.00
ENST00000441861 N/A N/A 0.093±0.00 N/A N/A 0.026±0.01 0.025±0.00 0.078±0.00 N/A N/A N/A 0.082±0.00 0.014±0.00 0.041±0.01
ENST00000446281 0.063±0.00 N/A N/A 0.718±0.00 0.369±0.00 N/A 0.159±0.00 N/A N/A 0.487±0.00 N/A 0.231±0.00 0.065±0.00 0.082±0.00
ENST00000452802 0.120±0.00 N/A 0.100±0.00 N/A 0.265±0.16 N/A 0.106±0.00 0.244±0.00 0.012±0.00 N/A N/A 0.117±0.00 0.029±0.00 0.057±0.01
ENST00000455811 N/A N/A N/A N/A N/A 0.108±0.00 N/A N/A 0.107±0.00 N/A N/A N/A 0.124±0.03 0.178±0.00
ENST00000458666 N/A 0.118±0.00 N/A N/A N/A N/A N/A 0.263±0.00 N/A N/A N/A N/A N/A 0.136±0.00
ENSG00000228351 ENST00000428171 N/A 0.062±0.00 N/A 0.042±0.00 N/A N/A 0.019±0.00 N/A 0.036±0.00 N/A N/A 0.110±0.00 N/A 0.060±0.00
ENSG00000231401 ENST00000435368 N/A 0.012±0.00 N/A 0.049±0.00 N/A N/A 0.083±0.00 N/A 0.168±0.00 N/A N/A 0.527±0.00 N/A 0.212±0.04
ENSG00000236152 ENST00000421291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.073±0.00
ENSG00000236202 ENST00000420230 0.072±0.00 N/A N/A 0.128±0.00 N/A N/A N/A N/A N/A N/A N/A 0.095±0.00 N/A N/A
ENST00000427273 N/A N/A N/A 0.095±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.329±0.00
ENSG00000237665 ENST00000427748 N/A N/A N/A 0.761±0.74 0.217±0.00 0.289±0.00 N/A N/A N/A N/A N/A N/A N/A 0.117±0.00
ENSG00000270207 ENST00000604028 N/A N/A N/A 0.030±0.01 0.008±0.00 N/A N/A N/A 0.023±0.00 N/A N/A N/A N/A 0.025±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000044574 ENSMUST00000053559 N/A N/A N/A N/A 0.065±0.01 0.028±0.00 0.027±0.00 N/A 0.003±0.00 N/A 0.032±0.02 0.091±0.03 0.013±0.00 0.021±0.02
ENSMUST00000188014 0.104±0.05 0.576±0.17 0.094±0.06 0.013±0.01 0.052±0.02 0.049±0.01 0.063±0.02 0.062±0.01 0.010±0.01 0.155±0.03 N/A 0.311±0.17 0.028±0.02 0.103±0.05
ENSMUSG00000056755 ENSMUST00000071076 0.364±0.04 0.241±0.07 0.106±0.00 4.895±0.00 0.034±0.01 0.174±0.07 0.084±0.03 0.243±0.20 0.016±0.01 0.012±0.00 N/A 0.709±0.37 0.015±0.00 0.172±0.11
ENSMUST00000172951 0.022±0.00 0.234±0.08 0.069±0.02 4.984±1.35 N/A 0.125±0.01 0.028±0.02 0.254±0.00 0.011±0.00 0.019±0.00 N/A 0.355±0.13 0.011±0.00 0.083±0.04
ENSMUST00000173001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.416±0.00 N/A 0.021±0.00
ENSMUST00000174310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000057604 ENSMUST00000032376 6.668±2.65 4.148±0.72 71.371±8.03 2.715±0.24 4.237±2.62 1.213±0.45 8.468±1.01 5.707±0.59 0.349±0.24 6.585±0.07 35.177±4.80 10.017±2.25 6.213±3.26 0.502±0.27
ENSMUSG00000092448 ENSMUST00000173609 N/A N/A N/A N/A 0.040±0.00 N/A N/A N/A 0.003±0.00 0.030±0.00 0.017±0.00 N/A 0.008±0.00 0.051±0.02
ENSMUSG00000092603 ENSMUST00000174010 N/A N/A N/A 8.461±4.31 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2043.912±1301.14
ENSMUSG00000100219 ENSMUST00000186102 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.360±0.12 N/A 1.306±0.68

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