| Source ID |
Type |
Tax ID |
Position |
| ENSMUSG00000071276-ENSMUSG00000071275 |
CGP |
10090 |
17:20113210-20183097  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0003AN_0009 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0003AN_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0008' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSDARG00000019093' => 'Uncharacterized protein',
'ENSDARG00000058547' => 'Uncharacterized protein',
'ENSDARG00000036728' => 'si:dkey-211g8.1',
'ENSDARG00000063111' => 'Uncharacterized protein',
'ENSDARG00000076574' => 'si:ch211-171h4.6',
'ENSG00000171049' => 'formyl peptide receptor 2',
'ENSG00000171051' => 'formyl peptide receptor 1',
'ENSG00000187474' => 'formyl peptide receptor 3',
'ENSMUSG00000045551' => 'formyl peptide receptor 1',
'ENSMUSG00000052270' => 'formyl peptide receptor 2',
'ENSMUSG00000079700' => 'formyl peptide receptor 3',
'ENSMUSG00000090957' => 'predicted gene 7535',
'ENSMUSG00000071275' => 'formyl peptide receptor, related sequence 6',
'ENSMUSG00000071276' => 'formyl peptide receptor, related sequence 7',
'ENSMUSG00000093401' => 'vomeronasal 2, receptor, pseudogene 126'
),
'gene_name_arr' => array(
'ENSDARG00000019093' => 'CABZ01029333.1',
'ENSDARG00000058547' => 'CABZ01029334.1',
'ENSDARG00000036728' => 'si:dkey-211g8.1',
'ENSDARG00000063111' => 'CABZ01029332.1',
'ENSDARG00000076574' => 'si:ch211-171h4.6',
'ENSG00000171049' => 'FPR2',
'ENSG00000171051' => 'FPR1',
'ENSG00000187474' => 'FPR3',
'ENSMUSG00000045551' => 'Fpr1',
'ENSMUSG00000052270' => 'Fpr2',
'ENSMUSG00000079700' => 'Fpr3',
'ENSMUSG00000090957' => 'Gm7535',
'ENSMUSG00000071275' => 'Fpr-rs6',
'ENSMUSG00000071276' => 'Fpr-rs7',
'ENSMUSG00000093401' => 'Vmn2r-ps126'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 7 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 8 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 24 => 'Bladder',
(int) 38 => 'Brain',
(int) 56 => 'Breast',
(int) 74 => 'Colon',
(int) 96 => 'Heart',
(int) 121 => 'Kidney',
(int) 147 => 'Liver',
(int) 168 => 'Lung',
(int) 184 => 'Muscle',
(int) 198 => 'Ovary',
(int) 218 => 'Placenta',
(int) 235 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 47,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENSDART00000091926' => array(
'start' => '11141054',
'end' => '11142081',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CABZ01029333.1-201'
),
'ENSDART00000091918' => array(
'start' => '11148973',
'end' => '11150089',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CABZ01029334.1-201'
),
'ENSDART00000003031' => array(
'start' => '11156498',
'end' => '11159896',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:dkey-211g8.1-201'
),
'ENSDART00000138706' => array(
'start' => '11157939',
'end' => '11159828',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:dkey-211g8.1-001'
),
'ENSDART00000053336' => array(
'start' => '11130958',
'end' => '11132059',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CABZ01029332.1-201'
),
'ENSDART00000091914' => array(
'start' => '11116137',
'end' => '11118661',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-171h4.6-201'
),
'ENSDART00000135719' => array(
'start' => '11108383',
'end' => '11118844',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-171h4.6-001'
),
'ENST00000340023' => array(
'start' => '51760851',
'end' => '51770526',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-001'
),
'ENST00000598776' => array(
'start' => '51762760',
'end' => '51770507',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-003'
),
'ENST00000598953' => array(
'start' => '51761212',
'end' => '51770013',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-002'
),
'ENST00000599326' => array(
'start' => '51761198',
'end' => '51769068',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-007'
),
'ENST00000600258' => array(
'start' => '51752026',
'end' => '51768923',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-006'
),
'ENST00000600722' => array(
'start' => '51768378',
'end' => '51769032',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-005'
),
'ENST00000304748' => array(
'start' => '51745172',
'end' => '51751909',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR1-001'
),
'ENST00000594900' => array(
'start' => '51746876',
'end' => '51804110',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR1-004'
),
'ENST00000595042' => array(
'start' => '51745172',
'end' => '51751893',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR1-003'
),
'ENST00000600815' => array(
'start' => '51746420',
'end' => '51750811',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR1-002'
),
'ENST00000339223' => array(
'start' => '51795163',
'end' => '51826189',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR3-001'
),
'ENST00000595991' => array(
'start' => '51817684',
'end' => '51825808',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR3-002'
),
'ENSMUST00000061516' => array(
'start' => '17876471',
'end' => '17883940',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr1-001'
),
'ENSMUST00000064068' => array(
'start' => '17887888',
'end' => '17893853',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr2-001'
),
'ENSMUST00000149944' => array(
'start' => '17887824',
'end' => '17893952',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Fpr2-002'
),
'ENSMUST00000054871' => array(
'start' => '17887852',
'end' => '17971677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr3-001'
),
'ENSMUST00000115565' => array(
'start' => '17970458',
'end' => '17971677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr3-201'
),
'ENSMUST00000164167' => array(
'start' => '17911039',
'end' => '17911947',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm7535-201'
),
'ENSMUST00000095636' => array(
'start' => '20182078',
'end' => '20183097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr-rs6-001'
),
'ENSMUST00000095637' => array(
'start' => '20113210',
'end' => '20114226',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr-rs7-001'
),
'ENSMUST00000176711' => array(
'start' => '20080674',
'end' => '20141273',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Vmn2r-ps126-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0003AN_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0008' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0003AN_0001' => array(
'genes_in_region' => array(
'ENSDARG00000019093' => array(
[maximum depth reached]
),
'ENSDARG00000058547' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Heart'
)
),
'CIL_0003AN_0002' => array(
'genes_in_region' => array(
'ENSDARG00000036728' => array(
[maximum depth reached]
),
'ENSDARG00000058547' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Kidney',
(int) 2 => 'Heart'
)
),
'CIL_0003AN_0003' => array(
'genes_in_region' => array(
'ENSDARG00000019093' => array(
[maximum depth reached]
),
'ENSDARG00000063111' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Brain',
(int) 2 => 'Heart',
(int) 3 => 'Kidney'
)
),
'CIL_0003AN_0004' => array(
'genes_in_region' => array(
'ENSDARG00000063111' => array(
[maximum depth reached]
),
'ENSDARG00000076574' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Heart',
(int) 4 => 'Kidney',
(int) 5 => 'Muscle',
(int) 6 => 'Brain',
(int) 7 => 'Heart',
(int) 8 => 'Liver'
)
),
'CIL_0003AN_0005' => array(
'genes_in_region' => array(
'ENSG00000171049' => array(
[maximum depth reached]
),
'ENSG00000171051' => array(
[maximum depth reached]
),
'ENSG00000187474' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Colon',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Lung',
(int) 5 => 'Placenta',
(int) 6 => 'Testis',
(int) 7 => 'Heart',
(int) 8 => 'Liver',
(int) 9 => 'Ovary',
(int) 10 => 'Testis',
(int) 11 => 'Bladder',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Lung',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Adrenal',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Kidney',
(int) 26 => 'Ovary',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Muscle',
(int) 39 => 'Ovary',
(int) 40 => 'Placenta',
(int) 41 => 'Testis',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Muscle',
(int) 45 => 'Bladder',
(int) 46 => 'Breast',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Brain',
(int) 50 => 'Colon',
(int) 51 => 'Heart',
(int) 52 => 'Kidney',
(int) 53 => 'Liver',
(int) 54 => 'Testis',
(int) 55 => 'Adipose',
(int) 56 => 'Adrenal',
(int) 57 => 'Bladder',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Testis',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Muscle',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta'
)
),
'CIL_0003AN_0006' => array(
'genes_in_region' => array(
'ENSG00000171049' => array(
[maximum depth reached]
),
'ENSG00000171051' => array(
[maximum depth reached]
),
'ENSG00000187474' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Colon',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Lung',
(int) 5 => 'Placenta',
(int) 6 => 'Testis',
(int) 7 => 'Heart',
(int) 8 => 'Liver',
(int) 9 => 'Ovary',
(int) 10 => 'Testis',
(int) 11 => 'Bladder',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Lung',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Adrenal',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Kidney',
(int) 26 => 'Ovary',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Muscle',
(int) 39 => 'Ovary',
(int) 40 => 'Placenta',
(int) 41 => 'Testis',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Muscle',
(int) 45 => 'Bladder',
(int) 46 => 'Breast',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Brain',
(int) 50 => 'Colon',
(int) 51 => 'Heart',
(int) 52 => 'Kidney',
(int) 53 => 'Liver',
(int) 54 => 'Testis',
(int) 55 => 'Adipose',
(int) 56 => 'Adrenal',
(int) 57 => 'Bladder',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Testis',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Muscle',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta'
)
),
'CIL_0003AN_0007' => array(
'genes_in_region' => array(
'ENSMUSG00000045551' => array(
[maximum depth reached]
),
'ENSMUSG00000052270' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Adipose',
(int) 27 => 'Adrenal',
(int) 28 => 'Bladder',
(int) 29 => 'Brain',
(int) 30 => 'Breast',
(int) 31 => 'Colon',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta'
)
),
'CIL_0003AN_0008' => array(
'genes_in_region' => array(
'ENSMUSG00000052270' => array(
[maximum depth reached]
),
'ENSMUSG00000090957' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Adipose',
(int) 27 => 'Adrenal',
(int) 28 => 'Bladder',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSDARG00000019093' => 'Uncharacterized protein',
'ENSDARG00000058547' => 'Uncharacterized protein',
'ENSDARG00000036728' => 'si:dkey-211g8.1',
'ENSDARG00000063111' => 'Uncharacterized protein',
'ENSDARG00000076574' => 'si:ch211-171h4.6',
'ENSG00000171049' => 'formyl peptide receptor 2',
'ENSG00000171051' => 'formyl peptide receptor 1',
'ENSG00000187474' => 'formyl peptide receptor 3',
'ENSMUSG00000045551' => 'formyl peptide receptor 1',
'ENSMUSG00000052270' => 'formyl peptide receptor 2',
'ENSMUSG00000079700' => 'formyl peptide receptor 3',
'ENSMUSG00000090957' => 'predicted gene 7535',
'ENSMUSG00000071275' => 'formyl peptide receptor, related sequence 6',
'ENSMUSG00000071276' => 'formyl peptide receptor, related sequence 7',
'ENSMUSG00000093401' => 'vomeronasal 2, receptor, pseudogene 126'
)
$gene_name_arr = array(
'ENSDARG00000019093' => 'CABZ01029333.1',
'ENSDARG00000058547' => 'CABZ01029334.1',
'ENSDARG00000036728' => 'si:dkey-211g8.1',
'ENSDARG00000063111' => 'CABZ01029332.1',
'ENSDARG00000076574' => 'si:ch211-171h4.6',
'ENSG00000171049' => 'FPR2',
'ENSG00000171051' => 'FPR1',
'ENSG00000187474' => 'FPR3',
'ENSMUSG00000045551' => 'Fpr1',
'ENSMUSG00000052270' => 'Fpr2',
'ENSMUSG00000079700' => 'Fpr3',
'ENSMUSG00000090957' => 'Gm7535',
'ENSMUSG00000071275' => 'Fpr-rs6',
'ENSMUSG00000071276' => 'Fpr-rs7',
'ENSMUSG00000093401' => 'Vmn2r-ps126'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0003AN_0001',
'tax_id' => '7955',
'chromosome' => '19',
'seq_start' => '11141054',
'seq_end' => '11150089',
'region_length' => '9035',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000019093-ENSDARG00000058547'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0003AN_0002',
'tax_id' => '7955',
'chromosome' => '19',
'seq_start' => '11148973',
'seq_end' => '11159896',
'region_length' => '10923',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000058547-ENSDARG00000036728'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0003AN_0003',
'tax_id' => '7955',
'chromosome' => '19',
'seq_start' => '11130958',
'seq_end' => '11142081',
'region_length' => '11123',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000063111-ENSDARG00000019093'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0003AN_0004',
'tax_id' => '7955',
'chromosome' => '19',
'seq_start' => '11108383',
'seq_end' => '11132059',
'region_length' => '23676',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000076574-ENSDARG00000063111'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0003AN_0005',
'tax_id' => '9606',
'chromosome' => '19',
'seq_start' => '51752026',
'seq_end' => '51826189',
'region_length' => '74163',
'region_type' => 'CGP',
'el_id' => 'ENSG00000171049-ENSG00000187474'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0003AN_0006',
'tax_id' => '9606',
'chromosome' => '19',
'seq_start' => '51745172',
'seq_end' => '51804110',
'region_length' => '58938',
'region_type' => 'CGP',
'el_id' => 'ENSG00000171051-ENSG00000171051'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0003AN_0007',
'tax_id' => '10090',
'chromosome' => '17',
'seq_start' => '17876471',
'seq_end' => '17893952',
'region_length' => '17481',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000045551-ENSMUSG00000052270'
)
),
(int) 7 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0003AN_0008',
'tax_id' => '10090',
'chromosome' => '17',
'seq_start' => '17887824',
'seq_end' => '17971677',
'region_length' => '83853',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000052270-ENSMUSG00000079700'
)
),
(int) 8 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0003AN_0009',
'tax_id' => '10090',
'chromosome' => '17',
'seq_start' => '20113210',
'seq_end' => '20183097',
'region_length' => '69887',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000071276-ENSMUSG00000071275'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 24 => 'Bladder',
(int) 38 => 'Brain',
(int) 56 => 'Breast',
(int) 74 => 'Colon',
(int) 96 => 'Heart',
(int) 121 => 'Kidney',
(int) 147 => 'Liver',
(int) 168 => 'Lung',
(int) 184 => 'Muscle',
(int) 198 => 'Ovary',
(int) 218 => 'Placenta',
(int) 235 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 47
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENSDART00000091926' => array(
'start' => '11141054',
'end' => '11142081',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CABZ01029333.1-201'
),
'ENSDART00000091918' => array(
'start' => '11148973',
'end' => '11150089',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CABZ01029334.1-201'
),
'ENSDART00000003031' => array(
'start' => '11156498',
'end' => '11159896',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:dkey-211g8.1-201'
),
'ENSDART00000138706' => array(
'start' => '11157939',
'end' => '11159828',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:dkey-211g8.1-001'
),
'ENSDART00000053336' => array(
'start' => '11130958',
'end' => '11132059',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CABZ01029332.1-201'
),
'ENSDART00000091914' => array(
'start' => '11116137',
'end' => '11118661',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-171h4.6-201'
),
'ENSDART00000135719' => array(
'start' => '11108383',
'end' => '11118844',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-171h4.6-001'
),
'ENST00000340023' => array(
'start' => '51760851',
'end' => '51770526',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-001'
),
'ENST00000598776' => array(
'start' => '51762760',
'end' => '51770507',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-003'
),
'ENST00000598953' => array(
'start' => '51761212',
'end' => '51770013',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-002'
),
'ENST00000599326' => array(
'start' => '51761198',
'end' => '51769068',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-007'
),
'ENST00000600258' => array(
'start' => '51752026',
'end' => '51768923',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-006'
),
'ENST00000600722' => array(
'start' => '51768378',
'end' => '51769032',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-005'
),
'ENST00000304748' => array(
'start' => '51745172',
'end' => '51751909',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR1-001'
),
'ENST00000594900' => array(
'start' => '51746876',
'end' => '51804110',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR1-004'
),
'ENST00000595042' => array(
'start' => '51745172',
'end' => '51751893',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR1-003'
),
'ENST00000600815' => array(
'start' => '51746420',
'end' => '51750811',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR1-002'
),
'ENST00000339223' => array(
'start' => '51795163',
'end' => '51826189',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR3-001'
),
'ENST00000595991' => array(
'start' => '51817684',
'end' => '51825808',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR3-002'
),
'ENSMUST00000061516' => array(
'start' => '17876471',
'end' => '17883940',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr1-001'
),
'ENSMUST00000064068' => array(
'start' => '17887888',
'end' => '17893853',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr2-001'
),
'ENSMUST00000149944' => array(
'start' => '17887824',
'end' => '17893952',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Fpr2-002'
),
'ENSMUST00000054871' => array(
'start' => '17887852',
'end' => '17971677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr3-001'
),
'ENSMUST00000115565' => array(
'start' => '17970458',
'end' => '17971677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr3-201'
),
'ENSMUST00000164167' => array(
'start' => '17911039',
'end' => '17911947',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm7535-201'
),
'ENSMUST00000095636' => array(
'start' => '20182078',
'end' => '20183097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr-rs6-001'
),
'ENSMUST00000095637' => array(
'start' => '20113210',
'end' => '20114226',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr-rs7-001'
),
'ENSMUST00000176711' => array(
'start' => '20080674',
'end' => '20141273',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Vmn2r-ps126-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0003AN_0001' => array(
'genes_in_region' => array(
'ENSDARG00000019093' => array(
[maximum depth reached]
),
'ENSDARG00000058547' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Heart'
)
),
'CIL_0003AN_0002' => array(
'genes_in_region' => array(
'ENSDARG00000036728' => array(
[maximum depth reached]
),
'ENSDARG00000058547' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Kidney',
(int) 2 => 'Heart'
)
),
'CIL_0003AN_0003' => array(
'genes_in_region' => array(
'ENSDARG00000019093' => array(
[maximum depth reached]
),
'ENSDARG00000063111' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Brain',
(int) 2 => 'Heart',
(int) 3 => 'Kidney'
)
),
'CIL_0003AN_0004' => array(
'genes_in_region' => array(
'ENSDARG00000063111' => array(
[maximum depth reached]
),
'ENSDARG00000076574' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Heart',
(int) 4 => 'Kidney',
(int) 5 => 'Muscle',
(int) 6 => 'Brain',
(int) 7 => 'Heart',
(int) 8 => 'Liver'
)
),
'CIL_0003AN_0005' => array(
'genes_in_region' => array(
'ENSG00000171049' => array(
[maximum depth reached]
),
'ENSG00000171051' => array(
[maximum depth reached]
),
'ENSG00000187474' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Colon',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Lung',
(int) 5 => 'Placenta',
(int) 6 => 'Testis',
(int) 7 => 'Heart',
(int) 8 => 'Liver',
(int) 9 => 'Ovary',
(int) 10 => 'Testis',
(int) 11 => 'Bladder',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Lung',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Adrenal',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Kidney',
(int) 26 => 'Ovary',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Muscle',
(int) 39 => 'Ovary',
(int) 40 => 'Placenta',
(int) 41 => 'Testis',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Muscle',
(int) 45 => 'Bladder',
(int) 46 => 'Breast',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Brain',
(int) 50 => 'Colon',
(int) 51 => 'Heart',
(int) 52 => 'Kidney',
(int) 53 => 'Liver',
(int) 54 => 'Testis',
(int) 55 => 'Adipose',
(int) 56 => 'Adrenal',
(int) 57 => 'Bladder',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Testis',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Muscle',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta'
)
),
'CIL_0003AN_0006' => array(
'genes_in_region' => array(
'ENSG00000171049' => array(
[maximum depth reached]
),
'ENSG00000171051' => array(
[maximum depth reached]
),
'ENSG00000187474' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Colon',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Lung',
(int) 5 => 'Placenta',
(int) 6 => 'Testis',
(int) 7 => 'Heart',
(int) 8 => 'Liver',
(int) 9 => 'Ovary',
(int) 10 => 'Testis',
(int) 11 => 'Bladder',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Lung',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Adrenal',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Kidney',
(int) 26 => 'Ovary',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Muscle',
(int) 39 => 'Ovary',
(int) 40 => 'Placenta',
(int) 41 => 'Testis',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Muscle',
(int) 45 => 'Bladder',
(int) 46 => 'Breast',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Brain',
(int) 50 => 'Colon',
(int) 51 => 'Heart',
(int) 52 => 'Kidney',
(int) 53 => 'Liver',
(int) 54 => 'Testis',
(int) 55 => 'Adipose',
(int) 56 => 'Adrenal',
(int) 57 => 'Bladder',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Testis',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Muscle',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta'
)
),
'CIL_0003AN_0007' => array(
'genes_in_region' => array(
'ENSMUSG00000045551' => array(
[maximum depth reached]
),
'ENSMUSG00000052270' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Adipose',
(int) 27 => 'Adrenal',
(int) 28 => 'Bladder',
(int) 29 => 'Brain',
(int) 30 => 'Breast',
(int) 31 => 'Colon',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta'
)
),
'CIL_0003AN_0008' => array(
'genes_in_region' => array(
'ENSMUSG00000052270' => array(
[maximum depth reached]
),
'ENSMUSG00000090957' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Adipose',
(int) 27 => 'Adrenal',
(int) 28 => 'Bladder',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0003AN_0009',
'tax_id' => '10090',
'chromosome' => '17',
'seq_start' => '20113210',
'seq_end' => '20183097',
'region_length' => '69887',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000071276-ENSMUSG00000071275'
)
)
$gene_el = array(
'ENSMUST00000164167' => array(
'Adipose' => array(
'average_FPKM' => '0.223',
'stddev_FPKM' => '0.09'
),
'Adrenal' => array(
'average_FPKM' => '0.229',
'stddev_FPKM' => '0.05'
),
'Bladder' => array(
'average_FPKM' => '0.086',
'stddev_FPKM' => '0.03'
),
'Breast' => array(
'average_FPKM' => '0.181',
'stddev_FPKM' => '0.03'
),
'Colon' => array(
'average_FPKM' => '0.131',
'stddev_FPKM' => '0.08'
),
'Heart' => array(
'average_FPKM' => '0.154',
'stddev_FPKM' => '0.10'
),
'Kidney' => array(
'average_FPKM' => '0.116',
'stddev_FPKM' => '0.03'
),
'Liver' => array(
'average_FPKM' => '0.080',
'stddev_FPKM' => '0.08'
),
'Lung' => array(
'average_FPKM' => '0.190',
'stddev_FPKM' => '0.11'
),
'Muscle' => array(
'average_FPKM' => '0.033',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.436',
'stddev_FPKM' => '0.25'
),
'Testis' => array(
'average_FPKM' => '0.542',
'stddev_FPKM' => '0.28'
)
)
)
$gene_key = 'ENSMUSG00000090957'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.223',
'stddev_FPKM' => '0.09'
),
'Adrenal' => array(
'average_FPKM' => '0.229',
'stddev_FPKM' => '0.05'
),
'Bladder' => array(
'average_FPKM' => '0.086',
'stddev_FPKM' => '0.03'
),
'Breast' => array(
'average_FPKM' => '0.181',
'stddev_FPKM' => '0.03'
),
'Colon' => array(
'average_FPKM' => '0.131',
'stddev_FPKM' => '0.08'
),
'Heart' => array(
'average_FPKM' => '0.154',
'stddev_FPKM' => '0.10'
),
'Kidney' => array(
'average_FPKM' => '0.116',
'stddev_FPKM' => '0.03'
),
'Liver' => array(
'average_FPKM' => '0.080',
'stddev_FPKM' => '0.08'
),
'Lung' => array(
'average_FPKM' => '0.190',
'stddev_FPKM' => '0.11'
),
'Muscle' => array(
'average_FPKM' => '0.033',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.436',
'stddev_FPKM' => '0.25'
),
'Testis' => array(
'average_FPKM' => '0.542',
'stddev_FPKM' => '0.28'
)
)
$tran_key = 'ENSMUST00000164167'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0003AN_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0008' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSDARG00000019093' => 'Uncharacterized protein',
'ENSDARG00000058547' => 'Uncharacterized protein',
'ENSDARG00000036728' => 'si:dkey-211g8.1',
'ENSDARG00000063111' => 'Uncharacterized protein',
'ENSDARG00000076574' => 'si:ch211-171h4.6',
'ENSG00000171049' => 'formyl peptide receptor 2',
'ENSG00000171051' => 'formyl peptide receptor 1',
'ENSG00000187474' => 'formyl peptide receptor 3',
'ENSMUSG00000045551' => 'formyl peptide receptor 1',
'ENSMUSG00000052270' => 'formyl peptide receptor 2',
'ENSMUSG00000079700' => 'formyl peptide receptor 3',
'ENSMUSG00000090957' => 'predicted gene 7535',
'ENSMUSG00000071275' => 'formyl peptide receptor, related sequence 6',
'ENSMUSG00000071276' => 'formyl peptide receptor, related sequence 7',
'ENSMUSG00000093401' => 'vomeronasal 2, receptor, pseudogene 126'
),
'gene_name_arr' => array(
'ENSDARG00000019093' => 'CABZ01029333.1',
'ENSDARG00000058547' => 'CABZ01029334.1',
'ENSDARG00000036728' => 'si:dkey-211g8.1',
'ENSDARG00000063111' => 'CABZ01029332.1',
'ENSDARG00000076574' => 'si:ch211-171h4.6',
'ENSG00000171049' => 'FPR2',
'ENSG00000171051' => 'FPR1',
'ENSG00000187474' => 'FPR3',
'ENSMUSG00000045551' => 'Fpr1',
'ENSMUSG00000052270' => 'Fpr2',
'ENSMUSG00000079700' => 'Fpr3',
'ENSMUSG00000090957' => 'Gm7535',
'ENSMUSG00000071275' => 'Fpr-rs6',
'ENSMUSG00000071276' => 'Fpr-rs7',
'ENSMUSG00000093401' => 'Vmn2r-ps126'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 7 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 8 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 24 => 'Bladder',
(int) 38 => 'Brain',
(int) 56 => 'Breast',
(int) 74 => 'Colon',
(int) 96 => 'Heart',
(int) 121 => 'Kidney',
(int) 147 => 'Liver',
(int) 168 => 'Lung',
(int) 184 => 'Muscle',
(int) 198 => 'Ovary',
(int) 218 => 'Placenta',
(int) 235 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 47,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENSDART00000091926' => array(
'start' => '11141054',
'end' => '11142081',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CABZ01029333.1-201'
),
'ENSDART00000091918' => array(
'start' => '11148973',
'end' => '11150089',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CABZ01029334.1-201'
),
'ENSDART00000003031' => array(
'start' => '11156498',
'end' => '11159896',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:dkey-211g8.1-201'
),
'ENSDART00000138706' => array(
'start' => '11157939',
'end' => '11159828',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:dkey-211g8.1-001'
),
'ENSDART00000053336' => array(
'start' => '11130958',
'end' => '11132059',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CABZ01029332.1-201'
),
'ENSDART00000091914' => array(
'start' => '11116137',
'end' => '11118661',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-171h4.6-201'
),
'ENSDART00000135719' => array(
'start' => '11108383',
'end' => '11118844',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-171h4.6-001'
),
'ENST00000340023' => array(
'start' => '51760851',
'end' => '51770526',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-001'
),
'ENST00000598776' => array(
'start' => '51762760',
'end' => '51770507',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-003'
),
'ENST00000598953' => array(
'start' => '51761212',
'end' => '51770013',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-002'
),
'ENST00000599326' => array(
'start' => '51761198',
'end' => '51769068',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-007'
),
'ENST00000600258' => array(
'start' => '51752026',
'end' => '51768923',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-006'
),
'ENST00000600722' => array(
'start' => '51768378',
'end' => '51769032',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-005'
),
'ENST00000304748' => array(
'start' => '51745172',
'end' => '51751909',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR1-001'
),
'ENST00000594900' => array(
'start' => '51746876',
'end' => '51804110',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR1-004'
),
'ENST00000595042' => array(
'start' => '51745172',
'end' => '51751893',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR1-003'
),
'ENST00000600815' => array(
'start' => '51746420',
'end' => '51750811',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR1-002'
),
'ENST00000339223' => array(
'start' => '51795163',
'end' => '51826189',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR3-001'
),
'ENST00000595991' => array(
'start' => '51817684',
'end' => '51825808',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR3-002'
),
'ENSMUST00000061516' => array(
'start' => '17876471',
'end' => '17883940',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr1-001'
),
'ENSMUST00000064068' => array(
'start' => '17887888',
'end' => '17893853',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr2-001'
),
'ENSMUST00000149944' => array(
'start' => '17887824',
'end' => '17893952',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Fpr2-002'
),
'ENSMUST00000054871' => array(
'start' => '17887852',
'end' => '17971677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr3-001'
),
'ENSMUST00000115565' => array(
'start' => '17970458',
'end' => '17971677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr3-201'
),
'ENSMUST00000164167' => array(
'start' => '17911039',
'end' => '17911947',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm7535-201'
),
'ENSMUST00000095636' => array(
'start' => '20182078',
'end' => '20183097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr-rs6-001'
),
'ENSMUST00000095637' => array(
'start' => '20113210',
'end' => '20114226',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr-rs7-001'
),
'ENSMUST00000176711' => array(
'start' => '20080674',
'end' => '20141273',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Vmn2r-ps126-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0003AN_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0007' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0003AN_0008' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0003AN_0001' => array(
'genes_in_region' => array(
'ENSDARG00000019093' => array(
[maximum depth reached]
),
'ENSDARG00000058547' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Heart'
)
),
'CIL_0003AN_0002' => array(
'genes_in_region' => array(
'ENSDARG00000036728' => array(
[maximum depth reached]
),
'ENSDARG00000058547' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Kidney',
(int) 2 => 'Heart'
)
),
'CIL_0003AN_0003' => array(
'genes_in_region' => array(
'ENSDARG00000019093' => array(
[maximum depth reached]
),
'ENSDARG00000063111' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Brain',
(int) 2 => 'Heart',
(int) 3 => 'Kidney'
)
),
'CIL_0003AN_0004' => array(
'genes_in_region' => array(
'ENSDARG00000063111' => array(
[maximum depth reached]
),
'ENSDARG00000076574' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Heart',
(int) 4 => 'Kidney',
(int) 5 => 'Muscle',
(int) 6 => 'Brain',
(int) 7 => 'Heart',
(int) 8 => 'Liver'
)
),
'CIL_0003AN_0005' => array(
'genes_in_region' => array(
'ENSG00000171049' => array(
[maximum depth reached]
),
'ENSG00000171051' => array(
[maximum depth reached]
),
'ENSG00000187474' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Colon',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Lung',
(int) 5 => 'Placenta',
(int) 6 => 'Testis',
(int) 7 => 'Heart',
(int) 8 => 'Liver',
(int) 9 => 'Ovary',
(int) 10 => 'Testis',
(int) 11 => 'Bladder',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Lung',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Adrenal',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Kidney',
(int) 26 => 'Ovary',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Muscle',
(int) 39 => 'Ovary',
(int) 40 => 'Placenta',
(int) 41 => 'Testis',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Muscle',
(int) 45 => 'Bladder',
(int) 46 => 'Breast',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Brain',
(int) 50 => 'Colon',
(int) 51 => 'Heart',
(int) 52 => 'Kidney',
(int) 53 => 'Liver',
(int) 54 => 'Testis',
(int) 55 => 'Adipose',
(int) 56 => 'Adrenal',
(int) 57 => 'Bladder',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Testis',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Muscle',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta'
)
),
'CIL_0003AN_0006' => array(
'genes_in_region' => array(
'ENSG00000171049' => array(
[maximum depth reached]
),
'ENSG00000171051' => array(
[maximum depth reached]
),
'ENSG00000187474' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Colon',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Lung',
(int) 5 => 'Placenta',
(int) 6 => 'Testis',
(int) 7 => 'Heart',
(int) 8 => 'Liver',
(int) 9 => 'Ovary',
(int) 10 => 'Testis',
(int) 11 => 'Bladder',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Lung',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Adrenal',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Kidney',
(int) 26 => 'Ovary',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Muscle',
(int) 39 => 'Ovary',
(int) 40 => 'Placenta',
(int) 41 => 'Testis',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Muscle',
(int) 45 => 'Bladder',
(int) 46 => 'Breast',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Brain',
(int) 50 => 'Colon',
(int) 51 => 'Heart',
(int) 52 => 'Kidney',
(int) 53 => 'Liver',
(int) 54 => 'Testis',
(int) 55 => 'Adipose',
(int) 56 => 'Adrenal',
(int) 57 => 'Bladder',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Testis',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Muscle',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta'
)
),
'CIL_0003AN_0007' => array(
'genes_in_region' => array(
'ENSMUSG00000045551' => array(
[maximum depth reached]
),
'ENSMUSG00000052270' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Adipose',
(int) 27 => 'Adrenal',
(int) 28 => 'Bladder',
(int) 29 => 'Brain',
(int) 30 => 'Breast',
(int) 31 => 'Colon',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta'
)
),
'CIL_0003AN_0008' => array(
'genes_in_region' => array(
'ENSMUSG00000052270' => array(
[maximum depth reached]
),
'ENSMUSG00000090957' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Adipose',
(int) 27 => 'Adrenal',
(int) 28 => 'Bladder',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSDARG00000019093' => 'Uncharacterized protein',
'ENSDARG00000058547' => 'Uncharacterized protein',
'ENSDARG00000036728' => 'si:dkey-211g8.1',
'ENSDARG00000063111' => 'Uncharacterized protein',
'ENSDARG00000076574' => 'si:ch211-171h4.6',
'ENSG00000171049' => 'formyl peptide receptor 2',
'ENSG00000171051' => 'formyl peptide receptor 1',
'ENSG00000187474' => 'formyl peptide receptor 3',
'ENSMUSG00000045551' => 'formyl peptide receptor 1',
'ENSMUSG00000052270' => 'formyl peptide receptor 2',
'ENSMUSG00000079700' => 'formyl peptide receptor 3',
'ENSMUSG00000090957' => 'predicted gene 7535',
'ENSMUSG00000071275' => 'formyl peptide receptor, related sequence 6',
'ENSMUSG00000071276' => 'formyl peptide receptor, related sequence 7',
'ENSMUSG00000093401' => 'vomeronasal 2, receptor, pseudogene 126'
)
$gene_name_arr = array(
'ENSDARG00000019093' => 'CABZ01029333.1',
'ENSDARG00000058547' => 'CABZ01029334.1',
'ENSDARG00000036728' => 'si:dkey-211g8.1',
'ENSDARG00000063111' => 'CABZ01029332.1',
'ENSDARG00000076574' => 'si:ch211-171h4.6',
'ENSG00000171049' => 'FPR2',
'ENSG00000171051' => 'FPR1',
'ENSG00000187474' => 'FPR3',
'ENSMUSG00000045551' => 'Fpr1',
'ENSMUSG00000052270' => 'Fpr2',
'ENSMUSG00000079700' => 'Fpr3',
'ENSMUSG00000090957' => 'Gm7535',
'ENSMUSG00000071275' => 'Fpr-rs6',
'ENSMUSG00000071276' => 'Fpr-rs7',
'ENSMUSG00000093401' => 'Vmn2r-ps126'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0003AN_0001',
'tax_id' => '7955',
'chromosome' => '19',
'seq_start' => '11141054',
'seq_end' => '11150089',
'region_length' => '9035',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000019093-ENSDARG00000058547'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0003AN_0002',
'tax_id' => '7955',
'chromosome' => '19',
'seq_start' => '11148973',
'seq_end' => '11159896',
'region_length' => '10923',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000058547-ENSDARG00000036728'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0003AN_0003',
'tax_id' => '7955',
'chromosome' => '19',
'seq_start' => '11130958',
'seq_end' => '11142081',
'region_length' => '11123',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000063111-ENSDARG00000019093'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0003AN_0004',
'tax_id' => '7955',
'chromosome' => '19',
'seq_start' => '11108383',
'seq_end' => '11132059',
'region_length' => '23676',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000076574-ENSDARG00000063111'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0003AN_0005',
'tax_id' => '9606',
'chromosome' => '19',
'seq_start' => '51752026',
'seq_end' => '51826189',
'region_length' => '74163',
'region_type' => 'CGP',
'el_id' => 'ENSG00000171049-ENSG00000187474'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0003AN_0006',
'tax_id' => '9606',
'chromosome' => '19',
'seq_start' => '51745172',
'seq_end' => '51804110',
'region_length' => '58938',
'region_type' => 'CGP',
'el_id' => 'ENSG00000171051-ENSG00000171051'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0003AN_0007',
'tax_id' => '10090',
'chromosome' => '17',
'seq_start' => '17876471',
'seq_end' => '17893952',
'region_length' => '17481',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000045551-ENSMUSG00000052270'
)
),
(int) 7 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0003AN_0008',
'tax_id' => '10090',
'chromosome' => '17',
'seq_start' => '17887824',
'seq_end' => '17971677',
'region_length' => '83853',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000052270-ENSMUSG00000079700'
)
),
(int) 8 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0003AN_0009',
'tax_id' => '10090',
'chromosome' => '17',
'seq_start' => '20113210',
'seq_end' => '20183097',
'region_length' => '69887',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000071276-ENSMUSG00000071275'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 24 => 'Bladder',
(int) 38 => 'Brain',
(int) 56 => 'Breast',
(int) 74 => 'Colon',
(int) 96 => 'Heart',
(int) 121 => 'Kidney',
(int) 147 => 'Liver',
(int) 168 => 'Lung',
(int) 184 => 'Muscle',
(int) 198 => 'Ovary',
(int) 218 => 'Placenta',
(int) 235 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 47
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENSDART00000091926' => array(
'start' => '11141054',
'end' => '11142081',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CABZ01029333.1-201'
),
'ENSDART00000091918' => array(
'start' => '11148973',
'end' => '11150089',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CABZ01029334.1-201'
),
'ENSDART00000003031' => array(
'start' => '11156498',
'end' => '11159896',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:dkey-211g8.1-201'
),
'ENSDART00000138706' => array(
'start' => '11157939',
'end' => '11159828',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:dkey-211g8.1-001'
),
'ENSDART00000053336' => array(
'start' => '11130958',
'end' => '11132059',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CABZ01029332.1-201'
),
'ENSDART00000091914' => array(
'start' => '11116137',
'end' => '11118661',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-171h4.6-201'
),
'ENSDART00000135719' => array(
'start' => '11108383',
'end' => '11118844',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'si:ch211-171h4.6-001'
),
'ENST00000340023' => array(
'start' => '51760851',
'end' => '51770526',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-001'
),
'ENST00000598776' => array(
'start' => '51762760',
'end' => '51770507',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-003'
),
'ENST00000598953' => array(
'start' => '51761212',
'end' => '51770013',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-002'
),
'ENST00000599326' => array(
'start' => '51761198',
'end' => '51769068',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-007'
),
'ENST00000600258' => array(
'start' => '51752026',
'end' => '51768923',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-006'
),
'ENST00000600722' => array(
'start' => '51768378',
'end' => '51769032',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR2-005'
),
'ENST00000304748' => array(
'start' => '51745172',
'end' => '51751909',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR1-001'
),
'ENST00000594900' => array(
'start' => '51746876',
'end' => '51804110',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR1-004'
),
'ENST00000595042' => array(
'start' => '51745172',
'end' => '51751893',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR1-003'
),
'ENST00000600815' => array(
'start' => '51746420',
'end' => '51750811',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR1-002'
),
'ENST00000339223' => array(
'start' => '51795163',
'end' => '51826189',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR3-001'
),
'ENST00000595991' => array(
'start' => '51817684',
'end' => '51825808',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FPR3-002'
),
'ENSMUST00000061516' => array(
'start' => '17876471',
'end' => '17883940',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr1-001'
),
'ENSMUST00000064068' => array(
'start' => '17887888',
'end' => '17893853',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr2-001'
),
'ENSMUST00000149944' => array(
'start' => '17887824',
'end' => '17893952',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Fpr2-002'
),
'ENSMUST00000054871' => array(
'start' => '17887852',
'end' => '17971677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr3-001'
),
'ENSMUST00000115565' => array(
'start' => '17970458',
'end' => '17971677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr3-201'
),
'ENSMUST00000164167' => array(
'start' => '17911039',
'end' => '17911947',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm7535-201'
),
'ENSMUST00000095636' => array(
'start' => '20182078',
'end' => '20183097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr-rs6-001'
),
'ENSMUST00000095637' => array(
'start' => '20113210',
'end' => '20114226',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fpr-rs7-001'
),
'ENSMUST00000176711' => array(
'start' => '20080674',
'end' => '20141273',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Vmn2r-ps126-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0003AN_0001' => array(
'genes_in_region' => array(
'ENSDARG00000019093' => array(
[maximum depth reached]
),
'ENSDARG00000058547' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Heart'
)
),
'CIL_0003AN_0002' => array(
'genes_in_region' => array(
'ENSDARG00000036728' => array(
[maximum depth reached]
),
'ENSDARG00000058547' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Kidney',
(int) 2 => 'Heart'
)
),
'CIL_0003AN_0003' => array(
'genes_in_region' => array(
'ENSDARG00000019093' => array(
[maximum depth reached]
),
'ENSDARG00000063111' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Kidney',
(int) 1 => 'Brain',
(int) 2 => 'Heart',
(int) 3 => 'Kidney'
)
),
'CIL_0003AN_0004' => array(
'genes_in_region' => array(
'ENSDARG00000063111' => array(
[maximum depth reached]
),
'ENSDARG00000076574' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Heart',
(int) 4 => 'Kidney',
(int) 5 => 'Muscle',
(int) 6 => 'Brain',
(int) 7 => 'Heart',
(int) 8 => 'Liver'
)
),
'CIL_0003AN_0005' => array(
'genes_in_region' => array(
'ENSG00000171049' => array(
[maximum depth reached]
),
'ENSG00000171051' => array(
[maximum depth reached]
),
'ENSG00000187474' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Colon',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Lung',
(int) 5 => 'Placenta',
(int) 6 => 'Testis',
(int) 7 => 'Heart',
(int) 8 => 'Liver',
(int) 9 => 'Ovary',
(int) 10 => 'Testis',
(int) 11 => 'Bladder',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Lung',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Adrenal',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Kidney',
(int) 26 => 'Ovary',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Muscle',
(int) 39 => 'Ovary',
(int) 40 => 'Placenta',
(int) 41 => 'Testis',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Muscle',
(int) 45 => 'Bladder',
(int) 46 => 'Breast',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Brain',
(int) 50 => 'Colon',
(int) 51 => 'Heart',
(int) 52 => 'Kidney',
(int) 53 => 'Liver',
(int) 54 => 'Testis',
(int) 55 => 'Adipose',
(int) 56 => 'Adrenal',
(int) 57 => 'Bladder',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Testis',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Muscle',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta'
)
),
'CIL_0003AN_0006' => array(
'genes_in_region' => array(
'ENSG00000171049' => array(
[maximum depth reached]
),
'ENSG00000171051' => array(
[maximum depth reached]
),
'ENSG00000187474' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Colon',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Lung',
(int) 5 => 'Placenta',
(int) 6 => 'Testis',
(int) 7 => 'Heart',
(int) 8 => 'Liver',
(int) 9 => 'Ovary',
(int) 10 => 'Testis',
(int) 11 => 'Bladder',
(int) 12 => 'Breast',
(int) 13 => 'Colon',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Lung',
(int) 17 => 'Muscle',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Testis',
(int) 21 => 'Adrenal',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Kidney',
(int) 26 => 'Ovary',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Muscle',
(int) 39 => 'Ovary',
(int) 40 => 'Placenta',
(int) 41 => 'Testis',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Muscle',
(int) 45 => 'Bladder',
(int) 46 => 'Breast',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Brain',
(int) 50 => 'Colon',
(int) 51 => 'Heart',
(int) 52 => 'Kidney',
(int) 53 => 'Liver',
(int) 54 => 'Testis',
(int) 55 => 'Adipose',
(int) 56 => 'Adrenal',
(int) 57 => 'Bladder',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Heart',
(int) 62 => 'Kidney',
(int) 63 => 'Liver',
(int) 64 => 'Lung',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Placenta',
(int) 68 => 'Testis',
(int) 69 => 'Brain',
(int) 70 => 'Breast',
(int) 71 => 'Colon',
(int) 72 => 'Heart',
(int) 73 => 'Kidney',
(int) 74 => 'Liver',
(int) 75 => 'Lung',
(int) 76 => 'Muscle',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta'
)
),
'CIL_0003AN_0007' => array(
'genes_in_region' => array(
'ENSMUSG00000045551' => array(
[maximum depth reached]
),
'ENSMUSG00000052270' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Adipose',
(int) 27 => 'Adrenal',
(int) 28 => 'Bladder',
(int) 29 => 'Brain',
(int) 30 => 'Breast',
(int) 31 => 'Colon',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta'
)
),
'CIL_0003AN_0008' => array(
'genes_in_region' => array(
'ENSMUSG00000052270' => array(
[maximum depth reached]
),
'ENSMUSG00000090957' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Adipose',
(int) 27 => 'Adrenal',
(int) 28 => 'Bladder',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0003AN_0009',
'tax_id' => '10090',
'chromosome' => '17',
'seq_start' => '20113210',
'seq_end' => '20183097',
'region_length' => '69887',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000071276-ENSMUSG00000071275'
)
)
$gene_el = array(
'ENSMUST00000164167' => array(
'Adipose' => array(
'average_FPKM' => '0.223',
'stddev_FPKM' => '0.09'
),
'Adrenal' => array(
'average_FPKM' => '0.229',
'stddev_FPKM' => '0.05'
),
'Bladder' => array(
'average_FPKM' => '0.086',
'stddev_FPKM' => '0.03'
),
'Breast' => array(
'average_FPKM' => '0.181',
'stddev_FPKM' => '0.03'
),
'Colon' => array(
'average_FPKM' => '0.131',
'stddev_FPKM' => '0.08'
),
'Heart' => array(
'average_FPKM' => '0.154',
'stddev_FPKM' => '0.10'
),
'Kidney' => array(
'average_FPKM' => '0.116',
'stddev_FPKM' => '0.03'
),
'Liver' => array(
'average_FPKM' => '0.080',
'stddev_FPKM' => '0.08'
),
'Lung' => array(
'average_FPKM' => '0.190',
'stddev_FPKM' => '0.11'
),
'Muscle' => array(
'average_FPKM' => '0.033',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.436',
'stddev_FPKM' => '0.25'
),
'Testis' => array(
'average_FPKM' => '0.542',
'stddev_FPKM' => '0.28'
)
)
)
$gene_key = 'ENSMUSG00000090957'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.223',
'stddev_FPKM' => '0.09'
),
'Adrenal' => array(
'average_FPKM' => '0.229',
'stddev_FPKM' => '0.05'
),
'Bladder' => array(
'average_FPKM' => '0.086',
'stddev_FPKM' => '0.03'
),
'Breast' => array(
'average_FPKM' => '0.181',
'stddev_FPKM' => '0.03'
),
'Colon' => array(
'average_FPKM' => '0.131',
'stddev_FPKM' => '0.08'
),
'Heart' => array(
'average_FPKM' => '0.154',
'stddev_FPKM' => '0.10'
),
'Kidney' => array(
'average_FPKM' => '0.116',
'stddev_FPKM' => '0.03'
),
'Liver' => array(
'average_FPKM' => '0.080',
'stddev_FPKM' => '0.08'
),
'Lung' => array(
'average_FPKM' => '0.190',
'stddev_FPKM' => '0.11'
),
'Muscle' => array(
'average_FPKM' => '0.033',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.436',
'stddev_FPKM' => '0.25'
),
'Testis' => array(
'average_FPKM' => '0.542',
'stddev_FPKM' => '0.28'
)
)
$tran_key = 'ENSMUST00000164167'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(CABZ01029333.1)