C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003BK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000185504-ENSG00000182446 CGP 9606 17:81539885-81648465
GeneTranscriptPositionBiotype
ENSG00000182446 (NPLOC4)
nuclear protein localization 4 homolog (S. cerevisiae) 		ENST00000331134 (NPLOC4-001) 81556887-81637146 protein_coding
ENST00000374747 (NPLOC4-002) 81561766-81637060 protein_coding
ENST00000570300 (NPLOC4-013) 81608811-81648465 processed_transcript
ENST00000570324 (NPLOC4-014) 81604572-81613402 nonsense_mediated_decay
ENST00000571562 (NPLOC4-011) 81612679-81613347 processed_transcript
ENST00000571714 (NPLOC4-017) 81559182-81572073 protein_coding
ENST00000572346 (NPLOC4-006) 81559064-81566985 processed_transcript
ENST00000572351 (NPLOC4-015) 81588091-81597319 processed_transcript
ENST00000572760 (NPLOC4-004) 81558789-81566602 protein_coding
ENST00000572824 (NPLOC4-008) 81559268-81569083 protein_coding
ENST00000573212 (NPLOC4-018) 81559316-81569102 nonsense_mediated_decay
ENST00000573328 (NPLOC4-012) 81604609-81608912 retained_intron
ENST00000573519 (NPLOC4-016) 81559091-81569064 protein_coding
ENST00000573876 (NPLOC4-005) 81559125-81566635 protein_coding
ENST00000574095 (NPLOC4-009) 81636397-81637110 processed_transcript
ENST00000574344 (NPLOC4-010) 81604664-81614381 processed_transcript
ENST00000574897 (NPLOC4-003) 81564909-81637079 nonsense_mediated_decay
ENST00000574964 (NPLOC4-019) 81559014-81560889 processed_transcript
ENST00000576713 (NPLOC4-007) 81559396-81572108 retained_intron
ENST00000576940 (NPLOC4-020) 81564213-81567495 processed_transcript
ENSG00000185504 (C17orf70)
chromosome 17 open reading frame 70 		ENST00000327787 (C17orf70-001) 81539885-81552377 protein_coding
ENST00000425898 (C17orf70-004) 81539886-81548498 protein_coding
ENST00000443656 (C17orf70-002) 81539885-81552376 nonsense_mediated_decay
ENST00000536161 (C17orf70-006) 81550797-81553961 protein_coding
ENST00000541246 (C17orf70-008) 81549254-81553109 protein_coding
ENST00000544302 (C17orf70-007) 81550292-81553127 protein_coding
ENST00000545865 (C17orf70-005) 81544004-81547203 nonsense_mediated_decay
ENSG00000207021 (Y_RNA)
Y RNA 		ENST00000384294 (Y_RNA.1-668) 81573490-81573602 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0003BK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025384-ENSMUSG00000039703 CGP 10090 11:120369055-120437708
GeneTranscriptPositionBiotype
ENSMUSG00000025384 (2310003H01Rik)
RIKEN cDNA 2310003H01 gene 		ENSMUST00000026448 (2310003H01Rik-001) 120369562-120378764 protein_coding
ENSMUST00000129203 (2310003H01Rik-008) 120369881-120370888 retained_intron
ENSMUST00000134771 (2310003H01Rik-007) 120372971-120374167 processed_transcript
ENSMUST00000135635 (2310003H01Rik-006) 120369055-120378735 retained_intron
ENSMUST00000148520 (2310003H01Rik-002) 120376170-120378709 processed_transcript
ENSMUST00000152346 (2310003H01Rik-004) 120377323-120378735 processed_transcript
ENSMUST00000153015 (2310003H01Rik-005) 120376986-120378474 processed_transcript
ENSMUST00000154826 (2310003H01Rik-003) 120373026-120378736 retained_intron
ENSMUSG00000039703 (Nploc4)
nuclear protein localization 4 homolog (S. cerevisiae) 		ENSMUST00000044271 (Nploc4-001) 120380370-120437708 protein_coding
ENSMUST00000103017 (Nploc4-002) 120380370-120437708 protein_coding
ENSMUST00000132519 (Nploc4-003) 120404265-120421457 processed_transcript
ENSMUST00000136095 (Nploc4-004) 120413640-120416931 processed_transcript
ENSMUST00000137041 (Nploc4-005) 120382318-120383503 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003BK_0001ENSG00000182446ENST00000331134ENST00000374747ENST00000570300ENST00000570324ENST00000571562ENST00000571714ENST00000572346ENST00000572351ENST00000572760ENST00000572824ENST00000573212ENST00000573328ENST00000573519ENST00000573876ENST00000574095ENST00000574344ENST00000574897ENST00000574964ENST00000576713ENST00000576940ENSG00000185504ENST00000327787ENST00000425898ENST00000443656ENST00000536161ENST00000541246ENST00000544302ENST00000545865ENSG00000207021ENST00000384294CIL_0003BK_0002ENSMUSG00000025384ENSMUST00000026448ENSMUST00000129203ENSMUST00000134771ENSMUST00000135635ENSMUST00000148520ENSMUST00000152346ENSMUST00000153015ENSMUST00000154826ENSMUSG00000039703ENSMUST00000044271ENSMUST00000103017ENSMUST00000132519ENSMUST00000136095ENSMUST00000137041
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003BK_0001ENSG00000182446ENST00000331134ENST00000374747ENST00000573328ENST00000574897ENSG00000185504ENST00000327787ENST00000425898ENST00000443656ENST00000541246ENST00000545865ENSG00000207021ENST00000384294CIL_0003BK_0002ENSMUSG00000025384ENSMUST00000026448ENSMUST00000135635ENSMUSG00000039703ENSMUST00000044271ENSMUST00000103017ENSMUST00000132519ENSMUST00000137041
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000182446 ENST00000331134 15.442±0.00 10.359±0.00 N/A 11.387±5.40 16.890±15.17 5.135±0.69 14.784±12.49 5.919±3.00 5.422±2.65 9.646±7.13 59.185±0.00 12.340±9.62 15.735±4.89 29.107±2.47
ENST00000374747 N/A 3.506±0.00 1.446±0.00 2.098±0.00 N/A 1.248±0.00 N/A 0.691±0.00 0.930±0.00 1.125±0.41 N/A 1.042±0.00 N/A N/A
ENST00000570300 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570324 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572346 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572824 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573328 N/A N/A N/A N/A N/A N/A 7.964±0.00 N/A N/A 11.809±0.00 N/A N/A N/A N/A
ENST00000573519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574344 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574897 N/A N/A N/A N/A 1.219±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000185504 ENST00000327787 2.024±0.00 N/A 0.277±0.00 0.709±0.28 0.660±0.52 2.057±0.00 2.203±0.00 4.698±0.00 1.952±1.80 0.711±0.30 4.567±0.00 5.249±1.97 2.900±0.96 1.840±0.41
ENST00000425898 1.831±0.00 7.199±0.00 N/A 1.266±0.00 1.403±1.03 0.890±0.45 N/A 1.377±0.00 0.441±0.23 2.383±0.00 N/A 3.138±1.50 1.689±0.19 2.176±0.12
ENST00000443656 2.174±0.00 3.232±0.00 0.332±0.00 0.713±0.00 1.177±1.01 0.640±0.00 1.212±0.00 0.970±0.00 N/A N/A N/A 2.209±0.95 0.709±0.00 N/A
ENST00000536161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.435±0.00 N/A N/A N/A
ENST00000544302 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545865 N/A N/A N/A N/A N/A N/A N/A 0.584±0.00 N/A N/A 0.413±0.00 N/A N/A N/A
ENSG00000207021 ENST00000384294 0.324±0.00 0.336±0.00 N/A N/A 41.387±41.06 N/A N/A N/A N/A 1.294±0.00 N/A 0.628±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025384 ENSMUST00000026448 11.175±3.80 40.280±2.21 7.618±0.34 25.583±15.84 12.725±5.45 16.577±2.39 7.073±0.37 9.460±1.25 3.717±0.64 15.675±1.19 4.117±0.82 21.819±10.46 3.992±0.62 16.748±6.67
ENSMUST00000129203 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135635 2.524±0.00 N/A 1.227±0.09 3.192±1.81 2.458±0.01 N/A 0.918±0.05 1.322±0.26 0.617±0.15 N/A 0.964±0.36 2.764±1.34 1.029±0.52 3.580±1.40
ENSMUST00000148520 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152346 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039703 ENSMUST00000044271 24.758±1.93 26.068±4.93 14.046±3.64 24.669±1.73 24.473±3.35 20.244±3.22 14.843±1.10 17.389±2.90 19.498±6.26 19.719±0.66 19.659±2.12 28.693±7.09 15.794±5.70 26.515±13.04
ENSMUST00000103017 N/A 4.794±0.72 N/A 5.580±0.00 4.097±0.00 N/A N/A N/A N/A N/A N/A 8.408±1.29 N/A 5.237±0.35
ENSMUST00000132519 N/A N/A N/A 8.177±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 12.796±5.44 N/A
ENSMUST00000136095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137041 N/A N/A N/A N/A N/A 23.138±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

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